Wall clock time and date at job start Tue Mar 31 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34224 * 116.99966 * 2 1 4 4 O 1.20827 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99914 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.49666 * 60.06270 * 5 3 2 7 7 C 1.53040 * 109.49599 * 299.99904 * 5 3 2 8 8 C 1.53046 * 109.53522 * 178.68388 * 7 5 3 9 9 C 1.53188 * 109.31030 * 61.36469 * 8 7 5 10 10 N 1.46921 * 108.77753 * 305.36263 * 9 8 7 11 11 C 1.34784 * 120.63135 * 233.58719 * 10 9 8 12 12 O 1.21689 * 119.99594 * 174.75782 * 11 10 9 13 13 C 1.46372 * 120.00046 * 354.76333 * 11 10 9 14 14 H 1.08002 * 120.00194 * 5.00175 * 13 11 10 15 15 C 1.40043 * 119.99930 * 185.00991 * 13 11 10 16 16 N 1.30670 * 120.00112 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99906 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47236 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47218 * 119.99631 * 17 15 13 20 20 H 1.48496 * 109.46956 * 239.99351 * 17 15 13 21 21 C 1.46924 * 118.73883 * 53.86333 * 10 9 8 22 22 H 1.09001 * 109.58581 * 186.34932 * 21 10 9 23 23 C 1.50702 * 109.58300 * 65.92820 * 21 10 9 24 24 O 1.20815 * 120.00257 * 339.99784 * 23 21 10 25 25 O 1.34233 * 119.99666 * 160.00395 * 23 21 10 26 26 C 1.45206 * 116.99694 * 179.97438 * 25 23 21 27 27 H 1.08996 * 109.47751 * 300.00920 * 1 2 3 28 28 H 1.09002 * 109.46598 * 60.00457 * 1 2 3 29 29 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46095 * 58.66238 * 7 5 3 31 31 H 1.08998 * 109.45117 * 298.69451 * 7 5 3 32 32 H 1.08995 * 109.49438 * 301.41264 * 8 7 5 33 33 H 1.09001 * 109.52356 * 181.33354 * 8 7 5 34 34 H 1.09004 * 109.58111 * 185.57926 * 9 8 7 35 35 H 1.08996 * 109.59186 * 65.15646 * 9 8 7 36 36 H 0.97000 * 120.00259 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47244 * 299.99388 * 26 25 23 38 38 H 1.08998 * 109.46767 * 59.99830 * 26 25 23 39 39 H 1.09004 * 109.46432 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9568 0.7816 -0.8896 7 6 4.1137 0.5815 1.2503 8 6 5.6432 0.6323 1.2354 9 6 6.1017 2.0938 1.2533 10 7 5.4635 2.8034 0.1363 11 6 6.2051 3.4965 -0.7505 12 8 5.6763 4.0001 -1.7239 13 6 7.6465 3.6433 -0.5426 14 1 8.1292 3.1299 0.2759 15 6 8.3998 4.4498 -1.4048 16 7 7.8159 5.0707 -2.3953 17 14 10.2392 4.6377 -1.1391 18 1 10.6529 3.8385 0.0420 19 1 10.9649 4.1563 -2.3420 20 1 10.5620 6.0683 -0.9059 21 6 4.0009 2.7483 0.0077 22 1 3.6978 3.2247 -0.9247 23 6 3.3642 3.4612 1.1728 24 8 3.9952 3.6452 2.1865 25 8 2.0958 3.8916 1.0844 26 6 1.5473 4.5696 2.2453 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.7849 -0.4577 1.2625 31 1 3.7421 1.0903 2.1398 32 1 6.0145 0.1455 0.3336 33 1 6.0334 0.1178 2.1135 34 1 7.1852 2.1382 1.1430 35 1 5.8090 2.5572 2.1955 36 1 8.3377 5.6290 -2.9928 37 1 1.5692 3.8971 3.1029 38 1 2.1430 5.4560 2.4634 39 1 0.5182 4.8650 2.0409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357652420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:45 Heat of formation + Delta-G solvation = -190.413454 kcal Electronic energy + Delta-G solvation = -26276.919504 eV Core-core repulsion = 22378.761399 eV Total energy + Delta-G solvation = -3898.158105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99887 -39.74700 -38.24332 -36.42533 -36.05541 -35.44877 -32.67925 -32.17808 -31.22146 -28.19992 -27.36451 -26.58178 -24.72307 -24.17031 -21.41751 -21.23280 -20.38409 -18.82813 -17.51243 -17.08509 -16.86247 -16.49064 -16.10774 -15.88838 -15.68336 -15.44201 -14.50720 -14.28761 -13.90214 -13.72507 -13.47559 -13.27104 -12.87621 -12.82310 -12.52828 -12.25324 -12.10775 -12.05928 -11.65558 -11.45709 -11.20856 -11.09207 -10.94264 -10.77091 -10.67524 -10.45237 -10.32440 -10.26338 -10.07019 -9.86708 -9.71407 -8.92372 -7.73468 -7.45328 -6.28411 -4.73131 2.33230 2.64514 2.75840 3.09233 3.14967 3.20052 3.24004 4.02950 4.35839 4.44922 4.71208 4.86725 4.91071 5.06413 5.14031 5.19642 5.32997 5.39329 5.42499 5.46338 5.49817 5.64951 5.72585 5.80593 5.91270 6.01540 6.10630 6.16989 6.22384 6.44524 6.51448 6.69866 6.98163 7.38436 7.40727 7.87064 7.94669 8.20064 8.35424 8.94217 9.24976 10.44123 10.64299 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.004983 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.544603 B = 5618.119357 C = 5896.713066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.449 3.551 4 O -0.465 6.465 5 C -0.081 4.081 6 H 0.127 0.873 7 C -0.110 4.110 8 C -0.132 4.132 9 C 0.108 3.892 10 N -0.617 5.617 11 C 0.558 3.442 12 O -0.572 6.572 13 C -0.535 4.535 14 H 0.078 0.922 15 C 0.086 3.914 16 N -0.765 5.765 17 Si 0.910 3.090 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.276 1.276 21 C 0.173 3.827 22 H 0.131 0.869 23 C 0.453 3.547 24 O -0.505 6.505 25 O -0.322 6.322 26 C 0.032 3.968 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.270 0.730 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -9.951 7.360 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.289 3.711 4 O -0.349 6.349 5 C -0.102 4.102 6 H 0.145 0.855 7 C -0.148 4.148 8 C -0.170 4.170 9 C -0.015 4.015 10 N -0.355 5.355 11 C 0.366 3.634 12 O -0.455 6.455 13 C -0.571 4.571 14 H 0.096 0.904 15 C -0.134 4.134 16 N -0.393 5.393 17 Si 0.734 3.266 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.065 3.935 22 H 0.149 0.851 23 C 0.294 3.706 24 O -0.393 6.393 25 O -0.236 6.236 26 C -0.063 4.063 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.456 -9.132 6.962 15.531 hybrid contribution 0.534 0.280 0.406 0.727 sum -9.923 -8.852 7.368 15.202 Atomic orbital electron populations 1.23200 0.76840 1.03233 1.02468 1.86498 1.22978 1.33716 1.84595 1.23811 0.91942 0.81699 0.73637 1.90838 1.66471 1.35006 1.42615 1.21505 0.87193 0.97926 1.03553 0.85483 1.21548 0.97493 1.00487 0.95275 1.21963 0.93777 0.98835 1.02468 1.21757 0.99412 0.89619 0.90759 1.48215 1.00843 1.55837 1.30653 1.18417 0.87558 0.76860 0.80590 1.90616 1.73285 1.51320 1.30234 1.20977 0.90598 1.30833 1.14727 0.90441 1.25753 1.00069 0.93812 0.93753 1.70016 1.36525 1.21250 1.11505 0.86271 0.82579 0.78664 0.79049 1.18594 1.20071 1.20126 1.20016 0.85103 0.91481 0.96935 0.85109 1.24612 0.80003 0.76553 0.89443 1.90550 1.62812 1.53957 1.31996 1.86924 1.28407 1.67352 1.40924 1.23128 0.98823 0.96576 0.87753 0.92167 0.91906 0.88460 0.90485 0.91690 0.91144 0.90932 0.88486 0.91273 0.91957 0.92945 0.92550 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.68 10.44 -39.24 -0.41 -5.09 16 3 C 0.45 6.96 6.96 36.01 0.25 7.21 16 4 O -0.47 -8.18 11.97 -27.09 -0.32 -8.51 16 5 C -0.08 -1.31 2.58 -91.42 -0.24 -1.55 16 6 H 0.13 1.94 8.14 -51.93 -0.42 1.52 16 7 C -0.11 -1.56 4.95 -26.69 -0.13 -1.69 16 8 C -0.13 -1.92 6.08 -26.61 -0.16 -2.08 16 9 C 0.11 2.05 5.81 -3.72 -0.02 2.03 16 10 N -0.62 -14.04 2.55 -167.93 -0.43 -14.47 16 11 C 0.56 15.60 7.62 -12.98 -0.10 15.50 16 12 O -0.57 -18.09 14.46 5.20 0.08 -18.02 16 13 C -0.54 -14.65 8.86 -35.63 -0.32 -14.96 16 14 H 0.08 1.93 5.69 -52.49 -0.30 1.63 16 15 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 16 N -0.76 -22.42 11.84 55.55 0.66 -21.77 16 17 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 C 0.17 3.57 2.45 -68.53 -0.17 3.40 16 22 H 0.13 3.02 6.99 -51.93 -0.36 2.66 16 23 C 0.45 9.27 5.75 36.01 0.21 9.48 16 24 O -0.51 -10.91 13.65 -18.74 -0.26 -11.17 16 25 O -0.32 -6.09 7.04 -47.60 -0.34 -6.42 16 26 C 0.03 0.47 10.56 101.05 1.07 1.53 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.06 0.98 7.07 -51.93 -0.37 0.62 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.88 5.37 -51.93 -0.28 1.60 16 35 H 0.07 1.36 6.13 -51.93 -0.32 1.04 16 36 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 37 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -35.23 321.37 -4.82 -40.05 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.98 Total: 3.35 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 1.36 Total: 22.53 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.23 Total: -36.23 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -1.25 Total: -49.21 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.23 -4.82 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357652420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.361 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds