Wall clock time and date at job start Tue Mar 31 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00304 * 2 1 4 4 O 1.20826 * 119.99789 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00035 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46810 * 186.00491 * 5 3 2 7 7 C 1.36934 * 120.00311 * 83.15287 * 6 5 3 8 8 H 1.08007 * 119.99782 * 166.97305 * 7 6 5 9 9 C 1.38806 * 120.00195 * 346.97953 * 7 6 5 10 10 N 1.31625 * 119.99874 * 359.40545 * 9 7 6 11 11 Si 1.86801 * 120.00341 * 179.40509 * 9 7 6 12 12 H 1.48498 * 109.47034 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46984 * 119.99542 * 11 9 7 14 14 H 1.48498 * 109.47180 * 239.99650 * 11 9 7 15 15 C 1.46503 * 119.99702 * 263.14947 * 6 5 3 16 16 C 1.50696 * 109.47660 * 274.57833 * 15 6 5 17 17 O 1.21237 * 119.99691 * 354.77531 * 16 15 6 18 18 N 1.34772 * 120.00238 * 175.05090 * 16 15 6 19 19 C 1.34780 * 119.99897 * 179.72280 * 18 16 15 20 20 O 1.21540 * 119.99859 * 0.02562 * 19 18 16 21 21 N 1.34772 * 119.99897 * 180.02562 * 19 18 16 22 22 C 1.46507 * 120.00021 * 180.02562 * 21 19 18 23 23 C 1.52995 * 117.49812 * 223.74417 * 22 21 19 24 24 C 1.52998 * 117.49752 * 155.08605 * 22 21 19 25 25 H 1.09002 * 109.47002 * 299.99563 * 1 2 3 26 26 H 1.09000 * 109.46985 * 59.99832 * 1 2 3 27 27 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46682 * 66.00330 * 5 3 2 29 29 H 1.08999 * 109.47265 * 305.99758 * 5 3 2 30 30 H 0.96995 * 120.00054 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.46866 * 154.57315 * 15 6 5 32 32 H 1.09009 * 109.46843 * 34.57891 * 15 6 5 33 33 H 0.97002 * 120.00030 * 359.72224 * 18 16 15 34 34 H 0.97002 * 120.00030 * 359.97438 * 21 19 18 35 35 H 1.08999 * 115.54771 * 9.41956 * 22 21 19 36 36 H 1.09006 * 117.50244 * 0.02562 * 23 22 21 37 37 H 1.09006 * 117.49363 * 145.01676 * 23 22 21 38 38 H 1.09000 * 117.49834 * 214.98134 * 24 22 21 39 39 H 1.08998 * 117.49937 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9821 2.6721 0.1450 7 6 4.0468 3.2423 1.3883 8 1 4.5469 4.1901 1.5223 9 6 3.4698 2.6020 2.4763 10 7 2.8503 1.4525 2.3110 11 14 3.5725 3.3717 4.1753 12 1 4.3167 4.6541 4.0936 13 1 2.2019 3.6260 4.6871 14 1 4.2809 2.4466 5.0959 15 6 4.3287 3.4594 -1.0409 16 6 5.7750 3.2260 -1.3939 17 8 6.4747 2.5520 -0.6688 18 7 6.2920 3.7711 -2.5128 19 6 7.5870 3.5669 -2.8256 20 8 8.2884 2.8909 -2.0988 21 7 8.1042 4.1125 -3.9442 22 6 9.5117 3.8901 -4.2845 23 6 10.3194 5.0944 -4.7722 24 6 9.9078 3.9984 -5.7583 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9513 0.8762 -0.9380 29 1 3.9605 0.6907 0.8323 30 1 2.4468 1.0053 3.0712 31 1 4.1716 4.5178 -0.8329 32 1 3.6972 3.1556 -1.8760 33 1 5.7321 4.3104 -3.0930 34 1 7.5443 4.6517 -4.5244 35 1 10.0307 3.1486 -3.6770 36 1 9.8037 6.0524 -4.8396 37 1 11.3699 5.1452 -4.4859 38 1 10.6877 3.3285 -6.1204 39 1 9.1212 4.2347 -6.4748 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348483599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:09 Heat of formation + Delta-G solvation = -75.597961 kcal Electronic energy + Delta-G solvation = -24568.286511 eV Core-core repulsion = 20707.399930 eV Total energy + Delta-G solvation = -3860.886581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75250 -38.91687 -38.43433 -36.94019 -35.67786 -34.38679 -34.21041 -32.48647 -31.44467 -28.55749 -27.08688 -25.96145 -23.78587 -22.68464 -22.12218 -21.09499 -20.13536 -19.70756 -18.79425 -17.04858 -16.88331 -16.28066 -15.92845 -15.64153 -15.48492 -15.01097 -14.86586 -14.64818 -14.39779 -13.97219 -13.58685 -13.23983 -13.01027 -12.91299 -12.28188 -12.16125 -11.90274 -11.64323 -11.35207 -11.08490 -10.97628 -10.86532 -10.79025 -10.59117 -10.42794 -10.12729 -10.04333 -9.68753 -9.56112 -9.39297 -8.96905 -8.90172 -8.57683 -7.20909 -5.90935 -3.33747 2.45689 2.57229 3.37615 3.42333 3.45260 3.46843 3.81035 3.84786 4.02963 4.17307 4.46830 4.50425 4.68211 4.71928 5.18586 5.25538 5.31554 5.46377 5.49065 5.62443 5.76577 5.85583 5.90350 5.92709 6.07635 6.15608 6.28185 6.35422 6.43936 6.76837 6.82853 7.30040 7.58258 7.67082 7.86468 8.11725 8.54788 8.67338 8.97068 9.47887 9.60910 9.97443 11.15619 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.003690 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.756745 B = 7586.183046 C = 8631.510955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.481 3.519 4 O -0.533 6.533 5 C 0.195 3.805 6 N -0.549 5.549 7 C -0.233 4.233 8 H 0.082 0.918 9 C 0.000 4.000 10 N -0.919 5.919 11 Si 0.928 3.072 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.288 1.288 15 C 0.138 3.862 16 C 0.472 3.528 17 O -0.446 6.446 18 N -0.696 5.696 19 C 0.694 3.306 20 O -0.532 6.532 21 N -0.717 5.717 22 C 0.100 3.900 23 C -0.196 4.196 24 C -0.191 4.191 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.129 0.871 30 H 0.260 0.740 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.404 0.596 34 H 0.397 0.603 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 4.806 -16.243 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.323 3.677 4 O -0.420 6.420 5 C 0.067 3.933 6 N -0.266 5.266 7 C -0.361 4.361 8 H 0.100 0.900 9 C -0.195 4.195 10 N -0.568 5.568 11 Si 0.758 3.242 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.214 1.214 15 C 0.005 3.995 16 C 0.255 3.745 17 O -0.310 6.310 18 N -0.364 5.364 19 C 0.394 3.606 20 O -0.404 6.404 21 N -0.373 5.373 22 C -0.007 4.007 23 C -0.235 4.235 24 C -0.230 4.230 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.146 0.854 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.237 0.763 34 H 0.231 0.769 35 H 0.157 0.843 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.131 3.921 -14.810 16.502 hybrid contribution -0.878 1.131 0.212 1.448 sum 5.253 5.052 -14.598 16.316 Atomic orbital electron populations 1.22814 0.80128 1.01132 1.00974 1.86515 1.20549 1.36471 1.85740 1.24914 0.93055 0.80044 0.69716 1.90432 1.66879 1.36536 1.48177 1.20434 0.85500 0.86416 1.00985 1.43490 1.72935 1.08303 1.01840 1.19410 1.28719 1.04396 0.83605 0.89988 1.24821 0.98351 0.97162 0.99175 1.69419 1.40752 1.16751 1.29879 0.85795 0.77124 0.78349 0.82890 1.20313 1.21647 1.21436 1.20752 0.88194 0.98605 0.91992 1.23840 0.93139 0.78939 0.78535 1.90789 1.60742 1.32962 1.46519 1.44796 1.10559 1.53339 1.27733 1.16340 0.82370 0.80436 0.81460 1.91052 1.58858 1.40421 1.50057 1.44685 1.11007 1.56127 1.25461 1.21440 0.81836 1.00854 0.96535 1.23464 1.01435 0.94562 1.04062 1.23408 1.03908 1.02747 0.92920 0.93099 0.93828 0.90277 0.93925 0.85382 0.92844 0.88841 0.90606 0.76256 0.76916 0.84294 0.88524 0.87995 0.87871 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.56 101.05 1.07 1.88 16 2 O -0.38 -8.45 10.56 -39.24 -0.41 -8.87 16 3 C 0.48 11.93 5.47 36.01 0.20 12.12 16 4 O -0.53 -14.44 16.02 -18.75 -0.30 -14.74 16 5 C 0.19 4.75 5.63 -5.19 -0.03 4.72 16 6 N -0.55 -13.43 1.56 -175.98 -0.27 -13.70 16 7 C -0.23 -6.30 9.67 -15.06 -0.15 -6.45 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 C 0.00 -0.01 5.36 -17.43 -0.09 -0.10 16 10 N -0.92 -25.92 7.91 55.49 0.44 -25.48 16 11 Si 0.93 22.39 29.55 -169.99 -5.02 17.37 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.14 2.57 6.12 -5.19 -0.03 2.54 16 16 C 0.47 8.94 7.83 -10.99 -0.09 8.86 16 17 O -0.45 -11.06 14.84 -18.21 -0.27 -11.33 16 18 N -0.70 -9.56 5.24 -15.78 -0.08 -9.64 16 19 C 0.69 10.70 8.50 -86.92 -0.74 9.96 16 20 O -0.53 -11.29 14.31 -18.47 -0.26 -11.55 16 21 N -0.72 -7.38 5.57 -58.68 -0.33 -7.70 16 22 C 0.10 0.98 6.43 -67.93 -0.44 0.55 16 23 C -0.20 -1.43 10.46 -26.70 -0.28 -1.71 16 24 C -0.19 -1.29 10.46 -26.70 -0.28 -1.57 16 25 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 29 H 0.13 3.48 6.31 -51.93 -0.33 3.15 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.09 1.58 8.00 -51.93 -0.42 1.16 16 32 H 0.08 1.21 8.11 -51.92 -0.42 0.79 16 33 H 0.40 3.38 8.71 -40.82 -0.36 3.02 16 34 H 0.40 2.59 8.84 -40.82 -0.36 2.23 16 35 H 0.14 1.65 7.40 -51.93 -0.38 1.27 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -38.49 341.87 -7.41 -45.90 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.19 Total: 3.80 kcal Atomic # 6 Polarization: 31.66 SS G_CDS: -0.86 Total: 30.80 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.25 Total: -56.53 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -1.25 Total: -46.49 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.49 -7.41 -45.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348483599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.696 kcal (2) G-P(sol) polarization free energy of solvation -38.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds