Wall clock time and date at job start Tue Mar 31 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47333 * 332.25388 * 3 2 1 5 5 C 1.36901 * 120.00034 * 272.10559 * 4 3 2 6 6 H 1.07997 * 119.99647 * 192.76943 * 5 4 3 7 7 C 1.39019 * 120.00189 * 12.76194 * 5 4 3 8 8 N 1.31386 * 119.99597 * 13.57475 * 7 5 4 9 9 Si 1.86794 * 120.00099 * 193.56950 * 7 5 4 10 10 H 1.48495 * 109.47445 * 90.00352 * 9 7 5 11 11 H 1.48504 * 109.47142 * 210.00632 * 9 7 5 12 12 H 1.48499 * 109.47197 * 330.00227 * 9 7 5 13 13 C 1.34775 * 120.00080 * 92.09602 * 4 3 2 14 14 O 1.21632 * 120.00111 * 184.60450 * 13 4 3 15 15 C 1.47394 * 119.99693 * 4.61380 * 13 4 3 16 16 C 1.40219 * 119.95328 * 128.02722 * 15 13 4 17 17 C 1.36187 * 120.48492 * 179.97438 * 16 15 13 18 18 C 1.40043 * 120.09776 * 0.04387 * 17 16 15 19 19 N 1.35551 * 133.26194 * 179.97438 * 18 17 16 20 20 C 1.30928 * 109.71591 * 179.97438 * 19 18 17 21 21 O 1.35196 * 125.01158 * 179.97438 * 20 19 18 22 22 N 1.36260 * 109.97125 * 0.23544 * 20 19 18 23 23 C 1.46505 * 126.39506 * 179.76663 * 22 20 19 24 24 C 1.38562 * 107.20707 * 359.63170 * 22 20 19 25 25 C 1.38193 * 133.89723 * 180.09319 * 24 22 20 26 26 H 4.40640 * 5.51262 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.46982 * 212.25671 * 3 2 1 28 28 H 1.08996 * 109.47262 * 92.25575 * 3 2 1 29 29 H 0.97004 * 119.99596 * 180.02562 * 8 7 5 30 30 H 1.07992 * 119.75995 * 359.97438 * 16 15 13 31 31 H 1.08000 * 119.95112 * 180.02562 * 17 16 15 32 32 H 0.96700 * 113.99805 * 90.03111 * 21 20 19 33 33 H 1.09001 * 109.46985 * 90.02184 * 23 22 20 34 34 H 1.09001 * 109.46874 * 210.02403 * 23 22 20 35 35 H 1.09004 * 109.47076 * 330.02725 * 23 22 20 36 36 H 1.08008 * 120.20386 * 0.30656 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2215 0.6430 5 6 3.3221 -1.2538 1.9988 6 1 3.8702 -2.0683 2.4489 7 6 2.8068 -0.2382 2.7960 8 7 1.9246 0.6010 2.3022 9 14 3.3683 -0.0668 4.5693 10 1 4.5532 0.8263 4.6293 11 1 2.2696 0.5132 5.3827 12 1 3.7286 -1.4038 5.1059 13 6 3.4003 -2.3141 -0.1001 14 8 3.7257 -3.3535 0.4413 15 6 3.2965 -2.2493 -1.5690 16 6 4.3673 -2.6783 -2.3661 17 6 4.2828 -2.6237 -3.7243 18 6 3.1216 -2.1359 -4.3366 19 7 2.7552 -1.9654 -5.6305 20 6 1.5458 -1.4667 -5.6850 21 8 0.8780 -1.1740 -6.8235 22 7 1.0618 -1.2808 -4.4249 23 6 -0.2519 -0.7383 -4.0695 24 6 2.0429 -1.7036 -3.5425 25 6 2.1321 -1.7611 -2.1646 26 1 -1.0498 -0.0003 0.0000 27 1 3.0090 0.8699 0.5485 28 1 3.0094 0.0413 -1.0268 29 1 1.5653 1.3098 2.8584 30 1 5.2656 -3.0548 -1.8997 31 1 5.1126 -2.9568 -4.3300 32 1 0.3472 -1.9056 -7.1672 33 1 -0.9725 -1.5525 -3.9927 34 1 -0.1845 -0.2212 -3.1123 35 1 -0.5759 -0.0377 -4.8391 36 1 1.3060 -1.4305 -1.5524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:05 Heat of formation + Delta-G solvation = 92.049577 kcal Electronic energy + Delta-G solvation = -23864.758624 eV Core-core repulsion = 20318.450705 eV Total energy + Delta-G solvation = -3546.307918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06318 -39.17635 -37.83763 -36.09255 -35.24345 -34.21333 -32.19783 -31.40283 -30.27489 -28.92512 -27.00529 -26.52640 -24.95441 -23.07833 -22.36160 -20.76290 -19.75691 -18.49792 -18.04777 -17.34145 -16.75629 -16.59912 -16.39085 -15.65604 -14.95697 -14.51477 -14.40445 -14.15476 -13.96827 -13.69615 -13.34354 -13.14611 -12.76430 -12.56467 -12.34285 -12.23762 -11.77789 -11.60562 -11.26136 -11.12455 -11.00548 -10.55391 -10.41438 -10.26819 -9.91734 -9.49725 -9.36138 -8.88345 -8.62891 -8.16523 -8.02459 -7.78142 -6.39755 -3.95388 0.92204 1.70385 2.25033 2.59490 3.10708 3.19935 3.24720 3.58209 3.63598 3.77735 3.96058 4.08812 4.18466 4.51083 4.67104 4.83156 5.00522 5.04995 5.16469 5.34440 5.38878 5.50861 5.58810 5.66977 5.70788 5.90130 6.23724 6.27964 6.44257 6.59440 6.65289 6.79712 6.82426 6.98060 7.01550 7.44779 7.46280 7.83051 7.91424 8.32157 8.72820 9.01500 9.22826 9.78150 10.55598 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.004710 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.081200 B = 5943.606909 C = 6877.897858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.088 4.088 3 C 0.225 3.775 4 N -0.428 5.428 5 C -0.306 4.306 6 H 0.109 0.891 7 C 0.029 3.971 8 N -0.867 5.867 9 Si 0.931 3.069 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.481 3.519 14 O -0.577 6.577 15 C -0.073 4.073 16 C -0.082 4.082 17 C -0.075 4.075 18 C 0.060 3.940 19 N -0.489 5.489 20 C 0.439 3.561 21 O -0.444 6.444 22 N -0.492 5.492 23 C 0.075 3.925 24 C 0.053 3.947 25 C -0.091 4.091 26 H 0.198 0.802 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.405 0.595 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 0.744 -12.639 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.090 4.090 3 C 0.102 3.898 4 N -0.144 5.144 5 C -0.433 4.433 6 H 0.127 0.873 7 C -0.175 4.175 8 N -0.506 5.506 9 Si 0.758 3.242 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.270 3.730 14 O -0.462 6.462 15 C -0.078 4.078 16 C -0.103 4.103 17 C -0.095 4.095 18 C -0.059 4.059 19 N -0.220 5.220 20 C 0.136 3.864 21 O -0.245 6.245 22 N -0.194 5.194 23 C -0.067 4.067 24 C -0.054 4.054 25 C -0.112 4.112 26 H 0.215 0.785 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.896 0.853 -12.948 13.548 hybrid contribution -1.278 0.188 1.382 1.891 sum -5.173 1.041 -11.566 12.713 Atomic orbital electron populations 1.24194 0.95284 1.02891 1.07448 1.22973 0.94165 0.97657 0.94162 1.18534 0.84423 0.90878 0.95924 1.43669 1.54685 1.08905 1.07150 1.19812 1.33024 1.09792 0.80666 0.87336 1.25359 0.95066 0.96463 1.00577 1.69963 1.25811 1.17762 1.37051 0.85829 0.78175 0.78904 0.81295 1.20187 1.20965 1.19285 1.17734 0.85731 0.84243 0.85244 1.90652 1.53703 1.29254 1.72584 1.19994 0.93792 0.99093 0.94956 1.20697 0.98578 0.98814 0.92189 1.19844 0.95412 1.00431 0.93783 1.18836 0.95318 1.03958 0.87769 1.70528 1.10009 1.20988 1.20490 1.20284 0.88558 0.98153 0.79386 1.84768 1.64064 1.41322 1.34323 1.45486 1.15045 1.53362 1.05524 1.22021 0.81229 0.99796 1.03680 1.18513 0.90358 1.04303 0.92234 1.20558 0.99515 1.01063 0.90100 0.78486 0.86621 0.91808 0.91856 0.84585 0.85017 0.73732 0.90791 0.88950 0.89352 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.39 18.83 29.55 0.56 -4.84 16 2 C -0.09 -1.87 8.60 -37.12 -0.32 -2.19 16 3 C 0.23 4.94 4.75 -6.83 -0.03 4.90 16 4 N -0.43 -10.60 2.58 -119.17 -0.31 -10.90 16 5 C -0.31 -8.13 9.43 -15.00 -0.14 -8.27 16 6 H 0.11 3.03 7.30 -52.49 -0.38 2.64 16 7 C 0.03 0.72 5.14 -17.45 -0.09 0.63 16 8 N -0.87 -21.59 8.52 55.50 0.47 -21.12 16 9 Si 0.93 19.90 29.57 -169.99 -5.03 14.87 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.48 11.73 7.13 -12.53 -0.09 11.64 16 14 O -0.58 -15.94 16.69 5.25 0.09 -15.86 16 15 C -0.07 -1.47 4.80 -104.92 -0.50 -1.97 16 16 C -0.08 -1.43 9.66 -39.58 -0.38 -1.81 16 17 C -0.07 -1.19 10.03 -39.64 -0.40 -1.59 16 18 C 0.06 1.02 7.22 -84.60 -0.61 0.41 16 19 N -0.49 -8.03 11.29 -12.17 -0.14 -8.17 16 20 C 0.44 6.07 8.98 -88.90 -0.80 5.27 16 21 O -0.44 -4.43 13.51 -17.28 -0.23 -4.67 16 22 N -0.49 -6.79 3.23 -123.39 -0.40 -7.19 16 23 C 0.07 0.74 11.12 59.85 0.67 1.40 16 24 C 0.05 0.89 6.87 -83.89 -0.58 0.31 16 25 C -0.09 -1.67 7.64 -39.09 -0.30 -1.97 16 26 H 0.20 3.06 7.80 -54.10 -0.42 2.64 16 27 H 0.12 2.67 6.39 -51.93 -0.33 2.34 16 28 H 0.06 1.26 5.85 -51.93 -0.30 0.95 16 29 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.41 1.79 9.06 45.56 0.41 2.20 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.14 2.63 4.59 -52.48 -0.24 2.39 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -33.03 316.71 -6.30 -39.34 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -2.52 Total: 6.98 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.02 Total: 1.94 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.37 Total: -47.38 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.15 Total: -20.52 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.03 -6.30 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.388 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds