Wall clock time and date at job start Tue Mar 31 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34224 * 116.99966 * 2 1 4 4 O 1.20827 * 120.00481 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99914 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.49666 * 60.06270 * 5 3 2 7 7 C 1.53040 * 109.49599 * 299.99904 * 5 3 2 8 8 C 1.53046 * 109.53522 * 178.68388 * 7 5 3 9 9 C 1.53188 * 109.31030 * 61.36469 * 8 7 5 10 10 N 1.46921 * 108.77753 * 305.36263 * 9 8 7 11 11 C 1.34784 * 120.63135 * 233.58719 * 10 9 8 12 12 O 1.21689 * 119.99594 * 174.75782 * 11 10 9 13 13 C 1.46372 * 120.00046 * 354.76333 * 11 10 9 14 14 H 1.08002 * 120.00194 * 5.00175 * 13 11 10 15 15 C 1.40043 * 119.99930 * 185.00991 * 13 11 10 16 16 N 1.30670 * 120.00112 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99906 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47236 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47218 * 119.99631 * 17 15 13 20 20 H 1.48496 * 109.46956 * 239.99351 * 17 15 13 21 21 C 1.46924 * 118.73883 * 53.86333 * 10 9 8 22 22 H 1.09001 * 109.58581 * 186.34932 * 21 10 9 23 23 C 1.50702 * 109.58300 * 65.92820 * 21 10 9 24 24 O 1.20815 * 120.00257 * 339.99784 * 23 21 10 25 25 O 1.34233 * 119.99666 * 160.00395 * 23 21 10 26 26 C 1.45206 * 116.99694 * 179.97438 * 25 23 21 27 27 H 1.08996 * 109.47751 * 300.00920 * 1 2 3 28 28 H 1.09002 * 109.46598 * 60.00457 * 1 2 3 29 29 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46095 * 58.66238 * 7 5 3 31 31 H 1.08998 * 109.45117 * 298.69451 * 7 5 3 32 32 H 1.08995 * 109.49438 * 301.41264 * 8 7 5 33 33 H 1.09001 * 109.52356 * 181.33354 * 8 7 5 34 34 H 1.09004 * 109.58111 * 185.57926 * 9 8 7 35 35 H 1.08996 * 109.59186 * 65.15646 * 9 8 7 36 36 H 0.97000 * 120.00259 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.47244 * 299.99388 * 26 25 23 38 38 H 1.08998 * 109.46767 * 59.99830 * 26 25 23 39 39 H 1.09004 * 109.46432 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9568 0.7816 -0.8896 7 6 4.1137 0.5815 1.2503 8 6 5.6432 0.6323 1.2354 9 6 6.1017 2.0938 1.2533 10 7 5.4635 2.8034 0.1363 11 6 6.2051 3.4965 -0.7505 12 8 5.6763 4.0001 -1.7239 13 6 7.6465 3.6433 -0.5426 14 1 8.1292 3.1299 0.2759 15 6 8.3998 4.4498 -1.4048 16 7 7.8159 5.0707 -2.3953 17 14 10.2392 4.6377 -1.1391 18 1 10.6529 3.8385 0.0420 19 1 10.9649 4.1563 -2.3420 20 1 10.5620 6.0683 -0.9059 21 6 4.0009 2.7483 0.0077 22 1 3.6978 3.2247 -0.9247 23 6 3.3642 3.4612 1.1728 24 8 3.9952 3.6452 2.1865 25 8 2.0958 3.8916 1.0844 26 6 1.5473 4.5696 2.2453 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.7849 -0.4577 1.2625 31 1 3.7421 1.0903 2.1398 32 1 6.0145 0.1455 0.3336 33 1 6.0334 0.1178 2.1135 34 1 7.1852 2.1382 1.1430 35 1 5.8090 2.5572 2.1955 36 1 8.3377 5.6290 -2.9928 37 1 1.5692 3.8971 3.1029 38 1 2.1430 5.4560 2.4634 39 1 0.5182 4.8650 2.0409 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357652420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:45 Heat of formation + Delta-G solvation = -214.171517 kcal Electronic energy + Delta-G solvation = -26277.949731 eV Core-core repulsion = 22378.761399 eV Total energy + Delta-G solvation = -3899.188332 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41579 -41.08858 -39.93157 -37.92399 -37.56075 -36.97129 -34.73244 -33.82429 -32.70538 -29.44152 -28.65284 -28.24768 -26.32821 -25.51278 -22.95463 -22.60412 -21.88200 -20.46721 -18.99418 -18.52137 -18.30330 -17.94599 -17.80110 -17.46285 -17.07260 -16.84166 -16.23767 -15.84795 -15.39151 -15.09158 -14.78955 -14.56131 -14.38520 -14.22556 -14.06320 -13.84795 -13.55412 -13.15999 -13.06427 -13.01783 -12.80888 -12.75771 -12.57981 -12.05555 -11.99579 -11.89773 -11.85404 -11.70584 -11.57897 -11.32014 -11.19032 -10.95554 -9.88360 -9.27757 -8.32920 -6.87767 1.05034 1.14272 1.40417 1.41024 1.55363 1.61229 1.69770 2.24877 2.43669 2.71544 3.29323 3.52888 3.63255 3.74416 3.85199 4.09244 4.22912 4.24620 4.25653 4.30903 4.36951 4.38430 4.46537 4.59787 4.68885 4.75181 4.80827 4.93816 5.02732 5.05082 5.29232 5.34231 5.39347 5.50656 5.65872 6.02243 6.20210 6.71162 6.76978 6.84944 7.27888 8.36020 8.62397 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.004983 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.544603 B = 5618.119357 C = 5896.713066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.455 3.545 4 O -0.492 6.492 5 C -0.078 4.078 6 H 0.134 0.866 7 C -0.102 4.102 8 C -0.122 4.122 9 C 0.103 3.897 10 N -0.619 5.619 11 C 0.542 3.458 12 O -0.626 6.626 13 C -0.559 4.559 14 H 0.099 0.901 15 C 0.029 3.971 16 N -0.820 5.820 17 Si 0.998 3.002 18 H -0.243 1.243 19 H -0.266 1.266 20 H -0.273 1.273 21 C 0.168 3.832 22 H 0.094 0.906 23 C 0.455 3.545 24 O -0.522 6.522 25 O -0.331 6.331 26 C 0.025 3.975 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.275 0.725 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -12.213 9.096 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.297 3.703 4 O -0.378 6.378 5 C -0.098 4.098 6 H 0.152 0.848 7 C -0.139 4.139 8 C -0.160 4.160 9 C -0.019 4.019 10 N -0.356 5.356 11 C 0.350 3.650 12 O -0.512 6.512 13 C -0.595 4.595 14 H 0.117 0.883 15 C -0.186 4.186 16 N -0.449 5.449 17 Si 0.817 3.183 18 H -0.165 1.165 19 H -0.191 1.191 20 H -0.198 1.198 21 C 0.060 3.940 22 H 0.112 0.888 23 C 0.297 3.703 24 O -0.412 6.412 25 O -0.245 6.245 26 C -0.069 4.069 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.211 -11.453 8.751 17.664 hybrid contribution 0.256 0.985 -0.098 1.022 sum -9.954 -10.469 8.653 16.839 Atomic orbital electron populations 1.23558 0.74625 1.05723 1.02482 1.86469 1.24984 1.31789 1.83904 1.23545 0.91540 0.82140 0.73085 1.90828 1.66906 1.36077 1.44026 1.21415 0.88351 0.94741 1.05285 0.84813 1.21562 0.96922 1.02063 0.93387 1.21919 0.94169 0.95508 1.04438 1.21933 0.98887 0.92250 0.88818 1.47965 1.01824 1.55227 1.30559 1.18797 0.88569 0.76906 0.80766 1.90564 1.74430 1.53600 1.32640 1.21509 0.90937 1.31386 1.15642 0.88346 1.27014 1.06111 0.92701 0.92812 1.70186 1.39277 1.22427 1.13014 0.84967 0.74730 0.78843 0.79794 1.16544 1.19111 1.19780 1.20047 0.84010 0.94510 0.95459 0.88785 1.24449 0.80532 0.76299 0.89018 1.90529 1.63328 1.54737 1.32571 1.86904 1.27449 1.67321 1.42801 1.23466 1.00164 0.96267 0.86959 0.91955 0.92197 0.84717 0.86803 0.92520 0.90685 0.87263 0.89185 0.92018 0.91476 0.91756 0.93058 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.35 -8.36 10.44 -51.36 -0.54 -8.90 16 3 C 0.46 13.70 6.96 71.24 0.50 14.20 16 4 O -0.49 -17.26 11.97 29.93 0.36 -16.90 16 5 C -0.08 -2.47 2.58 -11.31 -0.03 -2.50 16 6 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 7 C -0.10 -2.62 4.95 30.62 0.15 -2.47 16 8 C -0.12 -3.25 6.08 30.67 0.19 -3.06 16 9 C 0.10 3.87 5.81 86.36 0.50 4.37 16 10 N -0.62 -28.98 2.55 -803.44 -2.05 -31.03 16 11 C 0.54 31.63 7.62 86.36 0.66 32.28 16 12 O -0.63 -42.01 14.46 -4.31 -0.06 -42.07 16 13 C -0.56 -31.23 8.86 24.83 0.22 -31.01 16 14 H 0.10 4.89 5.69 -2.91 -0.02 4.87 16 15 C 0.03 1.60 5.50 85.30 0.47 2.07 16 16 N -0.82 -49.90 11.84 21.83 0.26 -49.64 16 17 Si 1.00 40.40 29.56 68.60 2.03 42.43 16 18 H -0.24 -8.96 7.11 99.48 0.71 -8.26 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 C 0.17 7.16 2.45 44.37 0.11 7.27 16 22 H 0.09 4.69 6.99 -2.39 -0.02 4.67 16 23 C 0.45 19.02 5.75 71.24 0.41 19.43 16 24 O -0.52 -22.79 13.65 22.00 0.30 -22.49 16 25 O -0.33 -12.64 7.04 -43.48 -0.31 -12.94 16 26 C 0.03 0.72 10.56 113.37 1.20 1.91 16 27 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 2.16 8.09 -2.39 -0.02 2.15 16 31 H 0.06 1.59 7.07 -2.39 -0.02 1.57 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 3.44 5.37 -2.39 -0.01 3.43 16 35 H 0.06 2.40 6.13 -2.39 -0.01 2.39 16 36 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 37 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 39 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -81.30 321.37 6.64 -74.66 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.08 Total: 22.71 kcal Atomic # 6 Polarization: 38.61 SS G_CDS: 5.57 Total: 44.18 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.79 Total: -80.67 kcal Atomic # 8 Polarization: -103.06 SS G_CDS: -0.25 Total: -103.30 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -81.30 6.64 -74.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357652420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.513 kcal (2) G-P(sol) polarization free energy of solvation -81.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds