Wall clock time and date at job start Tue Mar 31 2020 03:21:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42891 * 1
3 3 C 1.42905 * 114.00444 * 2 1
4 4 C 1.52995 * 109.47286 * 180.02562 * 3 2 1
5 5 H 1.08997 * 109.46936 * 304.99570 * 4 3 2
6 6 C 1.52992 * 109.47326 * 65.00396 * 4 3 2
7 7 N 1.46505 * 109.46831 * 185.00461 * 4 3 2
8 8 C 1.36335 * 125.86079 * 324.99736 * 7 4 3
9 9 C 1.35131 * 108.89781 * 179.72761 * 8 7 4
10 10 C 1.40984 * 108.23702 * 0.44162 * 9 8 7
11 11 N 1.33303 * 126.35452 * 179.83199 * 10 9 8
12 12 C 1.32906 * 120.00245 * 359.68030 * 11 10 9
13 13 O 1.21593 * 119.99958 * 0.02562 * 12 11 10
14 14 C 1.50700 * 119.99982 * 179.72932 * 12 11 10
15 15 S 1.80997 * 109.47151 * 180.27650 * 14 12 11
16 16 C 1.76202 * 100.00062 * 180.02562 * 15 14 12
17 17 H 1.07997 * 119.99658 * 359.97438 * 16 15 14
18 18 C 1.38802 * 119.99986 * 180.02562 * 16 15 14
19 19 N 1.31632 * 119.99638 * 359.97438 * 18 16 15
20 20 Si 1.86789 * 120.00000 * 179.97438 * 18 16 15
21 21 H 1.48507 * 109.46873 * 60.00277 * 20 18 16
22 22 H 1.48505 * 109.47271 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.47673 * 300.00264 * 20 18 16
24 24 N 1.37279 * 107.28654 * 359.56315 * 10 9 8
25 25 H 0.96996 * 126.35210 * 180.27222 * 24 10 9
26 26 H 1.08998 * 109.47448 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.47291 * 299.99746 * 1 2 3
28 28 H 1.09001 * 109.47628 * 59.99149 * 1 2 3
29 29 H 1.09003 * 109.46512 * 59.99687 * 3 2 1
30 30 H 1.09005 * 109.46608 * 300.00671 * 3 2 1
31 31 H 1.09001 * 109.47207 * 59.99284 * 6 4 3
32 32 H 1.09002 * 109.47047 * 179.97438 * 6 4 3
33 33 H 1.08999 * 109.46917 * 299.99662 * 6 4 3
34 34 H 1.08006 * 125.55263 * 359.97438 * 8 7 4
35 35 H 1.07998 * 125.88037 * 180.26551 * 9 8 7
36 36 H 1.09000 * 109.47028 * 300.27953 * 14 12 11
37 37 H 1.08998 * 109.47115 * 60.27464 * 14 12 11
38 38 H 0.97003 * 119.99873 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1846 -0.0006
5 1 3.8514 0.5682 0.8410
6 6 3.9952 0.5369 -1.3083
7 7 4.1309 2.5177 0.1199
8 6 3.6328 3.6667 -0.4191
9 6 4.4486 4.6931 -0.0920
10 6 5.5142 4.1821 0.6767
11 7 6.5281 4.8820 1.1856
12 6 6.6011 6.1927 0.9783
13 8 5.7428 6.7536 0.3247
14 6 7.7441 6.9850 1.5588
15 16 7.5583 8.7288 1.1111
16 6 8.9863 9.3999 1.8956
17 1 9.6548 8.7534 2.4446
18 6 9.2513 10.7596 1.8087
19 7 8.4362 11.5476 1.1399
20 14 10.7647 11.4712 2.6409
21 1 11.9832 10.8318 2.0826
22 1 10.8199 12.9355 2.3996
23 1 10.6946 11.2120 4.1014
24 7 5.3106 2.8309 0.8088
25 1 5.8779 2.2083 1.2899
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5140 -0.8899
29 1 1.6886 1.8463 0.8900
30 1 1.6885 1.8464 -0.8900
31 1 3.6791 1.1534 -2.1498
32 1 5.0818 0.4512 -1.3089
33 1 3.5521 -0.4549 -1.3978
34 1 2.7308 3.7445 -1.0080
35 1 4.3097 5.7265 -0.3736
36 1 7.7404 6.8861 2.6443
37 1 8.6865 6.6066 1.1629
38 1 8.6212 12.4979 1.0794
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000426375364.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:56
Heat of formation + Delta-G solvation = 36.767082 kcal
Electronic energy + Delta-G solvation = -20883.622366 eV
Core-core repulsion = 17470.361170 eV
Total energy + Delta-G solvation = -3413.261196 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 299.109 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.66859 -38.99242 -38.37787 -35.46307 -32.83604 -32.24814 -31.75210 -29.75768
-28.21070 -28.08442 -26.17144 -25.30377 -23.16698 -22.16442 -21.51370 -19.33977
-18.06020 -17.29167 -16.84281 -16.67429 -16.26102 -15.94197 -15.43253 -15.18664
-14.64602 -14.55389 -14.45594 -14.03593 -13.76346 -13.37965 -13.25924 -13.12460
-12.75457 -12.37359 -12.29684 -12.21711 -11.72265 -11.59862 -10.90484 -10.86943
-10.60751 -10.58013 -10.46061 -9.67818 -9.62191 -9.46578 -8.88548 -8.52492
-7.96915 -7.51409 -6.26813 -6.03987 -3.71439 0.97509 1.01907 2.54873
2.97464 3.29048 3.35734 3.36361 3.39980 3.71670 3.93712 4.08131
4.25706 4.26012 4.35770 4.39688 4.58949 4.67115 4.75836 4.80067
4.89327 5.03444 5.05529 5.10323 5.30423 5.33315 5.42430 5.52253
5.72667 6.06621 6.27810 6.30585 6.38623 6.62617 6.71374 7.00974
7.39932 7.77645 8.01510 8.54096 9.24755 9.41072 11.03572
Molecular weight = 299.11amu
Principal moments of inertia in cm(-1)
A = 0.055196 B = 0.002277 C = 0.002236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 507.158136 B =12291.262649 C =12521.340018
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.385 6.385
3 C 0.054 3.946
4 C 0.166 3.834
5 H 0.107 0.893
6 C -0.166 4.166
7 N -0.391 5.391
8 C 0.133 3.867
9 C -0.287 4.287
10 C 0.480 3.520
11 N -0.671 5.671
12 C 0.517 3.483
13 O -0.541 6.541
14 C -0.122 4.122
15 S -0.078 6.078
16 C -0.528 4.528
17 H 0.071 0.929
18 C 0.071 3.929
19 N -0.870 5.870
20 Si 0.917 3.083
21 H -0.275 1.275
22 H -0.284 1.284
23 H -0.275 1.275
24 N -0.480 5.480
25 H 0.447 0.553
26 H 0.092 0.908
27 H 0.046 0.954
28 H 0.047 0.953
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.067 0.933
32 H 0.066 0.934
33 H 0.087 0.913
34 H 0.189 0.811
35 H 0.195 0.805
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.996 -28.018 -4.148 33.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.303 6.303
3 C -0.024 4.024
4 C 0.065 3.935
5 H 0.125 0.875
6 C -0.224 4.224
7 N -0.185 5.185
8 C -0.002 4.002
9 C -0.319 4.319
10 C 0.224 3.776
11 N -0.429 5.429
12 C 0.304 3.696
13 O -0.419 6.419
14 C -0.272 4.272
15 S 0.149 5.851
16 C -0.676 4.676
17 H 0.089 0.911
18 C -0.137 4.137
19 N -0.506 5.506
20 Si 0.744 3.256
21 H -0.200 1.200
22 H -0.210 1.210
23 H -0.200 1.200
24 N -0.208 5.208
25 H 0.294 0.706
26 H 0.110 0.890
27 H 0.064 0.936
28 H 0.065 0.935
29 H 0.083 0.917
30 H 0.083 0.917
31 H 0.086 0.914
32 H 0.085 0.915
33 H 0.105 0.895
34 H 0.206 0.794
35 H 0.211 0.789
36 H 0.105 0.895
37 H 0.105 0.895
38 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -17.563 -27.699 -4.664 33.128
hybrid contribution 1.592 -0.015 1.213 2.001
sum -15.971 -27.715 -3.451 32.172
Atomic orbital electron populations
1.22830 0.79569 1.03411 1.00609 1.87806 1.20756 1.26158 1.95584
1.22693 0.91416 0.86121 1.02212 1.21071 0.91942 0.79213 1.01315
0.87544 1.22302 1.02475 1.01955 0.95718 1.46400 1.16029 1.07542
1.48494 1.22739 0.98529 0.83866 0.95049 1.22923 0.97495 1.02393
1.09055 1.19370 0.90033 0.81876 0.86279 1.68969 1.25889 1.10299
1.37736 1.20618 0.85990 0.84467 0.78503 1.90524 1.39644 1.74084
1.37640 1.23152 0.98922 1.01678 1.03482 1.85169 1.35145 0.94150
1.70604 1.22855 1.10759 0.95773 1.38232 0.91071 1.24981 0.97366
0.95955 0.95445 1.70032 1.36276 1.04932 1.39385 0.86248 0.81996
0.77689 0.79681 1.20022 1.20954 1.20020 1.44199 1.17349 1.07908
1.51334 0.70558 0.88981 0.93556 0.93485 0.91676 0.91668 0.91401
0.91539 0.89474 0.79410 0.78876 0.89536 0.89538 0.92401
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.09 11.01 101.05 1.11 1.20 16
2 O -0.38 -1.86 10.24 -35.23 -0.36 -2.22 16
3 C 0.05 0.21 4.85 37.15 0.18 0.39 16
4 C 0.17 0.76 3.63 -67.93 -0.25 0.51 16
5 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16
6 C -0.17 -0.69 9.41 37.15 0.35 -0.34 16
7 N -0.39 -2.92 3.56 -54.56 -0.19 -3.11 16
8 C 0.13 1.12 10.58 -16.66 -0.18 0.95 16
9 C -0.29 -4.02 9.51 -39.65 -0.38 -4.39 16
10 C 0.48 7.43 8.07 -155.19 -1.25 6.18 16
11 N -0.67 -13.16 10.51 -11.59 -0.12 -13.28 16
12 C 0.52 12.01 7.73 -11.81 -0.09 11.92 16
13 O -0.54 -13.36 12.77 5.28 0.07 -13.29 16
14 C -0.12 -3.00 6.23 36.01 0.22 -2.78 16
15 S -0.08 -2.31 20.57 -107.50 -2.21 -4.52 16
16 C -0.53 -16.24 9.50 30.94 0.29 -15.95 16
17 H 0.07 2.09 7.80 -52.49 -0.41 1.69 16
18 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16
19 N -0.87 -27.55 13.22 55.49 0.73 -26.81 16
20 Si 0.92 22.67 29.55 -169.99 -5.02 17.64 16
21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
24 N -0.48 -4.87 7.37 31.32 0.23 -4.64 16
25 H 0.45 3.44 8.96 -182.56 -1.64 1.80 16
26 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16
27 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16
28 H 0.05 0.09 8.14 -51.93 -0.42 -0.33 16
29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.07 0.17 7.40 -51.93 -0.38 -0.22 16
31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16
32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
33 H 0.09 0.32 7.82 -51.93 -0.41 -0.09 16
34 H 0.19 0.77 7.37 -52.48 -0.39 0.38 16
35 H 0.19 3.27 5.77 -52.49 -0.30 2.97 16
36 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16
37 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16
38 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16
LS Contribution 341.85 15.07 5.15 5.15
Total: -1.00 -39.99 341.85 -8.27 -48.26
By element:
Atomic # 1 Polarization: 3.56 SS G_CDS: -6.47 Total: -2.91 kcal
Atomic # 6 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal
Atomic # 7 Polarization: -48.50 SS G_CDS: 0.65 Total: -47.85 kcal
Atomic # 8 Polarization: -15.22 SS G_CDS: -0.29 Total: -15.52 kcal
Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal
Atomic # 16 Polarization: -2.31 SS G_CDS: -2.21 Total: -4.52 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -39.99 -8.27 -48.26 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426375364.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.025 kcal
(2) G-P(sol) polarization free energy of solvation -39.985 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.040 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.258 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds