Wall clock time and date at job start Tue Mar 31 2020 03:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00469 * 2 1 4 4 O 1.20824 * 119.99804 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00337 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.44721 * 299.96381 * 5 3 2 7 7 C 1.53040 * 109.46169 * 59.92963 * 5 3 2 8 8 C 1.53194 * 109.31451 * 181.38700 * 7 5 3 9 9 N 1.46922 * 108.77358 * 305.36465 * 8 7 5 10 10 C 1.34781 * 120.63187 * 233.62942 * 9 8 7 11 11 O 1.21684 * 120.00069 * 174.76544 * 10 9 8 12 12 C 1.46382 * 119.99410 * 354.76266 * 10 9 8 13 13 H 1.07994 * 120.00350 * 5.00891 * 12 10 9 14 14 C 1.40050 * 119.99429 * 185.00834 * 12 10 9 15 15 N 1.30677 * 120.00187 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99873 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46840 * 89.99905 * 16 14 12 18 18 H 1.48493 * 109.47146 * 209.99944 * 16 14 12 19 19 H 1.48500 * 109.47059 * 330.00089 * 16 14 12 20 20 C 1.46995 * 118.75871 * 53.60655 * 9 8 7 21 21 H 1.08997 * 109.62937 * 186.61793 * 20 9 8 22 22 C 1.50708 * 109.57774 * 66.16884 * 20 9 8 23 23 O 1.20825 * 119.99974 * 340.76062 * 22 20 9 24 24 O 1.34224 * 119.99833 * 160.76279 * 22 20 9 25 25 C 1.45193 * 117.00303 * 180.02562 * 24 22 20 26 26 C 1.53039 * 109.46255 * 179.97438 * 5 3 2 27 27 H 1.09002 * 109.46795 * 60.00166 * 1 2 3 28 28 H 1.08999 * 109.47582 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46881 * 300.00562 * 1 2 3 30 30 H 1.09000 * 109.49724 * 301.33819 * 7 5 3 31 31 H 1.09000 * 109.50144 * 61.40285 * 7 5 3 32 32 H 1.08999 * 109.58452 * 65.14981 * 8 7 5 33 33 H 1.09001 * 109.58686 * 185.43419 * 8 7 5 34 34 H 0.97000 * 119.99611 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47432 * 179.97438 * 25 24 22 36 36 H 1.09012 * 109.47040 * 299.99916 * 25 24 22 37 37 H 1.09004 * 109.47481 * 59.99401 * 25 24 22 38 38 H 1.09006 * 109.49811 * 298.56609 * 26 5 3 39 39 H 1.09004 * 109.49709 * 58.62735 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9559 0.7810 0.8896 7 6 4.1129 0.5797 -1.2497 8 6 5.6438 0.6315 -1.2295 9 7 6.0677 2.0306 -1.0833 10 6 6.9334 2.5808 -1.9576 11 8 7.2034 3.7650 -1.8831 12 6 7.5488 1.7537 -2.9969 13 1 7.2491 0.7229 -3.1146 14 6 8.5262 2.2994 -3.8385 15 7 8.8892 3.5465 -3.6957 16 14 9.3121 1.2438 -5.1643 17 1 8.5243 1.3562 -6.4181 18 1 10.7009 1.7090 -5.4089 19 1 9.3357 -0.1729 -4.7198 20 6 5.5296 2.8195 0.0342 21 1 5.8456 3.8579 -0.0651 22 6 6.0343 2.2573 1.3383 23 8 6.4643 1.1291 1.3837 24 8 6.0059 3.0100 2.4493 25 6 6.5085 2.4039 3.6692 26 6 4.0001 2.7424 -0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.7841 -0.4595 -1.2610 31 1 3.7430 1.0879 -2.1402 32 1 6.0181 0.0466 -0.3893 33 1 6.0355 0.2242 -2.1616 34 1 9.5665 3.9243 -4.2784 35 1 6.4291 3.1178 4.4891 36 1 5.9212 1.5156 3.9022 37 1 7.5528 2.1233 3.5321 38 1 3.6317 3.2304 -0.9035 39 1 3.5905 3.2431 0.8762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331091049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:53 Heat of formation + Delta-G solvation = -224.329084 kcal Electronic energy + Delta-G solvation = -25636.290101 eV Core-core repulsion = 21736.661303 eV Total energy + Delta-G solvation = -3899.628797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23923 -41.41117 -39.92576 -38.02555 -37.55328 -37.06590 -34.72457 -33.78960 -32.83149 -29.13913 -28.76611 -28.47813 -26.69244 -24.97401 -23.35853 -22.66826 -21.73551 -20.53652 -18.98804 -18.71201 -18.33088 -17.93970 -17.59485 -17.51466 -17.17051 -17.11928 -16.16609 -15.85620 -15.36817 -15.22180 -14.73057 -14.72961 -14.40871 -14.25428 -14.04504 -13.88902 -13.46854 -13.22528 -13.04923 -12.94964 -12.82163 -12.71220 -12.60250 -12.51978 -12.06577 -11.98571 -11.81183 -11.79939 -11.65551 -11.48611 -11.27798 -10.92461 -9.85503 -9.27077 -8.31072 -6.85688 1.04552 1.08313 1.41774 1.42519 1.56671 1.62286 1.65657 2.24156 2.44932 2.67605 3.38444 3.51981 3.62255 3.70537 3.85974 3.91399 4.10516 4.29354 4.31373 4.32471 4.35016 4.40788 4.47457 4.58604 4.66537 4.70684 4.74341 4.76853 4.90930 4.94675 5.17026 5.29858 5.37850 5.43378 5.66113 6.04530 6.22087 6.64514 6.70535 6.86796 7.29870 8.38818 8.63953 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.005306 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.870037 B = 5276.145481 C = 6517.676351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.478 3.522 4 O -0.531 6.531 5 C -0.076 4.076 6 H 0.114 0.886 7 C -0.114 4.114 8 C 0.114 3.886 9 N -0.623 5.623 10 C 0.543 3.457 11 O -0.624 6.624 12 C -0.562 4.562 13 H 0.098 0.902 14 C 0.030 3.970 15 N -0.819 5.819 16 Si 0.995 3.005 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.247 1.247 20 C 0.155 3.845 21 H 0.106 0.894 22 C 0.457 3.543 23 O -0.514 6.514 24 O -0.366 6.366 25 C 0.027 3.973 26 C -0.092 4.092 27 H 0.061 0.939 28 H 0.134 0.866 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.275 0.725 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.415 -9.613 9.381 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.322 3.678 4 O -0.420 6.420 5 C -0.095 4.095 6 H 0.132 0.868 7 C -0.153 4.153 8 C -0.008 4.008 9 N -0.360 5.360 10 C 0.351 3.649 11 O -0.511 6.511 12 C -0.598 4.598 13 H 0.116 0.884 14 C -0.185 4.185 15 N -0.449 5.449 16 Si 0.814 3.186 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.170 1.170 20 C 0.047 3.953 21 H 0.124 0.876 22 C 0.299 3.701 23 O -0.402 6.402 24 O -0.282 6.282 25 C -0.066 4.066 26 C -0.130 4.130 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.257 -8.895 9.428 17.839 hybrid contribution 0.506 0.091 -0.290 0.590 sum -11.751 -8.804 9.138 17.295 Atomic orbital electron populations 1.23595 0.74596 1.05868 1.02587 1.86504 1.25109 1.32200 1.83482 1.23620 0.91586 0.81442 0.71167 1.90652 1.67598 1.37253 1.46528 1.21038 0.87260 0.98171 1.03072 0.86793 1.21911 0.95605 1.02486 0.95251 1.21793 0.93357 0.82108 1.03568 1.48012 1.48701 1.12981 1.26316 1.18726 0.77481 0.87040 0.81665 1.90558 1.65784 1.18554 1.76231 1.21493 1.22901 0.99134 1.16240 0.88428 1.26978 0.95810 0.96064 0.99675 1.70177 1.24795 1.15252 1.34635 0.85048 0.77274 0.79024 0.77210 1.18483 1.20061 1.17026 1.20353 0.94606 0.98166 0.82144 0.87606 1.24610 0.74831 0.84298 0.86364 1.90557 1.43350 1.20397 1.85909 1.86532 1.76274 1.46553 1.18792 1.23578 0.99253 1.00775 0.83010 1.21648 0.90708 0.95443 1.05245 0.92039 0.84784 0.91780 0.86897 0.91538 0.90880 0.88743 0.91524 0.84815 0.91002 0.92789 0.90014 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.96 10.44 -51.42 -0.54 -8.50 16 3 C 0.48 12.90 7.26 71.23 0.52 13.42 16 4 O -0.53 -16.81 15.73 21.97 0.35 -16.47 16 5 C -0.08 -2.14 2.43 -11.52 -0.03 -2.17 16 6 H 0.11 3.05 7.10 -2.39 -0.02 3.04 16 7 C -0.11 -3.25 5.30 30.67 0.16 -3.09 16 8 C 0.11 4.15 5.81 86.36 0.50 4.65 16 9 N -0.62 -28.26 2.54 -804.05 -2.05 -30.30 16 10 C 0.54 31.09 7.62 86.36 0.66 31.75 16 11 O -0.62 -41.09 14.46 -4.30 -0.06 -41.15 16 12 C -0.56 -31.01 8.86 24.83 0.22 -30.79 16 13 H 0.10 4.77 5.69 -2.91 -0.02 4.76 16 14 C 0.03 1.65 5.50 85.30 0.47 2.12 16 15 N -0.82 -49.41 11.84 21.84 0.26 -49.16 16 16 Si 1.00 40.12 29.56 68.60 2.03 42.15 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 18 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 20 C 0.15 6.17 3.13 44.22 0.14 6.31 16 21 H 0.11 4.79 7.00 -2.39 -0.02 4.77 16 22 C 0.46 16.90 6.27 71.24 0.45 17.35 16 23 O -0.51 -20.13 13.71 21.97 0.30 -19.83 16 24 O -0.37 -11.58 10.56 -51.36 -0.54 -12.12 16 25 C 0.03 0.60 10.56 113.37 1.20 1.80 16 26 C -0.09 -2.97 4.11 30.67 0.13 -2.85 16 27 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 30 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.64 6.16 -2.39 -0.01 2.63 16 33 H 0.09 3.52 5.38 -2.39 -0.01 3.50 16 34 H 0.27 15.04 8.29 -92.71 -0.77 14.28 16 35 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.05 1.31 8.13 -2.38 -0.02 1.29 16 38 H 0.08 2.84 8.13 -2.38 -0.02 2.83 16 39 H 0.10 2.87 8.07 -2.39 -0.02 2.85 16 Total: -1.00 -78.73 328.43 6.43 -72.30 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 1.08 Total: 22.96 kcal Atomic # 6 Polarization: 34.52 SS G_CDS: 5.60 Total: 40.12 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.79 Total: -79.46 kcal Atomic # 8 Polarization: -97.56 SS G_CDS: -0.49 Total: -98.06 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -78.73 6.43 -72.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331091049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.034 kcal (2) G-P(sol) polarization free energy of solvation -78.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds