Wall clock time and date at job start Tue Mar 31 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00141 * 2 1 4 4 O 1.20827 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99986 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46811 * 180.02562 * 5 3 2 7 7 C 1.37101 * 119.99619 * 95.86428 * 6 5 3 8 8 H 1.08008 * 120.00089 * 162.40420 * 7 6 5 9 9 C 1.38947 * 120.00271 * 342.38884 * 7 6 5 10 10 N 1.31408 * 120.00193 * 342.44543 * 9 7 6 11 11 Si 1.86802 * 119.99901 * 162.43477 * 9 7 6 12 12 H 1.48497 * 109.47089 * 60.00905 * 11 9 7 13 13 H 1.48500 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47621 * 300.00836 * 11 9 7 15 15 C 1.34771 * 120.00103 * 275.85718 * 6 5 3 16 16 O 1.21290 * 120.00137 * 0.02562 * 15 6 5 17 17 C 1.50704 * 120.00197 * 179.97438 * 15 6 5 18 18 H 1.09008 * 112.84422 * 13.91834 * 17 15 6 19 19 C 1.53777 * 113.61898 * 242.72449 * 17 15 6 20 20 C 1.54058 * 86.98026 * 270.83783 * 19 17 15 21 21 C 1.53777 * 87.07919 * 334.56620 * 20 19 17 22 22 H 1.09004 * 113.61442 * 270.88401 * 21 20 19 23 23 C 1.50690 * 113.69097 * 139.99000 * 21 20 19 24 24 O 1.20828 * 120.00118 * 1.87312 * 23 21 20 25 25 O 1.34236 * 120.00257 * 181.87562 * 23 21 20 26 26 C 1.45198 * 117.00103 * 180.02562 * 25 23 21 27 27 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47206 * 59.99452 * 1 2 3 29 29 H 1.09005 * 109.47084 * 299.99631 * 1 2 3 30 30 H 1.08997 * 109.47254 * 300.00191 * 5 3 2 31 31 H 1.08991 * 109.47189 * 60.00763 * 5 3 2 32 32 H 0.97001 * 120.00275 * 179.97438 * 10 9 7 33 33 H 1.08998 * 113.61399 * 25.42364 * 19 17 15 34 34 H 1.08993 * 113.61654 * 156.33440 * 19 17 15 35 35 H 1.09002 * 113.61396 * 220.01522 * 20 19 17 36 36 H 1.09000 * 113.69000 * 89.12849 * 20 19 17 37 37 H 1.08998 * 109.47292 * 299.99529 * 26 25 23 38 38 H 1.09000 * 109.47442 * 59.99819 * 26 25 23 39 39 H 1.09003 * 109.46711 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2919 3.3024 1.1825 8 1 4.8593 4.2214 1.1759 9 6 3.8762 2.7513 2.3884 10 7 2.9170 1.8533 2.4044 11 14 4.6810 3.2868 3.9868 12 1 4.4867 4.7471 4.1739 13 1 4.0628 2.5554 5.1217 14 1 6.1338 2.9834 3.9355 15 6 4.0590 3.3600 -1.1598 16 8 3.7842 2.8093 -2.2049 17 6 4.4856 4.8054 -1.1592 18 1 4.9309 5.1149 -0.2136 19 6 3.4024 5.7678 -1.6742 20 6 3.9853 5.5408 -3.0821 21 6 5.3166 5.2028 -2.3906 22 1 5.9552 6.0706 -2.2249 23 6 6.0507 4.0481 -3.0219 24 8 5.5960 3.5062 -4.0015 25 8 7.2096 3.6213 -2.4959 26 6 7.8618 2.5048 -3.1564 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 3.9557 0.7809 0.8908 31 1 3.9564 0.7807 -0.8891 32 1 2.6270 1.4683 3.2462 33 1 2.3879 5.3879 -1.5538 34 1 3.5186 6.7895 -1.3130 35 1 4.0257 6.4454 -3.6889 36 1 3.5405 4.6969 -3.6094 37 1 7.1993 1.6393 -3.1462 38 1 8.0901 2.7754 -4.1873 39 1 8.7858 2.2617 -2.6318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353259690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:57 Heat of formation + Delta-G solvation = -161.279439 kcal Electronic energy + Delta-G solvation = -26226.633542 eV Core-core repulsion = 22329.738782 eV Total energy + Delta-G solvation = -3896.894760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61462 -39.38375 -38.67579 -36.89018 -35.66587 -35.18404 -34.56627 -31.58797 -28.87036 -28.22830 -26.70416 -25.86613 -25.55602 -24.33851 -21.32697 -20.64304 -19.70284 -18.78929 -17.53466 -16.89920 -16.56534 -16.47254 -15.84441 -15.62339 -15.40806 -15.21380 -14.70051 -14.18444 -13.98034 -13.70507 -13.55697 -12.79410 -12.59676 -12.47905 -12.29836 -12.25012 -11.71205 -11.57061 -11.42075 -11.32355 -11.23085 -10.90831 -10.79167 -10.71269 -10.55471 -10.42877 -10.32886 -9.81027 -9.77579 -9.64827 -9.55154 -9.02466 -8.47937 -7.97441 -6.51570 -4.03092 2.80264 3.06856 3.16329 3.17633 3.18964 3.43805 3.70050 3.91330 4.06060 4.50187 4.83040 4.88538 5.05208 5.33921 5.38466 5.42341 5.45339 5.52632 5.70780 5.78091 5.78810 5.90147 5.94622 5.98049 6.14450 6.23339 6.26533 6.41475 6.44570 6.48589 6.66137 6.88386 6.90339 7.31848 7.46119 7.58061 8.19709 8.35284 8.95242 9.11172 9.32696 9.73085 10.55540 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.006740 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.659348 B = 4153.298704 C = 5013.409172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.487 3.513 4 O -0.501 6.501 5 C 0.158 3.842 6 N -0.423 5.423 7 C -0.334 4.334 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.874 5.874 11 Si 0.928 3.072 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.478 3.522 16 O -0.582 6.582 17 C -0.100 4.100 18 H 0.108 0.892 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.096 4.096 22 H 0.120 0.880 23 C 0.473 3.527 24 O -0.487 6.487 25 O -0.363 6.363 26 C 0.039 3.961 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.273 0.727 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 2.117 -3.367 6.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.328 3.672 4 O -0.386 6.386 5 C 0.032 3.968 6 N -0.141 5.141 7 C -0.461 4.461 8 H 0.124 0.876 9 C -0.167 4.167 10 N -0.512 5.512 11 Si 0.754 3.246 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.266 3.734 16 O -0.466 6.466 17 C -0.121 4.121 18 H 0.126 0.874 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.115 4.115 22 H 0.138 0.862 23 C 0.315 3.685 24 O -0.372 6.372 25 O -0.280 6.280 26 C -0.055 4.055 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.969 1.822 -4.022 5.937 hybrid contribution 0.061 0.108 1.123 1.129 sum 4.029 1.929 -2.900 5.326 Atomic orbital electron populations 1.22927 0.78741 1.01786 1.01602 1.86455 1.21656 1.35525 1.85700 1.23912 0.92230 0.80541 0.70469 1.90504 1.66500 1.36367 1.45205 1.20479 0.87279 0.85504 1.03498 1.43329 1.56755 1.07977 1.06077 1.19657 1.33833 1.10348 0.82282 0.87628 1.25229 0.94843 0.96940 0.99737 1.69775 1.24234 1.29114 1.28092 0.85980 0.79329 0.78876 0.80426 1.19759 1.20916 1.19684 1.19580 0.82574 0.87156 0.84040 1.90641 1.54693 1.69747 1.31539 1.22268 0.97110 0.95025 0.97707 0.87444 1.22716 0.99240 0.98267 0.95456 1.23013 0.92903 1.02426 0.96776 1.22487 0.95564 0.95039 0.98428 0.86202 1.23372 0.78504 0.84320 0.82299 1.90608 1.65180 1.55445 1.25931 1.86506 1.36394 1.48489 1.56627 1.23128 0.97051 0.87985 0.97376 0.89627 0.93178 0.92637 0.85648 0.90381 0.91604 0.90271 0.89565 0.91472 0.87335 0.92009 0.92612 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.29 10.57 -39.26 -0.41 -8.71 16 3 C 0.49 12.25 6.10 36.01 0.22 12.47 16 4 O -0.50 -13.98 15.80 -18.75 -0.30 -14.28 16 5 C 0.16 3.85 5.14 -5.19 -0.03 3.82 16 6 N -0.42 -10.57 2.18 -116.10 -0.25 -10.82 16 7 C -0.33 -8.19 9.18 -14.93 -0.14 -8.32 16 8 H 0.11 2.40 5.69 -52.48 -0.30 2.10 16 9 C 0.04 0.90 4.97 -17.47 -0.09 0.81 16 10 N -0.87 -22.33 9.08 55.50 0.50 -21.82 16 11 Si 0.93 18.88 29.59 -169.99 -5.03 13.85 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 C 0.48 11.51 6.09 -10.99 -0.07 11.44 16 16 O -0.58 -15.28 12.91 -13.35 -0.17 -15.46 16 17 C -0.10 -1.95 3.79 -90.96 -0.34 -2.29 16 18 H 0.11 2.00 5.76 -51.92 -0.30 1.70 16 19 C -0.12 -2.03 7.68 -25.77 -0.20 -2.23 16 20 C -0.11 -1.92 6.97 -25.77 -0.18 -2.10 16 21 C -0.10 -1.63 4.20 -90.97 -0.38 -2.01 16 22 H 0.12 1.58 8.14 -51.93 -0.42 1.15 16 23 C 0.47 9.20 5.79 36.00 0.21 9.41 16 24 O -0.49 -10.72 14.55 -25.19 -0.37 -11.09 16 25 O -0.36 -6.47 10.57 -39.27 -0.41 -6.88 16 26 C 0.04 0.55 10.56 101.05 1.07 1.62 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 30 H 0.13 3.02 6.32 -51.93 -0.33 2.69 16 31 H 0.08 1.82 7.61 -51.93 -0.39 1.42 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 2.22 6.41 -51.93 -0.33 1.89 16 37 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 38 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -33.03 329.02 -5.36 -38.39 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.01 Total: 7.39 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 1.14 Total: 24.47 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.25 Total: -32.64 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -1.66 Total: -56.41 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.03 -5.36 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.888 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds