Wall clock time and date at job start Tue Mar 31 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99918 * 2 1 4 4 O 1.20821 * 119.99717 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99904 * 179.72575 * 3 2 1 6 6 N 1.46494 * 109.47242 * 173.23160 * 5 3 2 7 7 C 1.37099 * 120.00334 * 96.26080 * 6 5 3 8 8 H 1.08003 * 120.00001 * 219.94921 * 7 6 5 9 9 C 1.38951 * 119.99686 * 39.94865 * 7 6 5 10 10 N 1.31415 * 119.99813 * 211.09600 * 9 7 6 11 11 Si 1.86794 * 120.00219 * 31.10123 * 9 7 6 12 12 H 1.48500 * 109.47108 * 95.07726 * 11 9 7 13 13 H 1.48504 * 109.47106 * 215.07753 * 11 9 7 14 14 H 1.48494 * 109.47306 * 335.07496 * 11 9 7 15 15 C 1.34783 * 119.99661 * 276.26150 * 6 5 3 16 16 O 1.21287 * 119.99932 * 359.97438 * 15 6 5 17 17 C 1.50699 * 119.99523 * 180.02562 * 15 6 5 18 18 H 1.08998 * 112.85106 * 309.65992 * 17 15 6 19 19 C 1.53775 * 113.61842 * 80.86279 * 17 15 6 20 20 C 1.53782 * 87.08327 * 139.97603 * 19 17 15 21 21 C 1.53788 * 113.60895 * 178.47161 * 17 15 6 22 22 H 1.08994 * 113.61258 * 334.56219 * 21 17 15 23 23 C 1.50703 * 113.61529 * 105.47083 * 21 17 15 24 24 O 1.20825 * 119.99675 * 359.97438 * 23 21 17 25 25 O 1.34225 * 119.99709 * 179.97438 * 23 21 17 26 26 C 1.45208 * 116.99828 * 179.97438 * 25 23 21 27 27 H 1.08996 * 109.46748 * 60.01005 * 1 2 3 28 28 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47262 * 300.00653 * 1 2 3 30 30 H 1.09005 * 109.46880 * 293.22656 * 5 3 2 31 31 H 1.08996 * 109.47443 * 53.22427 * 5 3 2 32 32 H 0.96993 * 119.99982 * 179.97438 * 10 9 7 33 33 H 1.08999 * 113.61860 * 254.52770 * 19 17 15 34 34 H 1.09004 * 113.61148 * 25.43146 * 19 17 15 35 35 H 1.09002 * 113.61412 * 89.11547 * 20 19 17 36 36 H 1.09002 * 113.61719 * 220.02287 * 20 19 17 37 37 H 1.09004 * 109.46928 * 59.99542 * 26 25 23 38 38 H 1.08997 * 109.47258 * 179.97438 * 26 25 23 39 39 H 1.09000 * 109.46934 * 300.00217 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2749 0.0062 6 7 3.9829 2.6697 -0.1578 7 6 4.2897 3.4275 0.9428 8 1 3.9804 4.4612 0.9899 9 6 4.9986 2.8656 1.9975 10 7 4.7936 3.2867 3.2253 11 14 6.2433 1.5117 1.6701 12 1 7.5985 2.1054 1.5429 13 1 6.2303 0.5444 2.7968 14 1 5.8905 0.8090 0.4104 15 6 4.0645 3.2080 -1.3907 16 8 3.7936 2.5375 -2.3644 17 6 4.4937 4.6428 -1.5595 18 1 3.9371 5.3289 -0.9212 19 6 6.0172 4.8416 -1.4967 20 6 5.8532 5.8549 -2.6417 21 6 4.5719 5.0936 -3.0277 22 1 4.7440 4.2755 -3.7270 23 6 3.4365 5.9927 -3.4445 24 8 2.5783 6.2908 -2.6479 25 8 3.3786 6.4621 -4.7006 26 6 2.2565 7.3222 -5.0318 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8898 30 1 3.9463 0.8912 0.9531 31 1 3.9649 0.6777 -0.8139 32 1 5.2881 2.8942 3.9616 33 1 6.3612 5.2886 -0.5639 34 1 6.5852 3.9544 -1.7768 35 1 5.6682 6.8734 -2.3003 36 1 6.6404 5.7957 -3.3933 37 1 2.2723 8.2033 -4.3902 38 1 2.3308 7.6311 -6.0745 39 1 1.3244 6.7783 -4.8792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353259692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:01 Heat of formation + Delta-G solvation = -166.663562 kcal Electronic energy + Delta-G solvation = -25520.556787 eV Core-core repulsion = 21623.428555 eV Total energy + Delta-G solvation = -3897.128233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68475 -39.91280 -39.01202 -37.17974 -36.00085 -35.72610 -34.81728 -32.09829 -29.25069 -28.38433 -27.01621 -26.01480 -25.72814 -24.50565 -21.40900 -20.99295 -19.65553 -18.87584 -17.80193 -17.35107 -17.06669 -16.73379 -16.29627 -16.06358 -15.79143 -15.34909 -15.12511 -14.46179 -14.14418 -13.71485 -13.40664 -13.13992 -12.97448 -12.75548 -12.69193 -12.60204 -12.04052 -11.89200 -11.73618 -11.59080 -11.36569 -11.14407 -11.05375 -10.82813 -10.65391 -10.59410 -10.30483 -10.23011 -10.05730 -9.91585 -9.79904 -9.26335 -8.68857 -7.95109 -6.63035 -4.16029 2.48197 2.89425 2.91773 3.02981 3.05694 3.15915 3.22463 3.69608 4.02052 4.24000 4.69667 4.75828 4.84386 5.06591 5.16177 5.23151 5.26533 5.37566 5.40591 5.48428 5.50654 5.60070 5.76345 5.82399 5.85883 5.95448 5.99304 6.08422 6.16112 6.33092 6.42571 6.57944 6.77294 6.89950 7.13948 7.92075 8.03207 8.20192 8.44794 8.83963 9.19209 9.52384 10.47318 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.006204 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.190687 B = 4512.268554 C = 5892.286354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.371 6.371 3 C 0.445 3.555 4 O -0.488 6.488 5 C 0.123 3.877 6 N -0.441 5.441 7 C -0.350 4.350 8 H 0.105 0.895 9 C 0.075 3.925 10 N -0.835 5.835 11 Si 0.848 3.152 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.502 3.498 16 O -0.594 6.594 17 C -0.083 4.083 18 H 0.124 0.876 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.095 4.095 22 H 0.134 0.866 23 C 0.472 3.528 24 O -0.500 6.500 25 O -0.361 6.361 26 C 0.034 3.966 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.277 0.723 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 0.883 -9.481 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.285 3.715 4 O -0.372 6.372 5 C -0.003 4.003 6 N -0.161 5.161 7 C -0.476 4.476 8 H 0.122 0.878 9 C -0.135 4.135 10 N -0.468 5.468 11 Si 0.672 3.328 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.179 1.179 15 C 0.293 3.707 16 O -0.478 6.478 17 C -0.104 4.104 18 H 0.141 0.859 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.114 4.114 22 H 0.151 0.849 23 C 0.314 3.686 24 O -0.386 6.386 25 O -0.278 6.278 26 C -0.060 4.060 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.068 0.975 -9.477 9.527 hybrid contribution -0.013 -0.499 0.256 0.561 sum 0.055 0.476 -9.221 9.234 Atomic orbital electron populations 1.23117 0.77704 1.02726 1.02215 1.86520 1.22566 1.34675 1.85009 1.24926 0.93067 0.81173 0.72309 1.90636 1.66609 1.36241 1.43728 1.21391 0.86135 0.88472 1.04271 1.43273 1.57490 1.09194 1.06122 1.18955 1.36725 0.97625 0.94319 0.87802 1.25361 0.96634 0.97225 0.94276 1.69945 1.36252 1.41983 0.98587 0.87345 0.83682 0.82382 0.79440 1.19573 1.20429 1.17897 1.20218 0.79106 0.89018 0.82393 1.90540 1.54641 1.63280 1.39362 1.22348 0.98579 0.95773 0.93688 0.85856 1.22659 0.94308 0.98901 0.99053 1.22894 0.95079 0.98833 0.99073 1.22642 0.92030 0.97791 0.98965 0.84871 1.23795 0.86598 0.78637 0.79527 1.90679 1.39301 1.56031 1.52629 1.86524 1.47991 1.61194 1.32129 1.23206 0.88077 0.93404 1.01307 0.92428 0.88783 0.92247 0.87392 0.87673 0.91312 0.89270 0.89615 0.89651 0.90053 0.92109 0.88460 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.10 10.57 -39.26 -0.41 -7.52 16 3 C 0.44 10.12 7.96 36.01 0.29 10.41 16 4 O -0.49 -12.62 16.15 -18.75 -0.30 -12.93 16 5 C 0.12 2.75 4.08 -5.20 -0.02 2.73 16 6 N -0.44 -10.65 1.63 -116.10 -0.19 -10.83 16 7 C -0.35 -8.91 8.81 -14.93 -0.13 -9.04 16 8 H 0.10 2.86 7.12 -52.48 -0.37 2.48 16 9 C 0.07 1.88 5.03 -17.47 -0.09 1.79 16 10 N -0.84 -22.13 13.96 55.50 0.77 -21.36 16 11 Si 0.85 18.27 26.35 -169.99 -4.48 13.79 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.25 -5.28 5.84 56.52 0.33 -4.95 16 15 C 0.50 11.75 7.05 -10.98 -0.08 11.67 16 16 O -0.59 -14.70 15.59 5.55 0.09 -14.61 16 17 C -0.08 -1.65 2.36 -90.96 -0.21 -1.86 16 18 H 0.12 2.66 6.64 -51.93 -0.34 2.32 16 19 C -0.11 -1.79 7.51 -25.92 -0.19 -1.98 16 20 C -0.12 -1.63 7.64 -25.82 -0.20 -1.83 16 21 C -0.09 -1.61 3.58 -90.86 -0.33 -1.93 16 22 H 0.13 2.25 7.45 -51.93 -0.39 1.86 16 23 C 0.47 8.42 7.49 36.01 0.27 8.69 16 24 O -0.50 -10.51 15.65 -18.75 -0.29 -10.80 16 25 O -0.36 -5.48 10.57 -39.24 -0.41 -5.89 16 26 C 0.03 0.40 10.56 101.05 1.07 1.46 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.11 2.33 4.82 -51.93 -0.25 2.08 16 31 H 0.11 2.19 7.58 -51.93 -0.39 1.80 16 32 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 35 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -32.85 336.36 -3.90 -36.75 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.18 Total: 6.62 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 1.44 Total: 21.72 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.59 Total: -32.19 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -1.34 Total: -51.75 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -4.48 Total: 13.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.85 -3.90 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.915 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds