Wall clock time and date at job start Tue Mar 31 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47130 * 2 1 4 4 C 1.50703 * 109.46898 * 240.00539 * 2 1 3 5 5 H 1.08003 * 119.99651 * 239.99521 * 4 2 1 6 6 C 1.37875 * 120.00469 * 59.99636 * 4 2 1 7 7 N 1.31515 * 119.99601 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00323 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47034 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47042 * 120.00102 * 8 6 4 11 11 H 1.48497 * 109.47175 * 240.00444 * 8 6 4 12 12 N 1.46498 * 109.47559 * 120.00332 * 2 1 3 13 13 C 1.46498 * 119.99874 * 59.99902 * 12 2 1 14 14 S 1.65595 * 119.99850 * 240.00191 * 12 2 1 15 15 O 1.42105 * 106.40149 * 203.53728 * 14 12 2 16 16 O 1.42098 * 106.40317 * 336.45602 * 14 12 2 17 17 C 1.76204 * 107.21987 * 89.99964 * 14 12 2 18 18 C 1.34556 * 126.58179 * 29.67996 * 17 14 12 19 19 N 1.34013 * 108.03094 * 179.87454 * 18 17 14 20 20 C 1.30910 * 109.29991 * 0.49153 * 19 18 17 21 21 N 1.34811 * 108.60940 * 359.61269 * 20 19 18 22 22 C 1.47012 * 111.18216 * 180.22153 * 21 20 19 23 23 C 1.54381 * 105.52857 * 342.90184 * 22 21 20 24 24 C 1.51560 * 141.44404 * 179.53666 * 20 19 18 25 25 H 1.08999 * 109.47669 * 59.99622 * 1 2 3 26 26 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46923 * 299.99821 * 1 2 3 28 28 H 0.97001 * 119.99674 * 180.02562 * 7 6 4 29 29 H 1.09009 * 109.46956 * 270.00331 * 13 12 2 30 30 H 1.08994 * 109.47112 * 30.00030 * 13 12 2 31 31 H 1.09001 * 109.47155 * 150.00738 * 13 12 2 32 32 H 1.07999 * 125.98614 * 0.04280 * 18 17 14 33 33 H 1.09004 * 110.23392 * 101.90226 * 22 21 20 34 34 H 1.08999 * 110.23865 * 223.87662 * 22 21 20 35 35 H 1.09005 * 110.96432 * 267.59131 * 23 22 21 36 36 H 1.08996 * 110.97235 * 143.83039 * 23 22 21 37 37 H 1.08995 * 110.48097 * 315.31468 * 24 20 19 38 38 H 1.09004 * 110.47487 * 77.80590 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1855 -4.8161 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4278 14 16 2.9704 0.1141 2.2861 15 8 3.7120 -0.8790 2.9813 16 8 3.5794 1.1829 1.5747 17 6 1.8961 0.8534 3.4711 18 6 0.6932 0.3929 3.8602 19 7 0.2015 1.2389 4.7759 20 6 1.0522 2.2162 4.9629 21 7 2.1229 2.0123 4.1696 22 6 3.1205 3.0788 4.3391 23 6 2.3717 4.2392 5.0292 24 6 1.2368 3.4899 5.7633 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1615 -3.4844 29 1 0.7376 -2.1444 1.9992 30 1 1.5296 -2.5968 0.4707 31 1 2.4630 -2.5819 1.9862 32 1 0.2098 -0.5032 3.4999 33 1 3.9400 2.7319 4.9686 34 1 3.4991 3.3987 3.3684 35 1 1.9676 4.9348 4.2936 36 1 3.0199 4.7555 5.7372 37 1 0.3215 4.0816 5.7550 38 1 1.5305 3.2577 6.7871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331416086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:29 Heat of formation + Delta-G solvation = 3.157824 kcal Electronic energy + Delta-G solvation = -23278.090915 eV Core-core repulsion = 19863.372312 eV Total energy + Delta-G solvation = -3414.718603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.45848 -36.77820 -36.56151 -36.20267 -35.34963 -32.63642 -31.99738 -29.16272 -28.87919 -27.46693 -25.57336 -25.19598 -22.43221 -21.90005 -20.89501 -20.11102 -18.39309 -17.46436 -16.97194 -16.61537 -16.27100 -15.40030 -15.08791 -14.59138 -14.28007 -14.11656 -13.95900 -13.55181 -13.51195 -13.21431 -12.70969 -12.49901 -12.07205 -11.95916 -11.86100 -11.61332 -11.44797 -11.37839 -11.25239 -11.23304 -10.94316 -10.84924 -10.45833 -10.24117 -10.08659 -9.98158 -9.70122 -9.30020 -8.68704 -8.48429 -8.06346 -6.09891 -4.16933 0.84160 1.61524 2.55098 2.97955 3.26810 3.34954 3.38622 3.53943 3.64778 4.07477 4.20038 4.37900 4.39503 4.49641 4.99907 5.09446 5.19178 5.22248 5.22932 5.30631 5.39163 5.49881 5.60385 5.66359 6.02908 6.06721 6.29956 6.63300 6.68082 6.79622 6.81357 6.89278 7.01342 7.37787 7.59165 7.75864 7.90084 8.01968 8.23211 8.85303 9.48824 10.95959 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.004941 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.744896 B = 5665.165836 C = 5802.076682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.520 4.520 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.970 5.970 13 C 0.090 3.910 14 S 2.705 3.295 15 O -0.967 6.967 16 O -0.952 6.952 17 C -0.566 4.566 18 C 0.094 3.906 19 N -0.487 5.487 20 C 0.215 3.785 21 N -0.427 5.427 22 C 0.083 3.917 23 C -0.127 4.127 24 C -0.043 4.043 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.011 0.989 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.186 0.814 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 4.683 14.414 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.560 4.560 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.812 5.812 13 C -0.056 4.056 14 S 2.789 3.211 15 O -0.957 6.957 16 O -0.942 6.942 17 C -0.759 4.759 18 C -0.060 4.060 19 N -0.206 5.206 20 C -0.050 4.050 21 N -0.108 5.108 22 C -0.038 4.038 23 C -0.165 4.165 24 C -0.082 4.082 25 H 0.112 0.888 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.202 0.798 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.224 4.837 14.599 15.429 hybrid contribution 0.199 -0.296 -1.044 1.103 sum 1.423 4.541 13.556 14.367 Atomic orbital electron populations 1.22136 0.97963 1.00007 1.00809 1.18847 0.91544 0.93146 0.80009 0.92229 1.21345 1.31746 1.13090 0.89779 0.91611 1.24911 0.94913 0.94999 0.99028 1.69880 1.36452 1.22680 1.23756 0.86418 0.78613 0.79654 0.82597 1.19633 1.20953 1.20911 1.57320 1.70508 1.19531 1.33868 1.21465 0.99187 0.81669 1.03275 1.01806 0.73431 0.73492 0.72366 1.93536 1.67791 1.59060 1.75265 1.93560 1.73276 1.56242 1.71111 1.33938 1.18380 1.00795 1.22738 1.22285 0.90662 0.99101 0.93980 1.69916 1.28861 1.03392 1.18435 1.24792 0.86082 0.98293 0.95831 1.45927 1.17901 1.17002 1.30002 1.22747 0.90999 0.85752 1.04283 1.22772 0.96939 0.96478 1.00359 1.20748 1.00584 0.88986 0.97929 0.88812 0.94510 0.96946 0.92694 0.94021 0.89060 0.91435 0.79753 0.88588 0.87325 0.88854 0.87597 0.87948 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 3 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -13.71 7.99 -34.44 -0.28 -13.99 16 5 H 0.07 1.71 7.33 -52.48 -0.38 1.32 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.97 -20.09 3.01 -115.85 -0.35 -20.44 16 13 C 0.09 1.55 9.65 59.85 0.58 2.13 16 14 S 2.71 54.98 5.83 -107.50 -0.63 54.36 16 15 O -0.97 -20.42 16.62 -57.17 -0.95 -21.37 16 16 O -0.95 -21.89 16.58 -57.17 -0.95 -22.84 16 17 C -0.57 -10.42 7.22 -16.45 -0.12 -10.54 16 18 C 0.09 1.66 11.75 -17.90 -0.21 1.45 16 19 N -0.49 -8.56 11.26 -10.56 -0.12 -8.68 16 20 C 0.21 3.24 8.58 -154.86 -1.33 1.91 16 21 N -0.43 -6.87 3.61 -111.32 -0.40 -7.27 16 22 C 0.08 0.95 7.78 -3.04 -0.02 0.92 16 23 C -0.13 -0.92 7.17 -25.20 -0.18 -1.10 16 24 C -0.04 -0.38 6.86 -26.65 -0.18 -0.57 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.04 0.78 7.67 -51.93 -0.40 0.38 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.04 0.60 7.71 -51.92 -0.40 0.20 16 30 H 0.09 1.62 7.02 -51.93 -0.36 1.25 16 31 H 0.07 1.09 7.02 -51.93 -0.36 0.72 16 32 H 0.19 2.81 7.63 -52.49 -0.40 2.41 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -34.71 325.64 -9.65 -44.36 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.08 Total: 0.09 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.68 Total: -14.93 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.24 Total: -60.34 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.90 Total: -44.21 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.63 Total: 54.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.71 -9.65 -44.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331416086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.517 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds