Wall clock time and date at job start Tue Mar 31 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47130 * 2 1 4 4 C 1.50703 * 109.46898 * 240.00539 * 2 1 3 5 5 H 1.08003 * 119.99651 * 239.99521 * 4 2 1 6 6 C 1.37875 * 120.00469 * 59.99636 * 4 2 1 7 7 N 1.31515 * 119.99601 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00323 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47034 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47042 * 120.00102 * 8 6 4 11 11 H 1.48497 * 109.47175 * 240.00444 * 8 6 4 12 12 N 1.46498 * 109.47559 * 120.00332 * 2 1 3 13 13 C 1.46498 * 119.99874 * 59.99902 * 12 2 1 14 14 S 1.65595 * 119.99850 * 240.00191 * 12 2 1 15 15 O 1.42105 * 106.40149 * 203.53728 * 14 12 2 16 16 O 1.42098 * 106.40317 * 336.45602 * 14 12 2 17 17 C 1.76204 * 107.21987 * 89.99964 * 14 12 2 18 18 C 1.34556 * 126.58179 * 29.67996 * 17 14 12 19 19 N 1.34013 * 108.03094 * 179.87454 * 18 17 14 20 20 C 1.30910 * 109.29991 * 0.49153 * 19 18 17 21 21 N 1.34811 * 108.60940 * 359.61269 * 20 19 18 22 22 C 1.47012 * 111.18216 * 180.22153 * 21 20 19 23 23 C 1.54381 * 105.52857 * 342.90184 * 22 21 20 24 24 C 1.51560 * 141.44404 * 179.53666 * 20 19 18 25 25 H 1.08999 * 109.47669 * 59.99622 * 1 2 3 26 26 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46923 * 299.99821 * 1 2 3 28 28 H 0.97001 * 119.99674 * 180.02562 * 7 6 4 29 29 H 1.09009 * 109.46956 * 270.00331 * 13 12 2 30 30 H 1.08994 * 109.47112 * 30.00030 * 13 12 2 31 31 H 1.09001 * 109.47155 * 150.00738 * 13 12 2 32 32 H 1.07999 * 125.98614 * 0.04280 * 18 17 14 33 33 H 1.09004 * 110.23392 * 101.90226 * 22 21 20 34 34 H 1.08999 * 110.23865 * 223.87662 * 22 21 20 35 35 H 1.09005 * 110.96432 * 267.59131 * 23 22 21 36 36 H 1.08996 * 110.97235 * 143.83039 * 23 22 21 37 37 H 1.08995 * 110.48097 * 315.31468 * 24 20 19 38 38 H 1.09004 * 110.47487 * 77.80590 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1676 -1.5864 -4.8166 11 1 3.1471 -0.1855 -4.8161 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4278 14 16 2.9704 0.1141 2.2861 15 8 3.7120 -0.8790 2.9813 16 8 3.5794 1.1829 1.5747 17 6 1.8961 0.8534 3.4711 18 6 0.6932 0.3929 3.8602 19 7 0.2015 1.2389 4.7759 20 6 1.0522 2.2162 4.9629 21 7 2.1229 2.0123 4.1696 22 6 3.1205 3.0788 4.3391 23 6 2.3717 4.2392 5.0292 24 6 1.2368 3.4899 5.7633 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1615 -3.4844 29 1 0.7376 -2.1444 1.9992 30 1 1.5296 -2.5968 0.4707 31 1 2.4630 -2.5819 1.9862 32 1 0.2098 -0.5032 3.4999 33 1 3.9400 2.7319 4.9686 34 1 3.4991 3.3987 3.3684 35 1 1.9676 4.9348 4.2936 36 1 3.0199 4.7555 5.7372 37 1 0.3215 4.0816 5.7550 38 1 1.5305 3.2577 6.7871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331416086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:29 Heat of formation + Delta-G solvation = -21.556247 kcal Electronic energy + Delta-G solvation = -23279.162597 eV Core-core repulsion = 19863.372312 eV Total energy + Delta-G solvation = -3415.790285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.61552 -38.43024 -38.03971 -37.45693 -37.03246 -34.57155 -33.07224 -30.98251 -29.99167 -28.42414 -27.26366 -27.05880 -23.34864 -23.17736 -22.58766 -21.29079 -19.90367 -18.86211 -18.62870 -18.13309 -17.69082 -17.11712 -16.48676 -16.24954 -15.46326 -15.29818 -15.13947 -14.91542 -14.73198 -14.43201 -14.29539 -13.84230 -13.55405 -13.35363 -13.31297 -13.20446 -13.01851 -12.74022 -12.72072 -12.64387 -12.59973 -12.22375 -12.14439 -12.07513 -11.94338 -11.29051 -11.18706 -10.89559 -10.52157 -9.93596 -9.74633 -8.12819 -6.26784 -0.74021 0.35395 1.43379 1.44789 1.46452 1.56914 1.75121 1.99214 2.44025 2.57287 2.74527 3.16360 3.38733 3.47146 3.61806 3.82703 4.02649 4.15273 4.22773 4.34928 4.46629 4.72965 4.73218 4.75990 4.83267 4.95726 4.97712 5.00799 5.04947 5.12357 5.23951 5.44737 5.59175 5.64501 5.78988 5.82213 6.08554 6.25726 6.68018 6.81037 7.42342 8.92318 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.004941 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.744896 B = 5665.165836 C = 5802.076682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.977 5.977 13 C 0.082 3.918 14 S 2.723 3.277 15 O -0.980 6.980 16 O -0.989 6.989 17 C -0.595 4.595 18 C 0.093 3.907 19 N -0.519 5.519 20 C 0.219 3.781 21 N -0.441 5.441 22 C 0.061 3.939 23 C -0.110 4.110 24 C -0.042 4.042 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.200 0.800 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.122 0.878 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 5.136 16.066 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.819 5.819 13 C -0.063 4.063 14 S 2.811 3.189 15 O -0.970 6.970 16 O -0.979 6.979 17 C -0.791 4.791 18 C -0.063 4.063 19 N -0.238 5.238 20 C -0.046 4.046 21 N -0.122 5.122 22 C -0.058 4.058 23 C -0.148 4.148 24 C -0.080 4.080 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.217 0.783 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.169 0.831 37 H 0.140 0.860 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.055 5.267 16.237 17.102 hybrid contribution 0.270 -0.378 -1.440 1.513 sum 1.325 4.888 14.797 15.640 Atomic orbital electron populations 1.21936 0.96810 1.00668 1.00181 1.18490 0.92265 0.91416 0.80825 0.95911 1.21653 1.31747 1.13185 0.90923 0.91738 1.25667 0.95121 0.95667 1.01773 1.70002 1.37345 1.23809 1.24385 0.85487 0.78243 0.78610 0.79183 1.19029 1.20074 1.21101 1.57138 1.70513 1.20877 1.33323 1.21714 1.01186 0.79749 1.03666 1.00847 0.73175 0.72739 0.72161 1.93508 1.68579 1.59547 1.75351 1.93505 1.74745 1.57357 1.72321 1.33343 1.18746 1.03042 1.24000 1.22653 0.90348 0.99601 0.93694 1.69929 1.30082 1.04596 1.19238 1.26057 0.84651 0.98875 0.95028 1.46356 1.19323 1.16882 1.29620 1.23278 0.91680 0.86293 1.04564 1.22896 0.96428 0.94716 1.00723 1.21159 1.02100 0.86265 0.98522 0.91376 0.93083 0.95519 0.92606 0.90825 0.89608 0.90380 0.78348 0.86560 0.88888 0.88603 0.83095 0.85996 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.27 8.97 71.98 0.65 -5.63 16 2 C 0.27 13.63 2.62 44.25 0.12 13.75 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 4 C -0.54 -28.66 7.99 25.60 0.20 -28.46 16 5 H 0.06 3.38 7.33 -2.91 -0.02 3.36 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -51.58 11.32 21.45 0.24 -51.33 16 8 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 N -0.98 -40.90 3.01 -520.45 -1.57 -42.47 16 13 C 0.08 2.76 9.65 127.77 1.23 3.99 16 14 S 2.72 113.01 5.83 -56.49 -0.33 112.68 16 15 O -0.98 -41.76 16.62 -128.00 -2.13 -43.88 16 16 O -0.99 -47.43 16.58 -128.00 -2.12 -49.55 16 17 C -0.60 -21.95 7.22 83.01 0.60 -21.36 16 18 C 0.09 3.22 11.75 83.52 0.98 4.21 16 19 N -0.52 -17.67 11.26 -187.34 -2.11 -19.78 16 20 C 0.22 6.20 8.58 138.36 1.19 7.39 16 21 N -0.44 -13.82 3.61 -506.11 -1.83 -15.65 16 22 C 0.06 1.30 7.78 86.75 0.67 1.98 16 23 C -0.11 -1.19 7.17 31.59 0.23 -0.96 16 24 C -0.04 -0.58 6.86 30.65 0.21 -0.37 16 25 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 26 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 27 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.07 2.00 7.71 -2.38 -0.02 1.98 16 30 H 0.09 2.99 7.02 -2.39 -0.02 2.97 16 31 H 0.08 2.46 7.02 -2.39 -0.02 2.44 16 32 H 0.20 5.90 7.63 -2.91 -0.02 5.88 16 33 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -77.20 325.64 -0.21 -77.41 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.07 Total: 11.81 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 6.53 Total: -24.07 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -5.26 Total: -129.23 kcal Atomic # 8 Polarization: -89.18 SS G_CDS: -4.25 Total: -93.43 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 113.01 SS G_CDS: -0.33 Total: 112.68 kcal Total: -77.20 -0.21 -77.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331416086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.853 kcal (2) G-P(sol) polarization free energy of solvation -77.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds