Wall clock time and date at job start Tue Mar 31 2020 03:21:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42891 * 1
3 3 C 1.42905 * 114.00444 * 2 1
4 4 C 1.52995 * 109.47286 * 180.02562 * 3 2 1
5 5 H 1.08997 * 109.46936 * 304.99570 * 4 3 2
6 6 C 1.52992 * 109.47326 * 65.00396 * 4 3 2
7 7 N 1.46505 * 109.46831 * 185.00461 * 4 3 2
8 8 C 1.36335 * 125.86079 * 324.99736 * 7 4 3
9 9 C 1.35131 * 108.89781 * 179.72761 * 8 7 4
10 10 C 1.40984 * 108.23702 * 0.44162 * 9 8 7
11 11 N 1.33303 * 126.35452 * 179.83199 * 10 9 8
12 12 C 1.32906 * 120.00245 * 359.68030 * 11 10 9
13 13 O 1.21593 * 119.99958 * 0.02562 * 12 11 10
14 14 C 1.50700 * 119.99982 * 179.72932 * 12 11 10
15 15 S 1.80997 * 109.47151 * 180.27650 * 14 12 11
16 16 C 1.76202 * 100.00062 * 180.02562 * 15 14 12
17 17 H 1.07997 * 119.99658 * 359.97438 * 16 15 14
18 18 C 1.38802 * 119.99986 * 180.02562 * 16 15 14
19 19 N 1.31632 * 119.99638 * 359.97438 * 18 16 15
20 20 Si 1.86789 * 120.00000 * 179.97438 * 18 16 15
21 21 H 1.48507 * 109.46873 * 60.00277 * 20 18 16
22 22 H 1.48505 * 109.47271 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.47673 * 300.00264 * 20 18 16
24 24 N 1.37279 * 107.28654 * 359.56315 * 10 9 8
25 25 H 0.96996 * 126.35210 * 180.27222 * 24 10 9
26 26 H 1.08998 * 109.47448 * 180.02562 * 1 2 3
27 27 H 1.09003 * 109.47291 * 299.99746 * 1 2 3
28 28 H 1.09001 * 109.47628 * 59.99149 * 1 2 3
29 29 H 1.09003 * 109.46512 * 59.99687 * 3 2 1
30 30 H 1.09005 * 109.46608 * 300.00671 * 3 2 1
31 31 H 1.09001 * 109.47207 * 59.99284 * 6 4 3
32 32 H 1.09002 * 109.47047 * 179.97438 * 6 4 3
33 33 H 1.08999 * 109.46917 * 299.99662 * 6 4 3
34 34 H 1.08006 * 125.55263 * 359.97438 * 8 7 4
35 35 H 1.07998 * 125.88037 * 180.26551 * 9 8 7
36 36 H 1.09000 * 109.47028 * 300.27953 * 14 12 11
37 37 H 1.08998 * 109.47115 * 60.27464 * 14 12 11
38 38 H 0.97003 * 119.99873 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1846 -0.0006
5 1 3.8514 0.5682 0.8410
6 6 3.9952 0.5369 -1.3083
7 7 4.1309 2.5177 0.1199
8 6 3.6328 3.6667 -0.4191
9 6 4.4486 4.6931 -0.0920
10 6 5.5142 4.1821 0.6767
11 7 6.5281 4.8820 1.1856
12 6 6.6011 6.1927 0.9783
13 8 5.7428 6.7536 0.3247
14 6 7.7441 6.9850 1.5588
15 16 7.5583 8.7288 1.1111
16 6 8.9863 9.3999 1.8956
17 1 9.6548 8.7534 2.4446
18 6 9.2513 10.7596 1.8087
19 7 8.4362 11.5476 1.1399
20 14 10.7647 11.4712 2.6409
21 1 11.9832 10.8318 2.0826
22 1 10.8199 12.9355 2.3996
23 1 10.6946 11.2120 4.1014
24 7 5.3106 2.8309 0.8088
25 1 5.8779 2.2083 1.2899
26 1 -0.3634 -1.0276 0.0005
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5140 -0.8899
29 1 1.6886 1.8463 0.8900
30 1 1.6885 1.8464 -0.8900
31 1 3.6791 1.1534 -2.1498
32 1 5.0818 0.4512 -1.3089
33 1 3.5521 -0.4549 -1.3978
34 1 2.7308 3.7445 -1.0080
35 1 4.3097 5.7265 -0.3736
36 1 7.7404 6.8861 2.6443
37 1 8.6865 6.6066 1.1629
38 1 8.6212 12.4979 1.0794
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000426375364.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:56
Heat of formation + Delta-G solvation = 5.374525 kcal
Electronic energy + Delta-G solvation = -20884.983649 eV
Core-core repulsion = 17470.361170 eV
Total energy + Delta-G solvation = -3414.622479 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 299.109 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-42.65261 -40.12592 -39.09535 -36.19687 -34.56858 -33.97142 -32.74140 -31.25813
-29.35791 -28.41375 -27.64333 -26.48865 -23.98133 -23.30984 -22.34686 -20.66391
-19.47138 -18.75658 -17.67013 -17.23322 -16.98611 -16.86322 -16.80290 -16.42918
-16.04136 -15.76893 -15.71417 -15.59925 -14.63801 -14.52535 -14.42453 -14.26991
-13.81658 -13.40033 -13.18749 -13.12500 -12.85255 -12.63589 -12.58408 -12.48022
-12.04805 -11.70040 -11.58810 -11.10932 -10.96413 -10.73777 -10.68776 -10.28581
-10.01410 -8.73752 -8.58445 -8.31770 -6.09720 -0.04788 0.13646 1.31641
1.35918 1.45029 1.49649 1.66180 2.30663 2.37832 2.72369 2.73212
3.00731 3.26133 3.48631 3.62662 3.69683 3.75426 3.92893 4.22874
4.28649 4.40375 4.44621 4.50339 4.57204 4.61530 4.64516 4.76076
4.81923 4.92696 4.93565 5.14990 5.21727 5.42798 5.68345 5.96226
6.05003 6.22329 6.30597 6.62181 7.07811 7.73844 8.77724
Molecular weight = 299.11amu
Principal moments of inertia in cm(-1)
A = 0.055196 B = 0.002277 C = 0.002236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 507.158136 B =12291.262649 C =12521.340018
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.400 6.400
3 C 0.053 3.947
4 C 0.160 3.840
5 H 0.120 0.880
6 C -0.163 4.163
7 N -0.360 5.360
8 C 0.190 3.810
9 C -0.342 4.342
10 C 0.460 3.540
11 N -0.700 5.700
12 C 0.509 3.491
13 O -0.580 6.580
14 C -0.098 4.098
15 S -0.151 6.151
16 C -0.550 4.550
17 H 0.075 0.925
18 C 0.013 3.987
19 N -0.910 5.910
20 Si 1.002 2.998
21 H -0.263 1.263
22 H -0.273 1.273
23 H -0.263 1.263
24 N -0.458 5.458
25 H 0.460 0.540
26 H 0.098 0.902
27 H 0.048 0.952
28 H 0.057 0.943
29 H 0.066 0.934
30 H 0.087 0.913
31 H 0.073 0.927
32 H 0.059 0.941
33 H 0.098 0.902
34 H 0.245 0.755
35 H 0.160 0.840
36 H 0.089 0.911
37 H 0.089 0.911
38 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.070 -30.973 -4.240 36.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.319 6.319
3 C -0.025 4.025
4 C 0.061 3.939
5 H 0.138 0.862
6 C -0.221 4.221
7 N -0.150 5.150
8 C 0.050 3.950
9 C -0.373 4.373
10 C 0.208 3.792
11 N -0.463 5.463
12 C 0.295 3.705
13 O -0.461 6.461
14 C -0.249 4.249
15 S 0.076 5.924
16 C -0.698 4.698
17 H 0.094 0.906
18 C -0.192 4.192
19 N -0.546 5.546
20 Si 0.823 3.177
21 H -0.188 1.188
22 H -0.197 1.197
23 H -0.187 1.187
24 N -0.184 5.184
25 H 0.311 0.689
26 H 0.117 0.883
27 H 0.067 0.933
28 H 0.076 0.924
29 H 0.084 0.916
30 H 0.105 0.895
31 H 0.092 0.908
32 H 0.078 0.922
33 H 0.116 0.884
34 H 0.261 0.739
35 H 0.177 0.823
36 H 0.107 0.893
37 H 0.107 0.893
38 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -18.671 -30.827 -4.744 36.351
hybrid contribution 1.613 0.453 1.133 2.022
sum -17.059 -30.374 -3.611 35.023
Atomic orbital electron populations
1.22974 0.78504 1.04182 1.01269 1.87777 1.21888 1.26475 1.95741
1.22729 0.90114 0.86293 1.03393 1.21497 0.92831 0.77073 1.02490
0.86215 1.22284 1.02146 1.02551 0.95106 1.47077 1.13944 1.08876
1.45097 1.23423 0.97901 0.82010 0.91704 1.22487 0.99645 1.02634
1.12568 1.19393 0.89865 0.83401 0.86581 1.68711 1.28468 1.08503
1.40610 1.20344 0.85310 0.85966 0.78890 1.90514 1.40721 1.74877
1.40037 1.22968 1.00364 0.97958 1.03648 1.85231 1.36274 0.99253
1.71611 1.23172 1.10956 0.96714 1.38943 0.90646 1.26174 1.01193
0.96025 0.95811 1.70189 1.38465 1.05477 1.40498 0.84963 0.76987
0.77062 0.78672 1.18770 1.19725 1.18748 1.44236 1.17845 1.06505
1.49785 0.68917 0.88313 0.93304 0.92412 0.91563 0.89531 0.90823
0.92175 0.88360 0.73889 0.82252 0.89296 0.89309 0.91904
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.06 11.01 113.37 1.25 1.31 16
2 O -0.40 -2.28 10.24 -148.98 -1.53 -3.81 16
3 C 0.05 0.15 4.85 71.98 0.35 0.50 16
4 C 0.16 0.73 3.63 44.99 0.16 0.90 16
5 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16
6 C -0.16 -0.65 9.41 71.98 0.68 0.03 16
7 N -0.36 -4.01 3.56 -326.52 -1.16 -5.17 16
8 C 0.19 2.54 10.58 83.28 0.88 3.42 16
9 C -0.34 -9.55 9.51 22.23 0.21 -9.34 16
10 C 0.46 14.31 8.07 133.83 1.08 15.39 16
11 N -0.70 -28.69 10.51 -309.88 -3.26 -31.94 16
12 C 0.51 25.20 7.73 87.95 0.68 25.88 16
13 O -0.58 -30.90 12.77 -4.01 -0.05 -30.95 16
14 C -0.10 -5.14 6.23 71.24 0.44 -4.70 16
15 S -0.15 -9.50 20.57 -56.49 -1.16 -10.66 16
16 C -0.55 -34.98 9.50 67.95 0.65 -34.33 16
17 H 0.08 4.56 7.80 -2.91 -0.02 4.53 16
18 C 0.01 0.77 5.49 84.86 0.47 1.24 16
19 N -0.91 -59.13 13.22 21.65 0.29 -58.85 16
20 Si 1.00 46.91 29.55 68.60 2.03 48.94 16
21 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16
22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
23 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16
24 N -0.46 -8.35 7.37 -54.81 -0.40 -8.75 16
25 H 0.46 6.03 8.96 -213.29 -1.91 4.12 16
26 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16
27 H 0.05 0.08 8.14 -2.39 -0.02 0.07 16
28 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16
29 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16
30 H 0.09 -0.08 7.40 -2.38 -0.02 -0.09 16
31 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16
32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16
33 H 0.10 0.29 7.82 -2.39 -0.02 0.27 16
34 H 0.25 0.53 7.37 -2.91 -0.02 0.51 16
35 H 0.16 5.78 5.77 -2.91 -0.02 5.77 16
36 H 0.09 4.48 8.14 -2.40 -0.02 4.46 16
37 H 0.09 4.47 8.14 -2.40 -0.02 4.45 16
38 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16
Total: -1.00 -94.35 341.85 0.76 -93.59
By element:
Atomic # 1 Polarization: 8.16 SS G_CDS: -0.83 Total: 7.32 kcal
Atomic # 6 Polarization: -6.55 SS G_CDS: 6.85 Total: 0.29 kcal
Atomic # 7 Polarization: -100.17 SS G_CDS: -4.54 Total: -104.71 kcal
Atomic # 8 Polarization: -33.19 SS G_CDS: -1.58 Total: -34.76 kcal
Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal
Atomic # 16 Polarization: -9.50 SS G_CDS: -1.16 Total: -10.66 kcal
Total: -94.35 0.76 -93.59 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000426375364.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.961 kcal
(2) G-P(sol) polarization free energy of solvation -94.350 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.611 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.587 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds