Wall clock time and date at job start Tue Mar 31 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99937 * 2 1 4 4 C 1.52997 * 109.47289 * 85.00032 * 3 2 1 5 5 C 1.50696 * 109.47242 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.00504 * 124.99503 * 5 4 3 7 7 N 1.32124 * 119.99931 * 179.97438 * 6 5 4 8 8 C 1.32150 * 120.00154 * 359.97438 * 7 6 5 9 9 C 1.38346 * 120.00396 * 0.02562 * 8 7 6 10 10 N 1.32132 * 119.99668 * 304.72193 * 5 4 3 11 11 S 1.65596 * 120.00234 * 179.97438 * 2 1 3 12 12 O 1.42102 * 104.27522 * 26.07202 * 11 2 1 13 13 O 1.42092 * 104.27862 * 153.92714 * 11 2 1 14 14 C 1.81398 * 104.44985 * 270.00061 * 11 2 1 15 15 C 1.53003 * 109.47231 * 179.97438 * 14 11 2 16 16 C 1.50705 * 109.47086 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00035 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99615 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00161 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99884 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47384 * 59.99502 * 20 18 16 22 22 H 1.48498 * 109.47474 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47271 * 299.99960 * 20 18 16 24 24 H 1.08999 * 109.47196 * 90.00199 * 1 2 3 25 25 H 1.08998 * 109.46736 * 210.00494 * 1 2 3 26 26 H 1.08999 * 109.47053 * 330.00000 * 1 2 3 27 27 H 1.09001 * 109.47060 * 205.00301 * 3 2 1 28 28 H 1.09004 * 109.47073 * 324.99790 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99854 * 4 3 2 30 30 H 1.08996 * 109.46952 * 59.99873 * 4 3 2 31 31 H 1.07998 * 120.00063 * 359.96181 * 6 5 4 32 32 H 1.08002 * 120.00211 * 180.02562 * 8 7 6 33 33 H 1.07992 * 120.00358 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.47438 * 300.00115 * 14 11 2 35 35 H 1.09003 * 109.47484 * 60.00009 * 14 11 2 36 36 H 1.08998 * 109.47050 * 300.00298 * 15 14 11 37 37 H 1.09002 * 109.46692 * 60.00394 * 15 14 11 38 38 H 0.97004 * 120.00111 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3437 1.7733 1.4370 5 6 3.0966 3.0787 1.4369 6 6 2.5434 4.1967 2.0361 7 7 3.2038 5.3411 2.0365 8 6 4.3929 5.4179 1.4650 9 6 4.9461 4.3003 0.8659 10 7 4.2874 3.1545 0.8694 11 16 2.2931 -1.4341 0.0006 12 8 1.3970 -2.3563 -0.6042 13 8 3.5395 -1.1193 -0.6047 14 6 2.5194 -1.8253 1.7574 15 6 3.2810 -3.1455 1.8920 16 6 3.4695 -3.4702 3.3515 17 1 3.0843 -2.8020 4.1075 18 6 4.1338 -4.6202 3.7216 19 7 4.6024 -5.4341 2.8009 20 14 4.3669 -5.0231 5.5306 21 1 3.0397 -5.1490 6.1848 22 1 5.1073 -6.3037 5.6612 23 1 5.1397 -3.9364 6.1842 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1858 1.1178 -0.4344 28 1 1.6502 2.0044 -0.5895 29 1 1.3554 1.9244 1.8712 30 1 2.8910 1.0378 2.0264 31 1 1.5717 4.1339 2.5034 32 1 4.9330 6.3532 1.4656 33 1 5.9176 4.3632 0.3986 34 1 3.0866 -1.0277 2.2372 35 1 1.5452 -1.9177 2.2376 36 1 2.7133 -3.9429 1.4123 37 1 4.2552 -3.0534 1.4118 38 1 5.0701 -6.2431 3.0613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356136322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:57 Heat of formation + Delta-G solvation = -58.390755 kcal Electronic energy + Delta-G solvation = -21968.217432 eV Core-core repulsion = 18550.829882 eV Total energy + Delta-G solvation = -3417.387549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99919 -38.27211 -37.87570 -36.99161 -35.90071 -35.33898 -33.83274 -33.12426 -30.43919 -27.61873 -27.34859 -25.63332 -24.94175 -23.62593 -22.53383 -19.89570 -19.13127 -18.54754 -18.15986 -17.84959 -17.53443 -17.15604 -16.71227 -16.53369 -16.05906 -15.57385 -15.12570 -14.94912 -14.72478 -14.45473 -14.28154 -13.76915 -13.59414 -13.45970 -13.23686 -13.17274 -13.09790 -12.90181 -12.80385 -12.53713 -12.39683 -12.24543 -12.21839 -12.14563 -11.87593 -11.70434 -11.17073 -10.63964 -10.30155 -10.02433 -9.80918 -8.25669 -6.39992 -0.71563 -0.14629 0.19780 1.40506 1.44060 1.52203 1.72982 2.38033 2.75916 2.85104 3.07565 3.12007 3.20800 3.42035 3.54183 3.71028 3.92856 4.02005 4.08937 4.12619 4.25190 4.44053 4.44871 4.62487 4.65887 4.69493 4.77455 4.85211 5.03180 5.06073 5.19022 5.26777 5.28586 5.47831 5.65824 5.68185 6.05946 6.37072 6.73422 6.87478 7.30187 8.86519 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.004187 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.588586 B = 6685.711194 C = 7941.688596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.997 5.997 3 C 0.123 3.877 4 C -0.095 4.095 5 C 0.075 3.925 6 C 0.054 3.946 7 N -0.460 5.460 8 C 0.044 3.956 9 C 0.048 3.952 10 N -0.470 5.470 11 S 2.606 3.394 12 O -0.994 6.994 13 O -0.995 6.995 14 C -0.586 4.586 15 C 0.021 3.979 16 C -0.539 4.539 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.261 1.261 22 H -0.285 1.285 23 H -0.264 1.264 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.197 0.803 32 H 0.200 0.800 33 H 0.193 0.807 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 22.783 -1.435 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.835 5.835 3 C -0.002 4.002 4 C -0.134 4.134 5 C -0.066 4.066 6 C -0.105 4.105 7 N -0.175 5.175 8 C -0.116 4.116 9 C -0.112 4.112 10 N -0.186 5.186 11 S 2.704 3.296 12 O -0.984 6.984 13 O -0.985 6.985 14 C -0.718 4.718 15 C -0.018 4.018 16 C -0.577 4.577 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.189 1.189 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.214 0.786 32 H 0.217 0.783 33 H 0.210 0.790 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.865 22.181 -2.288 23.332 hybrid contribution 0.564 -0.625 1.122 1.402 sum -6.302 21.556 -1.167 22.489 Atomic orbital electron populations 1.21790 0.76341 1.04941 1.03127 1.57273 1.16175 1.20029 1.90056 1.21347 0.97635 0.84710 0.96532 1.21154 1.01673 0.92128 0.98491 1.22272 0.91950 0.97403 0.94977 1.24026 1.01713 0.87912 0.96868 1.68519 1.08044 1.26601 1.14305 1.24275 0.92309 1.01257 0.93722 1.24286 1.01535 0.88468 0.96904 1.68313 1.07484 1.28006 1.14827 1.04939 0.72929 0.73277 0.78500 1.93492 1.65395 1.63954 1.75548 1.93489 1.45959 1.83451 1.75627 1.30415 1.10874 1.07684 1.22811 1.18813 0.94074 0.89941 0.98980 1.21481 1.36887 1.07399 0.91979 0.90502 1.26122 0.94915 0.96020 1.03163 1.70101 1.38340 1.13342 1.35661 0.85370 0.78923 0.77591 0.78405 1.18554 1.20994 1.18916 0.92291 0.90943 0.86979 0.90518 0.87732 0.85280 0.90335 0.78604 0.78278 0.79028 0.84389 0.83586 0.97548 0.97897 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 10.22 127.77 1.31 2.74 16 2 N -1.00 -24.61 3.12 -539.11 -1.68 -26.29 16 3 C 0.12 2.68 5.50 86.38 0.48 3.16 16 4 C -0.09 -1.69 5.95 29.85 0.18 -1.52 16 5 C 0.07 1.46 6.17 42.55 0.26 1.72 16 6 C 0.05 0.87 10.85 84.68 0.92 1.79 16 7 N -0.46 -8.23 10.50 -195.23 -2.05 -10.28 16 8 C 0.04 0.63 11.22 84.67 0.95 1.58 16 9 C 0.05 0.80 11.23 84.67 0.95 1.75 16 10 N -0.47 -10.92 10.07 -183.29 -1.84 -12.76 16 11 S 2.61 95.96 5.38 -56.49 -0.30 95.65 16 12 O -0.99 -42.16 17.09 -127.65 -2.18 -44.34 16 13 O -1.00 -43.49 16.53 -127.65 -2.11 -45.60 16 14 C -0.59 -22.19 6.12 71.98 0.44 -21.75 16 15 C 0.02 1.10 4.98 29.85 0.15 1.25 16 16 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 17 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 19 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 20 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.31 7.79 -2.39 -0.02 1.29 16 26 H 0.11 1.02 8.07 -2.39 -0.02 1.00 16 27 H 0.08 2.17 6.64 -2.39 -0.02 2.16 16 28 H 0.10 1.72 8.11 -2.38 -0.02 1.70 16 29 H 0.13 1.28 7.89 -2.39 -0.02 1.26 16 30 H 0.08 1.66 6.96 -2.39 -0.02 1.65 16 31 H 0.20 1.79 7.95 -2.91 -0.02 1.76 16 32 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.14 4.64 6.96 -2.39 -0.02 4.62 16 35 H 0.15 4.67 8.14 -2.39 -0.02 4.65 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -82.69 338.73 -0.48 -83.16 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.05 Total: 10.89 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 6.33 Total: -38.70 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -5.29 Total: -106.40 kcal Atomic # 8 Polarization: -85.64 SS G_CDS: -4.29 Total: -89.93 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 95.96 SS G_CDS: -0.30 Total: 95.65 kcal Total: -82.69 -0.48 -83.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356136322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.773 kcal (2) G-P(sol) polarization free energy of solvation -82.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds