Wall clock time and date at job start Tue Mar 31 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99918 * 2 1 4 4 O 1.20821 * 119.99717 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99904 * 179.72575 * 3 2 1 6 6 N 1.46494 * 109.47242 * 173.23160 * 5 3 2 7 7 C 1.37099 * 120.00334 * 96.26080 * 6 5 3 8 8 H 1.08003 * 120.00001 * 219.94921 * 7 6 5 9 9 C 1.38951 * 119.99686 * 39.94865 * 7 6 5 10 10 N 1.31415 * 119.99813 * 211.09600 * 9 7 6 11 11 Si 1.86794 * 120.00219 * 31.10123 * 9 7 6 12 12 H 1.48500 * 109.47108 * 95.07726 * 11 9 7 13 13 H 1.48504 * 109.47106 * 215.07753 * 11 9 7 14 14 H 1.48494 * 109.47306 * 335.07496 * 11 9 7 15 15 C 1.34783 * 119.99661 * 276.26150 * 6 5 3 16 16 O 1.21287 * 119.99932 * 359.97438 * 15 6 5 17 17 C 1.50699 * 119.99523 * 180.02562 * 15 6 5 18 18 H 1.08998 * 112.85106 * 309.65992 * 17 15 6 19 19 C 1.53775 * 113.61842 * 80.86279 * 17 15 6 20 20 C 1.53782 * 87.08327 * 139.97603 * 19 17 15 21 21 C 1.53788 * 113.60895 * 178.47161 * 17 15 6 22 22 H 1.08994 * 113.61258 * 334.56219 * 21 17 15 23 23 C 1.50703 * 113.61529 * 105.47083 * 21 17 15 24 24 O 1.20825 * 119.99675 * 359.97438 * 23 21 17 25 25 O 1.34225 * 119.99709 * 179.97438 * 23 21 17 26 26 C 1.45208 * 116.99828 * 179.97438 * 25 23 21 27 27 H 1.08996 * 109.46748 * 60.01005 * 1 2 3 28 28 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47262 * 300.00653 * 1 2 3 30 30 H 1.09005 * 109.46880 * 293.22656 * 5 3 2 31 31 H 1.08996 * 109.47443 * 53.22427 * 5 3 2 32 32 H 0.96993 * 119.99982 * 179.97438 * 10 9 7 33 33 H 1.08999 * 113.61860 * 254.52770 * 19 17 15 34 34 H 1.09004 * 113.61148 * 25.43146 * 19 17 15 35 35 H 1.09002 * 113.61412 * 89.11547 * 20 19 17 36 36 H 1.09002 * 113.61719 * 220.02287 * 20 19 17 37 37 H 1.09004 * 109.46928 * 59.99542 * 26 25 23 38 38 H 1.08997 * 109.47258 * 179.97438 * 26 25 23 39 39 H 1.09000 * 109.46934 * 300.00217 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2749 0.0062 6 7 3.9829 2.6697 -0.1578 7 6 4.2897 3.4275 0.9428 8 1 3.9804 4.4612 0.9899 9 6 4.9986 2.8656 1.9975 10 7 4.7936 3.2867 3.2253 11 14 6.2433 1.5117 1.6701 12 1 7.5985 2.1054 1.5429 13 1 6.2303 0.5444 2.7968 14 1 5.8905 0.8090 0.4104 15 6 4.0645 3.2080 -1.3907 16 8 3.7936 2.5375 -2.3644 17 6 4.4937 4.6428 -1.5595 18 1 3.9371 5.3289 -0.9212 19 6 6.0172 4.8416 -1.4967 20 6 5.8532 5.8549 -2.6417 21 6 4.5719 5.0936 -3.0277 22 1 4.7440 4.2755 -3.7270 23 6 3.4365 5.9927 -3.4445 24 8 2.5783 6.2908 -2.6479 25 8 3.3786 6.4621 -4.7006 26 6 2.2565 7.3222 -5.0318 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8898 30 1 3.9463 0.8912 0.9531 31 1 3.9649 0.6777 -0.8139 32 1 5.2881 2.8942 3.9616 33 1 6.3612 5.2886 -0.5639 34 1 6.5852 3.9544 -1.7768 35 1 5.6682 6.8734 -2.3003 36 1 6.6404 5.7957 -3.3933 37 1 2.2723 8.2033 -4.3902 38 1 2.3308 7.6311 -6.0745 39 1 1.3244 6.7783 -4.8792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353259692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:00 Heat of formation + Delta-G solvation = -187.651957 kcal Electronic energy + Delta-G solvation = -25521.466912 eV Core-core repulsion = 21623.428555 eV Total energy + Delta-G solvation = -3898.038358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15654 -41.58789 -40.60009 -38.65275 -37.54062 -37.30291 -36.69802 -34.04547 -30.91866 -29.57317 -28.39402 -27.43896 -27.17853 -26.21420 -22.78599 -22.57355 -21.30573 -20.47206 -19.33291 -19.04176 -18.75137 -18.21786 -17.77872 -17.44704 -17.35005 -17.05943 -16.90007 -16.13728 -15.68499 -15.09104 -14.97911 -14.59241 -14.45888 -14.36361 -14.32338 -13.91451 -13.58700 -13.30175 -13.10794 -13.00330 -12.89840 -12.73485 -12.62198 -12.48139 -12.07927 -11.92707 -11.85652 -11.84644 -11.60260 -11.43326 -11.28898 -11.09747 -10.49675 -9.86917 -8.56790 -6.15226 1.09535 1.11466 1.30823 1.34153 1.46879 1.50940 1.72082 1.96007 2.21472 2.51737 2.93690 3.32372 3.53890 3.79567 3.87369 3.92352 4.01751 4.11061 4.23224 4.25243 4.27597 4.28367 4.29767 4.42186 4.60097 4.65474 4.69806 4.72550 4.89174 5.03401 5.16104 5.21069 5.29175 5.29672 5.43828 6.03136 6.16401 6.68955 6.70500 6.91051 7.27784 7.64214 8.57776 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.006204 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.190687 B = 4512.268554 C = 5892.286354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.446 3.554 4 O -0.530 6.530 5 C 0.113 3.887 6 N -0.450 5.450 7 C -0.354 4.354 8 H 0.066 0.934 9 C 0.040 3.960 10 N -0.878 5.878 11 Si 0.911 3.089 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.241 1.241 15 C 0.494 3.506 16 O -0.611 6.611 17 C -0.100 4.100 18 H 0.095 0.905 19 C -0.105 4.105 20 C -0.094 4.094 21 C -0.095 4.095 22 H 0.138 0.862 23 C 0.473 3.527 24 O -0.543 6.543 25 O -0.356 6.356 26 C 0.025 3.975 27 H 0.053 0.947 28 H 0.144 0.856 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.283 0.717 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.140 0.860 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 -0.227 -11.108 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.289 3.711 4 O -0.419 6.419 5 C -0.012 4.012 6 N -0.170 5.170 7 C -0.480 4.480 8 H 0.084 0.916 9 C -0.167 4.167 10 N -0.512 5.512 11 Si 0.731 3.269 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.164 1.164 15 C 0.286 3.714 16 O -0.498 6.498 17 C -0.122 4.122 18 H 0.113 0.887 19 C -0.143 4.143 20 C -0.131 4.131 21 C -0.114 4.114 22 H 0.155 0.845 23 C 0.318 3.682 24 O -0.433 6.433 25 O -0.272 6.272 26 C -0.068 4.068 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.158 0.842 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.600 -0.154 -11.129 11.245 hybrid contribution -0.678 -0.157 0.736 1.013 sum 0.922 -0.311 -10.394 10.439 Atomic orbital electron populations 1.23539 0.75118 1.05888 1.01958 1.86491 1.24973 1.32425 1.84094 1.24980 0.93365 0.81509 0.71284 1.90622 1.67517 1.37799 1.45928 1.21566 0.86324 0.87919 1.05354 1.43339 1.57884 1.09778 1.05955 1.18619 1.37677 0.96606 0.95129 0.91649 1.25955 0.97522 0.99779 0.93435 1.70006 1.37381 1.44149 0.99637 0.86353 0.80950 0.79599 0.79962 1.18592 1.19654 1.16421 1.20852 0.78343 0.90281 0.81913 1.90502 1.55415 1.64181 1.39664 1.22427 1.01046 0.92968 0.95709 0.88731 1.22691 0.91161 1.00170 1.00292 1.22857 0.93839 0.98039 0.98394 1.22704 0.93475 0.98386 0.96885 0.84463 1.24002 0.86098 0.78219 0.79930 1.90667 1.40863 1.57780 1.53955 1.86506 1.49111 1.61330 1.30294 1.23574 0.86627 0.92693 1.03873 0.92799 0.83853 0.92530 0.86567 0.85876 0.90672 0.89484 0.88694 0.88824 0.86081 0.91796 0.84198 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.36 -13.52 10.57 -51.41 -0.54 -14.07 16 3 C 0.45 20.42 7.96 71.24 0.57 20.99 16 4 O -0.53 -28.32 16.15 21.98 0.35 -27.97 16 5 C 0.11 5.04 4.08 85.63 0.35 5.39 16 6 N -0.45 -22.07 1.63 -639.60 -1.04 -23.11 16 7 C -0.35 -18.64 8.81 84.04 0.74 -17.90 16 8 H 0.07 3.87 7.12 -2.91 -0.02 3.85 16 9 C 0.04 2.03 5.03 84.93 0.43 2.46 16 10 N -0.88 -47.44 13.96 21.66 0.30 -47.14 16 11 Si 0.91 36.93 26.35 68.60 1.81 38.74 16 12 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 13 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 14 H -0.24 -9.17 5.84 99.48 0.58 -8.58 16 15 C 0.49 23.53 7.05 87.66 0.62 24.15 16 16 O -0.61 -30.41 15.59 -3.05 -0.05 -30.46 16 17 C -0.10 -4.08 2.36 -11.01 -0.03 -4.11 16 18 H 0.09 4.39 6.64 -2.39 -0.02 4.37 16 19 C -0.11 -3.28 7.51 31.12 0.23 -3.05 16 20 C -0.09 -2.31 7.64 31.18 0.24 -2.07 16 21 C -0.10 -3.16 3.58 -10.95 -0.04 -3.20 16 22 H 0.14 4.47 7.45 -2.39 -0.02 4.45 16 23 C 0.47 16.88 7.49 71.24 0.53 17.41 16 24 O -0.54 -23.63 15.65 21.97 0.34 -23.29 16 25 O -0.36 -10.31 10.57 -51.36 -0.54 -10.85 16 26 C 0.03 0.55 10.56 113.37 1.20 1.75 16 27 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 28 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 30 H 0.12 4.89 4.82 -2.38 -0.01 4.88 16 31 H 0.12 4.97 7.58 -2.39 -0.02 4.95 16 32 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 2.78 8.09 -2.38 -0.02 2.76 16 35 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 Total: -1.00 -74.32 336.36 7.62 -66.70 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.95 Total: 27.63 kcal Atomic # 6 Polarization: 37.78 SS G_CDS: 6.04 Total: 43.81 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.74 Total: -70.25 kcal Atomic # 8 Polarization: -106.20 SS G_CDS: -0.43 Total: -106.64 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 1.81 Total: 38.74 kcal Total: -74.32 7.62 -66.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.951 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds