Wall clock time and date at job start Tue Mar 31 2020 03:59:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86798 * 120.00218 * 2 1
4 4 H 1.48497 * 109.47425 * 270.00559 * 3 2 1
5 5 H 1.48499 * 109.46776 * 30.00160 * 3 2 1
6 6 H 1.48499 * 109.46992 * 150.00013 * 3 2 1
7 7 C 1.37882 * 119.99878 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99722 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00022 * 359.97438 * 7 2 1
10 10 O 1.42906 * 113.41285 * 46.80341 * 9 7 2
11 11 C 1.53495 * 114.20606 * 180.02562 * 9 7 2
12 12 N 1.47068 * 87.98801 * 139.65813 * 11 9 7
13 13 C 1.34775 * 136.06017 * 152.84456 * 12 11 9
14 14 O 1.21278 * 119.99813 * 359.97438 * 13 12 11
15 15 C 1.50699 * 119.99806 * 179.97438 * 13 12 11
16 16 C 1.53000 * 109.46844 * 179.97438 * 15 13 12
17 17 O 1.42903 * 109.46918 * 180.02562 * 16 15 13
18 18 C 1.42900 * 114.00146 * 180.02562 * 17 16 15
19 19 C 1.52997 * 109.47517 * 180.02562 * 18 17 16
20 20 H 1.08999 * 110.33077 * 52.74689 * 19 18 17
21 21 C 1.54477 * 110.37308 * 175.00102 * 19 18 17
22 22 C 1.54507 * 104.06510 * 142.80822 * 21 19 18
23 23 C 1.54483 * 104.06211 * 359.97438 * 22 21 19
24 24 O 1.44428 * 104.89902 * 335.96812 * 23 22 21
25 25 C 1.47069 * 87.88220 * 333.09977 * 12 11 9
26 26 H 0.96994 * 119.99772 * 359.97438 * 1 2 3
27 27 H 0.96701 * 113.99722 * 313.20044 * 10 9 7
28 28 H 1.08996 * 113.46926 * 24.87198 * 11 9 7
29 29 H 1.09002 * 113.46566 * 254.43645 * 11 9 7
30 30 H 1.09001 * 109.47144 * 60.00071 * 15 13 12
31 31 H 1.08994 * 109.47715 * 300.00053 * 15 13 12
32 32 H 1.08992 * 109.47033 * 60.00363 * 16 15 13
33 33 H 1.08997 * 109.47360 * 299.99827 * 16 15 13
34 34 H 1.08999 * 109.47037 * 59.99798 * 18 17 16
35 35 H 1.09008 * 109.47052 * 300.00240 * 18 17 16
36 36 H 1.09000 * 110.51486 * 24.16264 * 21 19 18
37 37 H 1.09006 * 110.51115 * 261.45247 * 21 19 18
38 38 H 1.09005 * 110.51421 * 241.35469 * 22 21 19
39 39 H 1.09004 * 110.63217 * 118.69765 * 22 21 19
40 40 H 1.09002 * 110.37322 * 94.85326 * 23 22 21
41 41 H 1.08999 * 110.37312 * 217.08002 * 23 22 21
42 42 H 1.08998 * 113.46912 * 141.68133 * 25 12 11
43 43 H 1.08996 * 113.47054 * 272.12106 * 25 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4400 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 8 0.1894 -2.5419 -0.9562
11 6 2.1488 -3.7442 -0.0005
12 7 1.2099 -4.3575 0.9509
13 6 0.8345 -5.6114 1.2723
14 8 1.3281 -6.5583 0.6973
15 6 -0.1984 -5.8367 2.3462
16 6 -0.4415 -7.3381 2.5130
17 8 -1.4214 -7.5518 3.5309
18 6 -1.7231 -8.9284 3.7675
19 6 -2.7784 -9.0371 4.8699
20 1 -3.6408 -8.4147 4.6313
21 6 -3.2118 -10.5081 5.0562
22 6 -3.4165 -10.6489 6.5812
23 6 -3.0818 -9.2465 7.1360
24 8 -2.2140 -8.6529 6.1458
25 6 0.8561 -3.0001 1.3928
26 1 -0.4849 0.8400 0.0004
27 1 -0.3742 -1.7561 -0.9532
28 1 3.1384 -3.5658 0.4200
29 1 2.1850 -4.2532 -0.9637
30 1 -1.1302 -5.3475 2.0625
31 1 0.1590 -5.4195 3.2876
32 1 0.4901 -7.8277 2.7965
33 1 -0.7992 -7.7550 1.5716
34 1 -0.8180 -9.4506 4.0777
35 1 -2.1068 -9.3788 2.8520
36 1 -2.4287 -11.1836 4.7120
37 1 -4.1445 -10.7015 4.5263
38 1 -2.7345 -11.3941 6.9909
39 1 -4.4496 -10.9129 6.8073
40 1 -3.9910 -8.6555 7.2469
41 1 -2.5653 -9.3300 8.0922
42 1 -0.2045 -2.8776 1.6120
43 1 1.4979 -2.6215 2.1882
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000331363388.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:59:59
Heat of formation + Delta-G solvation = -165.540655 kcal
Electronic energy + Delta-G solvation = -23974.044021 eV
Core-core repulsion = 20212.797576 eV
Total energy + Delta-G solvation = -3761.246445 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 299.161 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.35894 -40.47257 -39.43961 -38.48161 -35.89839 -34.12420 -33.40011 -32.96459
-31.33861 -30.16230 -27.37472 -26.85779 -26.23943 -24.30112 -22.93880 -22.00736
-21.70668 -19.93724 -19.29550 -18.32887 -17.78419 -17.47160 -17.19973 -16.97810
-16.73914 -16.59927 -16.26925 -15.97733 -15.84035 -15.01193 -14.95950 -14.60940
-14.51370 -14.17229 -13.84759 -13.60416 -13.40836 -13.17108 -12.79141 -12.77581
-12.68783 -12.53452 -12.28306 -12.21963 -12.20610 -12.14335 -12.10024 -11.49600
-11.42247 -10.98254 -10.75966 -10.69645 -10.64930 -10.25168 -9.62118 -8.27464
-6.44397 1.47883 1.50845 1.55067 1.60450 1.78048 2.40596 2.60792
2.92856 2.95052 3.51482 3.64658 3.74608 3.79619 3.94801 3.97549
4.02265 4.14879 4.16069 4.29314 4.36373 4.41600 4.47475 4.49668
4.53607 4.61204 4.70515 4.74328 4.80732 4.81714 4.88815 4.91960
4.93732 4.94931 5.08440 5.16023 5.24023 5.73262 5.87859 5.90588
6.11696 6.61715 6.82686 7.06090 7.29502 7.48694 8.78907
Molecular weight = 299.16amu
Principal moments of inertia in cm(-1)
A = 0.028032 B = 0.002391 C = 0.002285
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 998.627994 B =11706.657433 C =12248.584291
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C 0.031 3.969
3 Si 0.972 3.028
4 H -0.279 1.279
5 H -0.281 1.281
6 H -0.265 1.265
7 C -0.551 4.551
8 H 0.076 0.924
9 C 0.217 3.783
10 O -0.587 6.587
11 C 0.107 3.893
12 N -0.637 5.637
13 C 0.536 3.464
14 O -0.596 6.596
15 C -0.122 4.122
16 C 0.090 3.910
17 O -0.400 6.400
18 C 0.062 3.938
19 C 0.071 3.929
20 H 0.075 0.925
21 C -0.144 4.144
22 C -0.149 4.149
23 C 0.031 3.969
24 O -0.399 6.399
25 C 0.085 3.915
26 H 0.277 0.723
27 H 0.390 0.610
28 H 0.105 0.895
29 H 0.054 0.946
30 H 0.104 0.896
31 H 0.111 0.889
32 H 0.054 0.946
33 H 0.055 0.945
34 H 0.058 0.942
35 H 0.083 0.917
36 H 0.083 0.917
37 H 0.099 0.901
38 H 0.082 0.918
39 H 0.097 0.903
40 H 0.065 0.935
41 H 0.099 0.901
42 H 0.064 0.936
43 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.517 -15.831 12.402 21.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.170 4.170
3 Si 0.797 3.203
4 H -0.205 1.205
5 H -0.206 1.206
6 H -0.189 1.189
7 C -0.589 4.589
8 H 0.094 0.906
9 C 0.176 3.824
10 O -0.400 6.400
11 C -0.015 4.015
12 N -0.370 5.370
13 C 0.327 3.673
14 O -0.479 6.479
15 C -0.161 4.161
16 C 0.013 3.987
17 O -0.320 6.320
18 C -0.015 4.015
19 C 0.013 3.987
20 H 0.093 0.907
21 C -0.182 4.182
22 C -0.187 4.187
23 C -0.045 4.045
24 O -0.318 6.318
25 C -0.038 4.038
26 H 0.087 0.913
27 H 0.246 0.754
28 H 0.123 0.877
29 H 0.072 0.928
30 H 0.123 0.877
31 H 0.129 0.871
32 H 0.072 0.928
33 H 0.074 0.926
34 H 0.076 0.924
35 H 0.101 0.899
36 H 0.102 0.898
37 H 0.117 0.883
38 H 0.100 0.900
39 H 0.115 0.885
40 H 0.083 0.917
41 H 0.117 0.883
42 H 0.083 0.917
43 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -7.134 -16.711 12.176 21.873
hybrid contribution 0.079 1.218 -0.192 1.236
sum -7.056 -15.493 11.984 20.819
Atomic orbital electron populations
1.69323 1.07197 1.28997 1.50344 1.25792 0.95784 1.02764 0.92618
0.85338 0.78711 0.78128 0.78159 1.20457 1.20644 1.18913 1.21651
0.94229 0.90419 1.52591 0.90610 1.19788 0.85524 0.91791 0.85306
1.86029 1.45502 1.48186 1.60292 1.23348 0.94648 0.91342 0.92196
1.49753 1.42118 1.05158 1.39956 1.20410 0.82983 0.80273 0.83587
1.90615 1.59458 1.41330 1.56474 1.21294 0.98681 0.97986 0.98185
1.21953 0.91620 0.94359 0.90761 1.87831 1.60281 1.26352 1.57518
1.22783 0.98378 0.82519 0.97787 1.23192 0.95079 0.96492 0.83888
0.90707 1.22930 1.03513 0.94183 0.97542 1.22943 1.03921 0.97345
0.94493 1.23633 0.94604 0.93295 0.92958 1.89271 1.51195 1.75330
1.16054 1.24009 1.00740 0.77450 1.01596 0.91326 0.75439 0.87710
0.92754 0.87741 0.87095 0.92772 0.92630 0.92392 0.89925 0.89813
0.88252 0.89958 0.88487 0.91692 0.88325 0.91739 0.88558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -46.01 11.01 21.45 0.24 -45.78 16
2 C 0.03 1.50 5.40 84.66 0.46 1.96 16
3 Si 0.97 38.92 29.54 68.60 2.03 40.94 16
4 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16
5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16
6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16
7 C -0.55 -27.13 8.69 25.60 0.22 -26.90 16
8 H 0.08 3.59 7.81 -2.91 -0.02 3.57 16
9 C 0.22 10.40 1.57 -11.29 -0.02 10.38 16
10 O -0.59 -30.74 13.53 -148.98 -2.02 -32.76 16
11 C 0.11 4.69 8.04 83.18 0.67 5.36 16
12 N -0.64 -26.92 3.69 -859.30 -3.17 -30.09 16
13 C 0.54 21.68 8.08 87.66 0.71 22.39 16
14 O -0.60 -27.20 16.76 -3.02 -0.05 -27.26 16
15 C -0.12 -3.92 5.90 29.85 0.18 -3.74 16
16 C 0.09 2.67 5.23 71.98 0.38 3.04 16
17 O -0.40 -11.44 10.34 -148.95 -1.54 -12.98 16
18 C 0.06 1.33 5.54 71.98 0.40 1.73 16
19 C 0.07 1.37 3.58 31.10 0.11 1.48 16
20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
21 C -0.14 -1.72 6.63 31.61 0.21 -1.51 16
22 C -0.15 -1.54 7.09 31.61 0.22 -1.32 16
23 C 0.03 0.47 7.62 72.49 0.55 1.03 16
24 O -0.40 -9.51 11.37 -148.95 -1.69 -11.21 16
25 C 0.08 3.59 7.82 83.09 0.65 4.24 16
26 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16
27 H 0.39 20.64 6.33 -74.06 -0.47 20.17 16
28 H 0.11 4.12 8.10 -2.39 -0.02 4.10 16
29 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16
30 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16
31 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16
32 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16
33 H 0.06 1.64 8.10 -2.39 -0.02 1.63 16
34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16
36 H 0.08 0.92 7.87 -2.39 -0.02 0.90 16
37 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16
38 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16
39 H 0.10 0.63 8.14 -2.38 -0.02 0.62 16
40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
42 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16
43 H 0.10 3.79 8.10 -2.39 -0.02 3.77 16
Total: -1.00 -62.40 359.16 -0.94 -63.35
By element:
Atomic # 1 Polarization: 37.11 SS G_CDS: 0.53 Total: 37.64 kcal
Atomic # 6 Polarization: 13.40 SS G_CDS: 4.74 Total: 18.13 kcal
Atomic # 7 Polarization: -72.93 SS G_CDS: -2.94 Total: -75.87 kcal
Atomic # 8 Polarization: -78.90 SS G_CDS: -5.30 Total: -84.20 kcal
Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal
Total: -62.40 -0.94 -63.35 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000331363388.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -102.191 kcal
(2) G-P(sol) polarization free energy of solvation -62.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds