Wall clock time and date at job start Tue Mar 31 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47399 * 2 1 4 4 C 1.46502 * 119.99776 * 274.99967 * 3 2 1 5 5 C 1.50700 * 109.47095 * 280.06013 * 4 3 2 6 6 H 1.08001 * 120.00111 * 4.25632 * 5 4 3 7 7 C 1.37884 * 120.00201 * 184.25445 * 5 4 3 8 8 N 1.31518 * 119.99566 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47055 * 119.99803 * 9 7 5 12 12 H 1.48494 * 109.47199 * 239.99877 * 9 7 5 13 13 S 1.65600 * 120.00290 * 95.00133 * 3 2 1 14 14 O 1.42103 * 106.39782 * 330.08879 * 13 3 2 15 15 O 1.42099 * 106.40380 * 197.16816 * 13 3 2 16 16 N 1.65593 * 107.21807 * 83.62521 * 13 3 2 17 17 C 1.46499 * 120.00059 * 65.18851 * 16 13 3 18 18 C 1.50707 * 109.47055 * 165.46818 * 17 16 13 19 19 C 1.38643 * 120.78955 * 269.71737 * 18 17 16 20 20 C 1.38203 * 119.16510 * 179.80056 * 19 18 17 21 21 N 1.31876 * 120.75927 * 0.48764 * 20 19 18 22 22 C 1.31866 * 121.72598 * 359.74473 * 21 20 19 23 23 C 1.38202 * 120.76541 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.46993 * 300.00329 * 1 2 3 25 25 H 1.09002 * 109.47107 * 59.99687 * 1 2 3 26 26 H 1.08999 * 109.47732 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46791 * 239.99679 * 2 1 3 28 28 H 1.09002 * 109.47107 * 120.00313 * 2 1 3 29 29 H 1.08994 * 109.47166 * 40.06206 * 4 3 2 30 30 H 1.09005 * 109.47159 * 160.06295 * 4 3 2 31 31 H 0.97000 * 119.99850 * 180.02562 * 8 7 5 32 32 H 0.97008 * 120.00108 * 245.18822 * 16 13 3 33 33 H 1.08996 * 109.47388 * 285.46873 * 17 16 13 34 34 H 1.08993 * 109.47062 * 45.46789 * 17 16 13 35 35 H 1.08003 * 120.41869 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.62440 * 180.20630 * 20 19 18 37 37 H 1.08002 * 119.61262 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.41995 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4384 1.6943 -1.9429 6 1 4.0487 0.9132 -1.5142 7 6 3.8303 2.3125 -3.1114 8 7 3.0868 3.2633 -3.6337 9 14 5.4166 1.7985 -3.9533 10 1 6.0642 0.7155 -3.1703 11 1 5.1141 1.3077 -5.3218 12 1 6.3328 2.9641 -4.0368 13 16 2.4123 2.1202 1.4286 14 8 1.5767 1.5430 2.4226 15 8 2.4523 3.5152 1.1611 16 7 3.9618 1.6709 1.8020 17 6 5.0725 2.0873 0.9422 18 6 6.3766 1.8699 1.6656 19 6 6.9282 2.8709 2.4505 20 6 8.1235 2.6339 3.1023 21 7 8.7424 1.4762 2.9765 22 6 8.2496 0.5035 2.2349 23 6 7.0562 0.6663 1.5573 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3125 1.8779 -1.9115 30 1 2.1825 3.1802 -1.0657 31 1 3.3623 3.6979 -4.4559 32 1 4.1341 1.1320 2.5900 33 1 5.0630 1.4979 0.0254 34 1 4.9652 3.1436 0.6961 35 1 6.4282 3.8226 2.5541 36 1 8.5582 3.4072 3.7183 37 1 8.7850 -0.4312 2.1563 38 1 6.6575 -0.1343 0.9518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336906113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:38 Heat of formation + Delta-G solvation = -46.758578 kcal Electronic energy + Delta-G solvation = -22855.469002 eV Core-core repulsion = 19438.585862 eV Total energy + Delta-G solvation = -3416.883140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15688 -36.72735 -36.11382 -35.54664 -35.25567 -32.77670 -31.89094 -31.22572 -29.97065 -26.73603 -26.09807 -23.46904 -23.21364 -21.98709 -21.70184 -18.93847 -17.47234 -17.02558 -16.69631 -16.35546 -16.22944 -15.67840 -15.49800 -15.01835 -14.39907 -13.95040 -13.83275 -13.69756 -13.35999 -13.03568 -12.99495 -12.55365 -12.11380 -12.03812 -11.73580 -11.62649 -11.51124 -11.45494 -11.34520 -11.12626 -10.98783 -10.58823 -10.42593 -10.08945 -9.86955 -9.69048 -9.53881 -9.19695 -9.11982 -8.57141 -8.11623 -6.18356 -4.25564 1.00509 1.11040 1.40420 3.18375 3.26760 3.28120 3.46931 3.83042 4.12753 4.28696 4.41658 4.60466 4.77422 5.05586 5.11917 5.12938 5.15694 5.36114 5.52896 5.62247 5.68714 5.74466 5.81281 5.86826 6.00940 6.09573 6.22199 6.30043 6.42468 6.63792 6.67029 6.67445 7.18322 7.32216 7.38516 7.62420 7.78597 7.91301 8.08484 8.78891 9.40531 10.89507 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.007018 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.894273 B = 3988.618581 C = 5647.209413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.785 3.215 14 O -0.998 6.998 15 O -0.977 6.977 16 N -1.127 6.127 17 C 0.154 3.846 18 C -0.044 4.044 19 C -0.157 4.157 20 C 0.093 3.907 21 N -0.489 5.489 22 C 0.093 3.907 23 C -0.157 4.157 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -5.459 9.327 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.793 3.207 14 O -0.982 6.982 15 O -0.960 6.960 16 N -0.885 5.885 17 C 0.029 3.971 18 C -0.053 4.053 19 C -0.177 4.177 20 C -0.064 4.064 21 N -0.198 5.198 22 C -0.064 4.064 23 C -0.177 4.177 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.239 0.761 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.995 -4.737 9.922 12.076 hybrid contribution 0.438 -0.599 -1.052 1.287 sum 5.432 -5.335 8.870 11.690 Atomic orbital electron populations 1.22210 0.96904 1.01363 1.02520 1.20955 0.93714 0.82810 1.01993 1.57722 1.78464 1.23020 1.24060 1.19241 0.97281 0.92611 0.78894 1.21545 1.07289 1.20668 1.08543 0.91790 1.24954 0.97045 0.94724 0.97033 1.69940 1.37819 1.24093 1.20465 0.86592 0.83436 0.78599 0.79708 1.19607 1.20892 1.20822 1.01782 0.72506 0.73748 0.72672 1.93558 1.65198 1.79784 1.59662 1.93580 1.86425 1.30861 1.85169 1.56063 1.24673 1.70276 1.37481 1.20381 0.81319 1.02840 0.92577 1.20495 0.96169 0.93518 0.95160 1.22213 0.97279 1.00526 0.97712 1.22746 0.92149 0.94436 0.97062 1.67650 1.33944 1.01211 1.17028 1.22739 0.93287 0.97678 0.92688 1.22189 0.96533 0.98160 1.00825 0.92472 0.92069 0.92431 0.90112 0.92208 0.94690 0.92554 0.92548 0.76093 0.88217 0.88940 0.84393 0.82799 0.82822 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.16 6.02 -4.05 -0.02 2.14 16 3 N -0.99 -19.17 2.84 -115.66 -0.33 -19.50 16 4 C 0.24 5.66 5.46 -5.19 -0.03 5.63 16 5 C -0.54 -13.12 8.51 -34.44 -0.29 -13.41 16 6 H 0.06 1.46 6.46 -52.49 -0.34 1.12 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 9 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 S 2.79 52.34 6.07 -107.50 -0.65 51.69 16 14 O -1.00 -19.58 17.17 -57.17 -0.98 -20.57 16 15 O -0.98 -21.80 16.01 -57.17 -0.92 -22.71 16 16 N -1.13 -17.14 6.05 -11.66 -0.07 -17.21 16 17 C 0.15 2.42 6.38 -5.19 -0.03 2.38 16 18 C -0.04 -0.59 5.31 -104.32 -0.55 -1.15 16 19 C -0.16 -1.95 9.82 -39.44 -0.39 -2.34 16 20 C 0.09 1.09 11.18 -17.55 -0.20 0.90 16 21 N -0.49 -6.36 10.36 -13.25 -0.14 -6.49 16 22 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 23 C -0.16 -1.92 9.82 -39.44 -0.39 -2.30 16 24 H 0.06 0.91 7.96 -51.93 -0.41 0.50 16 25 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 28 H 0.06 0.86 7.78 -51.93 -0.40 0.45 16 29 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.41 5.21 8.64 -34.47 -0.30 4.92 16 33 H 0.10 1.68 5.82 -51.93 -0.30 1.38 16 34 H 0.09 1.58 7.71 -51.93 -0.40 1.18 16 35 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -31.09 336.16 -9.14 -40.23 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.02 Total: 6.34 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.82 Total: -7.88 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: 0.20 Total: -66.83 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.90 Total: -43.28 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 52.34 SS G_CDS: -0.65 Total: 51.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.09 -9.14 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336906113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.525 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds