Wall clock time and date at job start Tue Mar 31 2020 03:58:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46510 * 1
3 3 C 1.38055 * 126.34626 * 2 1
4 4 C 1.38834 * 134.14004 * 359.77035 * 3 2 1
5 5 C 1.37855 * 119.68685 * 179.97438 * 4 3 2
6 6 C 1.38785 * 120.45054 * 0.02562 * 5 4 3
7 7 C 1.50696 * 119.66273 * 179.97438 * 6 5 4
8 8 N 1.46502 * 109.46776 * 90.00450 * 7 6 5
9 9 C 1.34778 * 120.00066 * 179.97438 * 8 7 6
10 10 O 1.21694 * 120.00049 * 0.02562 * 9 8 7
11 11 C 1.46378 * 120.00429 * 179.97438 * 9 8 7
12 12 H 1.07997 * 119.99333 * 0.02562 * 11 9 8
13 13 C 1.40045 * 120.00251 * 180.02562 * 11 9 8
14 14 N 1.30668 * 119.99796 * 0.02562 * 13 11 9
15 15 Si 1.86799 * 119.99798 * 180.02562 * 13 11 9
16 16 H 1.48496 * 109.47112 * 60.00389 * 15 13 11
17 17 H 1.48498 * 109.46592 * 179.97438 * 15 13 11
18 18 H 1.48492 * 109.47233 * 300.00031 * 15 13 11
19 19 C 1.36602 * 120.67048 * 0.02562 * 6 5 4
20 20 C 1.39739 * 119.88179 * 359.95217 * 19 6 5
21 21 N 1.35794 * 133.59742 * 180.02562 * 20 19 6
22 22 C 1.30109 * 109.64447 * 179.97438 * 21 20 19
23 23 C 1.50695 * 124.95016 * 180.02562 * 22 21 20
24 24 C 1.53000 * 117.49933 * 8.58482 * 23 22 21
25 25 C 1.53003 * 117.50010 * 299.95993 * 23 22 21
26 26 H 1.08996 * 109.47085 * 90.02480 * 1 2 3
27 27 H 1.09004 * 109.46692 * 210.02213 * 1 2 3
28 28 H 1.08994 * 109.46734 * 330.02509 * 1 2 3
29 29 H 1.07998 * 120.15869 * 359.97438 * 4 3 2
30 30 H 1.08004 * 119.77630 * 180.02562 * 5 4 3
31 31 H 1.09000 * 109.47369 * 209.99860 * 7 6 5
32 32 H 1.08993 * 109.47640 * 330.00527 * 7 6 5
33 33 H 0.96993 * 120.00215 * 359.97438 * 8 7 6
34 34 H 0.97004 * 120.00047 * 179.97438 * 14 13 11
35 35 H 1.07992 * 120.05773 * 179.97438 * 19 6 5
36 36 H 1.08996 * 115.55142 * 154.29427 * 23 22 21
37 37 H 1.09001 * 117.50132 * 359.97438 * 24 23 22
38 38 H 1.09001 * 117.49950 * 145.02079 * 24 23 22
39 39 H 1.08992 * 117.50261 * 214.97706 * 25 23 22
40 40 H 1.09003 * 117.49664 * 359.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2833 1.1120 0.0000
4 6 2.0538 2.4812 -0.0040
5 6 3.1221 3.3525 -0.0021
6 6 4.4234 2.8699 0.0033
7 6 5.5779 3.8383 0.0047
8 7 5.9476 4.1553 1.3864
9 6 6.9624 5.0070 1.6341
10 8 7.5713 5.5131 0.7099
11 6 7.3315 5.3242 3.0146
12 1 6.7909 4.8753 3.8347
13 6 8.3856 6.2096 3.2718
14 7 9.0393 6.7530 2.2795
15 14 8.8570 6.6137 5.0336
16 1 9.2547 5.3683 5.7377
17 1 9.9951 7.5676 5.0350
18 1 7.6963 7.2262 5.7285
19 6 4.6681 1.5260 0.0062
20 6 3.6008 0.6240 0.0048
21 7 3.5204 -0.7316 0.0073
22 6 2.2713 -1.0957 0.0049
23 6 1.7882 -2.5231 0.0070
24 6 2.8322 -3.6220 0.2151
25 6 2.2068 -3.4124 -1.1655
26 1 -0.3633 -0.0004 -1.0276
27 1 -0.3633 -0.8898 0.5142
28 1 -0.3632 0.8902 0.5134
29 1 1.0432 2.8620 -0.0086
30 1 2.9453 4.4180 -0.0048
31 1 6.4299 3.3887 -0.5053
32 1 5.2861 4.7525 -0.5121
33 1 5.4621 3.7522 2.1230
34 1 9.7693 7.3666 2.4576
35 1 5.6846 1.1613 0.0099
36 1 0.7970 -2.6833 0.4313
37 1 3.8687 -3.3125 0.3500
38 1 2.5281 -4.5054 0.7765
39 1 1.4913 -4.1579 -1.5123
40 1 2.8314 -2.9649 -1.9387
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000564830459.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:22
Heat of formation + Delta-G solvation = 59.389909 kcal
Electronic energy + Delta-G solvation = -22711.191253 eV
Core-core repulsion = 19299.300200 eV
Total energy + Delta-G solvation = -3411.891053 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 299.137 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.23829 -38.38436 -37.28194 -36.51574 -34.30898 -33.24903 -32.24140 -30.42765
-29.39575 -27.45279 -26.58448 -25.19758 -23.76214 -22.71358 -21.84131 -21.07581
-19.71505 -19.52111 -17.61602 -17.16777 -16.99995 -16.02928 -15.56331 -15.21396
-15.15574 -14.52287 -14.34022 -14.01333 -13.98175 -13.47292 -13.41594 -13.18854
-12.91576 -12.27494 -12.23413 -11.91161 -11.77033 -11.68065 -11.29153 -11.18872
-11.02849 -10.88306 -10.79826 -10.69299 -10.39710 -10.36451 -10.20015 -9.92314
-8.79479 -8.22466 -8.01294 -7.51026 -7.42945 -6.12767 -4.58172 0.98634
1.54744 2.40644 2.60722 3.20028 3.24451 3.26691 3.54999 3.87454
3.93384 4.17658 4.25635 4.36215 4.51072 4.62699 4.64623 4.68265
4.81955 4.95902 5.05739 5.10460 5.26091 5.29549 5.32757 5.47650
5.55223 5.58240 5.67543 5.78604 5.87434 5.90396 6.14744 6.29523
6.45699 6.48550 6.59671 6.91252 6.97247 7.04098 7.48861 7.87419
8.00042 8.15531 8.39217 9.07921 9.60620 10.65815 10.84511
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.024317 B = 0.002758 C = 0.002671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1151.187688 B =10151.634929 C =10480.933799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.493 5.493
3 C 0.045 3.955
4 C -0.118 4.118
5 C -0.079 4.079
6 C -0.095 4.095
7 C 0.174 3.826
8 N -0.763 5.763
9 C 0.555 3.445
10 O -0.581 6.581
11 C -0.545 4.545
12 H 0.067 0.933
13 C 0.087 3.913
14 N -0.769 5.769
15 Si 0.908 3.092
16 H -0.268 1.268
17 H -0.281 1.281
18 H -0.268 1.268
19 C -0.048 4.048
20 C 0.047 3.953
21 N -0.487 5.487
22 C 0.304 3.696
23 C -0.099 4.099
24 C -0.147 4.147
25 C -0.157 4.157
26 H 0.073 0.927
27 H 0.084 0.916
28 H 0.083 0.917
29 H 0.119 0.881
30 H 0.133 0.867
31 H 0.058 0.942
32 H 0.058 0.942
33 H 0.381 0.619
34 H 0.268 0.732
35 H 0.131 0.869
36 H 0.122 0.878
37 H 0.112 0.888
38 H 0.102 0.898
39 H 0.102 0.898
40 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.118 -17.687 -4.364 27.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.184 5.184
3 C -0.063 4.063
4 C -0.139 4.139
5 C -0.099 4.099
6 C -0.098 4.098
7 C 0.049 3.951
8 N -0.418 5.418
9 C 0.359 3.641
10 O -0.464 6.464
11 C -0.582 4.582
12 H 0.085 0.915
13 C -0.132 4.132
14 N -0.398 5.398
15 Si 0.732 3.268
16 H -0.193 1.193
17 H -0.206 1.206
18 H -0.193 1.193
19 C -0.068 4.068
20 C -0.070 4.070
21 N -0.207 5.207
22 C 0.039 3.961
23 C -0.118 4.118
24 C -0.184 4.184
25 C -0.195 4.195
26 H 0.091 0.909
27 H 0.103 0.897
28 H 0.102 0.898
29 H 0.137 0.863
30 H 0.151 0.849
31 H 0.076 0.924
32 H 0.077 0.923
33 H 0.213 0.787
34 H 0.079 0.921
35 H 0.149 0.851
36 H 0.140 0.860
37 H 0.131 0.869
38 H 0.120 0.880
39 H 0.121 0.879
40 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -18.934 -17.664 -5.129 26.398
hybrid contribution -0.971 0.577 1.266 1.697
sum -19.905 -17.088 -3.863 26.517
Atomic orbital electron populations
1.21918 0.76581 1.04344 1.03260 1.44941 1.06823 1.04981 1.61623
1.18855 0.91047 0.89206 1.07154 1.19851 0.99419 0.88530 1.06056
1.20902 0.91165 0.99559 0.98299 1.19681 0.95180 0.93681 1.01229
1.19770 0.92653 0.95178 0.87481 1.46199 1.39100 1.52046 1.04501
1.18223 0.77900 0.77416 0.90534 1.90600 1.54401 1.54839 1.46601
1.20848 1.17747 1.28582 0.90995 0.91502 1.25701 0.95044 0.94370
0.98087 1.70014 1.16052 1.21871 1.31853 0.86439 0.78433 0.78752
0.83137 1.19296 1.20596 1.19329 1.19961 0.97575 0.90843 0.98394
1.18943 0.92170 0.89769 1.06161 1.70276 1.16923 1.11188 1.22295
1.22386 0.85297 0.88950 0.99428 1.20239 1.00348 0.84194 1.07068
1.23026 0.99122 0.97585 0.98705 1.23061 1.03457 1.00926 0.92081
0.90882 0.89719 0.89808 0.86254 0.84940 0.92414 0.92345 0.78749
0.92097 0.85135 0.86005 0.86924 0.87957 0.87935 0.88092
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.52 10.96 59.85 0.66 1.18 16
2 N -0.49 -5.65 3.21 -118.50 -0.38 -6.03 16
3 C 0.05 0.64 6.87 -83.99 -0.58 0.06 16
4 C -0.12 -1.51 10.05 -39.50 -0.40 -1.91 16
5 C -0.08 -1.13 9.67 -39.52 -0.38 -1.52 16
6 C -0.09 -1.57 5.21 -105.01 -0.55 -2.11 16
7 C 0.17 3.47 5.78 -5.19 -0.03 3.44 16
8 N -0.76 -17.67 5.54 -62.90 -0.35 -18.02 16
9 C 0.56 16.16 7.75 -12.98 -0.10 16.06 16
10 O -0.58 -19.18 15.02 5.19 0.08 -19.11 16
11 C -0.54 -15.73 9.54 -35.63 -0.34 -16.07 16
12 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16
13 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16
14 N -0.77 -23.48 11.83 55.55 0.66 -22.82 16
15 Si 0.91 20.53 29.56 -169.99 -5.02 15.51 16
16 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16
17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16
19 C -0.05 -0.79 9.67 -39.61 -0.38 -1.17 16
20 C 0.05 0.77 7.23 -84.70 -0.61 0.15 16
21 N -0.49 -7.57 10.76 -8.24 -0.09 -7.66 16
22 C 0.30 3.75 7.42 -154.83 -1.15 2.60 16
23 C -0.10 -0.81 5.89 -91.77 -0.54 -1.35 16
24 C -0.15 -1.13 10.12 -26.73 -0.27 -1.40 16
25 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16
26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
27 H 0.08 0.35 7.16 -51.93 -0.37 -0.02 16
28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16
30 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16
31 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16
32 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16
33 H 0.38 8.03 8.44 -40.82 -0.34 7.68 16
34 H 0.27 7.43 8.29 -40.82 -0.34 7.10 16
35 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16
36 H 0.12 0.68 7.29 -51.93 -0.38 0.30 16
37 H 0.11 1.11 7.85 -51.93 -0.41 0.70 16
38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
LS Contribution 347.04 15.07 5.23 5.23
Total: -1.00 -37.38 347.04 -10.19 -47.57
By element:
Atomic # 1 Polarization: 11.62 SS G_CDS: -5.27 Total: 6.35 kcal
Atomic # 6 Polarization: 4.02 SS G_CDS: -5.04 Total: -1.02 kcal
Atomic # 7 Polarization: -54.37 SS G_CDS: -0.16 Total: -54.53 kcal
Atomic # 8 Polarization: -19.18 SS G_CDS: 0.08 Total: -19.11 kcal
Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -37.38 -10.19 -47.57 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000564830459.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.962 kcal
(2) G-P(sol) polarization free energy of solvation -37.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds