Wall clock time and date at job start Tue Mar 31 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00300 * 2 1 4 4 O 1.20823 * 119.99661 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00237 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.98999 * 304.63148 * 5 3 2 7 7 C 1.54096 * 109.87921 * 65.71091 * 5 3 2 8 8 C 1.54986 * 104.25421 * 121.59031 * 7 5 3 9 9 C 1.55000 * 102.01158 * 20.66787 * 8 7 5 10 10 H 1.08994 * 110.61609 * 81.75564 * 9 8 7 11 11 C 1.50700 * 110.61934 * 204.59747 * 9 8 7 12 12 O 1.21283 * 119.99803 * 112.81900 * 11 9 8 13 13 N 1.34777 * 119.99675 * 293.09776 * 11 9 8 14 14 C 1.47062 * 136.06053 * 359.34957 * 13 11 9 15 15 C 1.53749 * 87.88863 * 152.96825 * 14 13 11 16 16 O 1.42908 * 114.39502 * 272.67850 * 15 14 13 17 17 C 1.50701 * 114.26906 * 139.79199 * 15 14 13 18 18 H 1.07997 * 120.00294 * 266.47467 * 17 15 14 19 19 C 1.37876 * 119.99789 * 86.47391 * 17 15 14 20 20 N 1.31515 * 120.00326 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00013 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46737 * 60.00092 * 21 19 17 23 23 H 1.48503 * 109.47088 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47210 * 300.00182 * 21 19 17 25 25 C 1.47070 * 136.05212 * 179.73146 * 13 11 9 26 26 O 1.43738 * 109.87860 * 183.54250 * 5 3 2 27 27 H 1.09000 * 109.46583 * 300.00485 * 1 2 3 28 28 H 1.08994 * 109.46789 * 60.00071 * 1 2 3 29 29 H 1.08994 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.08998 * 110.49271 * 240.13253 * 7 5 3 31 31 H 1.08999 * 110.49146 * 2.64501 * 7 5 3 32 32 H 1.09001 * 110.84507 * 262.54376 * 8 7 5 33 33 H 1.08999 * 111.05060 * 138.88408 * 8 7 5 34 34 H 1.08998 * 113.46736 * 267.69995 * 14 13 11 35 35 H 1.08998 * 113.46422 * 38.13624 * 14 13 11 36 36 H 0.96701 * 113.99627 * 273.58368 * 16 15 14 37 37 H 0.96994 * 120.00324 * 179.97438 * 20 19 17 38 38 H 1.08996 * 113.46675 * 321.85429 * 25 13 11 39 39 H 1.08990 * 113.47047 * 92.24216 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9687 0.7131 0.8437 7 6 4.1214 0.7067 -1.3199 8 6 4.9311 1.8793 -1.9294 9 6 5.1988 2.7665 -0.6870 10 1 6.0506 2.3885 -0.1218 11 6 5.4293 4.1983 -1.0970 12 8 4.6249 5.0533 -0.7923 13 7 6.5264 4.5275 -1.8072 14 6 7.6936 3.8127 -2.3452 15 6 7.7793 4.8912 -3.4375 16 8 6.9807 4.6263 -4.5926 17 6 9.1836 5.3249 -3.7710 18 1 9.6157 6.1823 -3.2766 19 6 9.9166 4.6269 -4.7071 20 7 9.3902 3.5830 -5.3095 21 14 11.6575 5.1639 -5.1200 22 1 12.4956 5.1101 -3.8952 23 1 12.2248 4.2557 -6.1489 24 1 11.6358 6.5530 -5.6443 25 6 7.0866 5.7611 -2.3794 26 8 3.9839 2.6477 0.0840 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.7746 -0.1437 -1.1248 31 1 3.3063 0.4162 -1.9828 32 1 4.3386 2.4160 -2.6703 33 1 5.8663 1.5254 -2.3634 34 1 8.5496 3.8094 -1.6703 35 1 7.4557 2.8210 -2.7299 36 1 7.4200 4.0781 -5.2572 37 1 9.9058 3.0922 -5.9684 38 1 6.3316 6.4294 -2.7934 39 1 7.7817 6.2720 -1.7133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355922734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:44 Heat of formation + Delta-G solvation = -163.357045 kcal Electronic energy + Delta-G solvation = -24876.265656 eV Core-core repulsion = 20979.280804 eV Total energy + Delta-G solvation = -3896.984851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94130 -39.89603 -38.85174 -37.09871 -36.46059 -34.07460 -32.40238 -32.23667 -30.92326 -28.73886 -27.65991 -25.66128 -25.16136 -23.99346 -22.22821 -21.01141 -20.25534 -18.59889 -17.91895 -17.47475 -17.15585 -16.88124 -16.37222 -15.91520 -15.58088 -15.20902 -15.05062 -14.56564 -14.20509 -13.98740 -13.71788 -13.40765 -13.09619 -12.85114 -12.65818 -12.43519 -12.02400 -12.01867 -11.85690 -11.61459 -11.57431 -11.18075 -11.07950 -11.02407 -10.99455 -10.58236 -10.53343 -10.30849 -9.97293 -9.59520 -9.15940 -8.81574 -8.44307 -7.90104 -6.45379 -4.55533 2.02985 2.19081 3.06242 3.13013 3.17513 3.19260 3.24675 3.99351 4.14068 4.26350 4.50920 4.57238 4.75681 4.81615 4.87766 4.93523 4.96627 5.01528 5.18418 5.27765 5.40263 5.52719 5.59413 5.73725 5.87730 6.00660 6.10969 6.13606 6.33623 6.40851 6.46922 6.61806 6.68018 7.05668 7.58108 7.61254 7.75500 8.42326 8.48570 8.71016 9.15945 9.44072 10.61246 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.032819 B = 0.003299 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.961966 B = 8486.183676 C = 8892.529623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.457 3.543 4 O -0.478 6.478 5 C 0.086 3.914 6 H 0.112 0.888 7 C -0.140 4.140 8 C -0.140 4.140 9 C 0.066 3.934 10 H 0.100 0.900 11 C 0.541 3.459 12 O -0.538 6.538 13 N -0.633 5.633 14 C 0.068 3.932 15 C 0.242 3.758 16 O -0.570 6.570 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.110 3.890 26 O -0.321 6.321 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.394 0.606 37 H 0.275 0.725 38 H 0.067 0.933 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -11.539 7.092 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.297 3.703 4 O -0.362 6.362 5 C 0.026 3.974 6 H 0.130 0.870 7 C -0.178 4.178 8 C -0.178 4.178 9 C 0.006 3.994 10 H 0.117 0.883 11 C 0.328 3.672 12 O -0.416 6.416 13 N -0.368 5.368 14 C -0.055 4.055 15 C 0.200 3.800 16 O -0.383 6.383 17 C -0.572 4.572 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.012 4.012 26 O -0.238 6.238 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.250 0.750 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.502 -10.447 7.668 15.499 hybrid contribution 1.189 -0.362 -0.477 1.332 sum -7.312 -10.809 7.191 14.900 Atomic orbital electron populations 1.23283 0.76028 1.03684 1.02777 1.86464 1.23575 1.33027 1.84595 1.23565 0.91606 0.81705 0.73408 1.90733 1.66495 1.36204 1.42785 1.22212 0.87708 0.86384 1.01054 0.87042 1.22941 1.00956 0.99297 0.94558 1.23164 1.02156 0.95106 0.97407 1.22993 0.88779 0.94919 0.92713 0.88272 1.19352 0.81051 0.89021 0.77741 1.90701 1.44785 1.50839 1.55258 1.49611 1.20253 1.14691 1.52246 1.24349 0.84862 0.99615 0.96661 1.19553 0.88816 0.88972 0.82661 1.86060 1.45410 1.75284 1.31558 1.21396 0.97218 1.14747 1.23822 0.90940 1.25069 0.99294 0.93907 0.94723 1.69242 1.38512 1.18788 1.27376 0.86359 0.82849 0.78826 0.78326 1.19864 1.20991 1.19826 1.23351 0.95478 0.88906 0.93494 1.89109 1.40812 1.23385 1.70541 0.91831 0.91771 0.87912 0.88460 0.89486 0.89378 0.88050 0.89923 0.91600 0.74979 0.91502 0.91451 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.96 10.57 -39.26 -0.41 -4.38 16 3 C 0.46 6.41 7.06 36.00 0.25 6.67 16 4 O -0.48 -8.72 16.27 -25.38 -0.41 -9.13 16 5 C 0.09 1.09 3.96 -27.31 -0.11 0.98 16 6 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.14 -1.48 6.64 -25.11 -0.17 -1.64 16 8 C -0.14 -1.94 6.48 -24.63 -0.16 -2.10 16 9 C 0.07 1.08 3.58 -26.83 -0.10 0.98 16 10 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.54 11.36 7.45 -10.98 -0.08 11.27 16 12 O -0.54 -13.54 17.34 -13.51 -0.23 -13.78 16 13 N -0.63 -13.06 3.69 -185.05 -0.68 -13.74 16 14 C 0.07 1.36 7.84 -8.37 -0.07 1.29 16 15 C 0.24 5.56 1.58 -91.12 -0.14 5.41 16 16 O -0.57 -14.16 13.55 -35.23 -0.48 -14.63 16 17 C -0.53 -12.83 8.70 -34.44 -0.30 -13.13 16 18 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.07 1.73 5.39 -17.82 -0.10 1.63 16 20 N -0.90 -21.70 11.01 55.43 0.61 -21.09 16 21 Si 0.91 18.74 29.54 -169.99 -5.02 13.72 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C 0.11 2.35 8.02 -8.50 -0.07 2.28 16 26 O -0.32 -5.62 10.02 -64.32 -0.64 -6.26 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.88 7.69 -51.93 -0.40 0.48 16 32 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 33 H 0.10 1.28 6.98 -51.93 -0.36 0.91 16 34 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 35 H 0.07 1.25 6.88 -51.93 -0.36 0.90 16 36 H 0.39 9.83 6.32 45.56 0.29 10.12 16 37 H 0.27 6.33 8.31 -40.82 -0.34 6.00 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -32.06 335.80 -6.78 -38.84 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.59 Total: 10.37 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 0.03 Total: 15.03 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.07 Total: -34.83 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -2.18 Total: -48.18 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.06 -6.78 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355922734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.519 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds