Wall clock time and date at job start Tue Mar 31 2020 03:58:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46510 * 1
3 3 C 1.38055 * 126.34626 * 2 1
4 4 C 1.38834 * 134.14004 * 359.77035 * 3 2 1
5 5 C 1.37855 * 119.68685 * 179.97438 * 4 3 2
6 6 C 1.38785 * 120.45054 * 0.02562 * 5 4 3
7 7 C 1.50696 * 119.66273 * 179.97438 * 6 5 4
8 8 N 1.46502 * 109.46776 * 90.00450 * 7 6 5
9 9 C 1.34778 * 120.00066 * 179.97438 * 8 7 6
10 10 O 1.21694 * 120.00049 * 0.02562 * 9 8 7
11 11 C 1.46378 * 120.00429 * 179.97438 * 9 8 7
12 12 H 1.07997 * 119.99333 * 0.02562 * 11 9 8
13 13 C 1.40045 * 120.00251 * 180.02562 * 11 9 8
14 14 N 1.30668 * 119.99796 * 0.02562 * 13 11 9
15 15 Si 1.86799 * 119.99798 * 180.02562 * 13 11 9
16 16 H 1.48496 * 109.47112 * 60.00389 * 15 13 11
17 17 H 1.48498 * 109.46592 * 179.97438 * 15 13 11
18 18 H 1.48492 * 109.47233 * 300.00031 * 15 13 11
19 19 C 1.36602 * 120.67048 * 0.02562 * 6 5 4
20 20 C 1.39739 * 119.88179 * 359.95217 * 19 6 5
21 21 N 1.35794 * 133.59742 * 180.02562 * 20 19 6
22 22 C 1.30109 * 109.64447 * 179.97438 * 21 20 19
23 23 C 1.50695 * 124.95016 * 180.02562 * 22 21 20
24 24 C 1.53000 * 117.49933 * 8.58482 * 23 22 21
25 25 C 1.53003 * 117.50010 * 299.95993 * 23 22 21
26 26 H 1.08996 * 109.47085 * 90.02480 * 1 2 3
27 27 H 1.09004 * 109.46692 * 210.02213 * 1 2 3
28 28 H 1.08994 * 109.46734 * 330.02509 * 1 2 3
29 29 H 1.07998 * 120.15869 * 359.97438 * 4 3 2
30 30 H 1.08004 * 119.77630 * 180.02562 * 5 4 3
31 31 H 1.09000 * 109.47369 * 209.99860 * 7 6 5
32 32 H 1.08993 * 109.47640 * 330.00527 * 7 6 5
33 33 H 0.96993 * 120.00215 * 359.97438 * 8 7 6
34 34 H 0.97004 * 120.00047 * 179.97438 * 14 13 11
35 35 H 1.07992 * 120.05773 * 179.97438 * 19 6 5
36 36 H 1.08996 * 115.55142 * 154.29427 * 23 22 21
37 37 H 1.09001 * 117.50132 * 359.97438 * 24 23 22
38 38 H 1.09001 * 117.49950 * 145.02079 * 24 23 22
39 39 H 1.08992 * 117.50261 * 214.97706 * 25 23 22
40 40 H 1.09003 * 117.49664 * 359.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2833 1.1120 0.0000
4 6 2.0538 2.4812 -0.0040
5 6 3.1221 3.3525 -0.0021
6 6 4.4234 2.8699 0.0033
7 6 5.5779 3.8383 0.0047
8 7 5.9476 4.1553 1.3864
9 6 6.9624 5.0070 1.6341
10 8 7.5713 5.5131 0.7099
11 6 7.3315 5.3242 3.0146
12 1 6.7909 4.8753 3.8347
13 6 8.3856 6.2096 3.2718
14 7 9.0393 6.7530 2.2795
15 14 8.8570 6.6137 5.0336
16 1 9.2547 5.3683 5.7377
17 1 9.9951 7.5676 5.0350
18 1 7.6963 7.2262 5.7285
19 6 4.6681 1.5260 0.0062
20 6 3.6008 0.6240 0.0048
21 7 3.5204 -0.7316 0.0073
22 6 2.2713 -1.0957 0.0049
23 6 1.7882 -2.5231 0.0070
24 6 2.8322 -3.6220 0.2151
25 6 2.2068 -3.4124 -1.1655
26 1 -0.3633 -0.0004 -1.0276
27 1 -0.3633 -0.8898 0.5142
28 1 -0.3632 0.8902 0.5134
29 1 1.0432 2.8620 -0.0086
30 1 2.9453 4.4180 -0.0048
31 1 6.4299 3.3887 -0.5053
32 1 5.2861 4.7525 -0.5121
33 1 5.4621 3.7522 2.1230
34 1 9.7693 7.3666 2.4576
35 1 5.6846 1.1613 0.0099
36 1 0.7970 -2.6833 0.4313
37 1 3.8687 -3.3125 0.3500
38 1 2.5281 -4.5054 0.7765
39 1 1.4913 -4.1579 -1.5123
40 1 2.8314 -2.9649 -1.9387
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000564830459.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:21
Heat of formation + Delta-G solvation = 34.264326 kcal
Electronic energy + Delta-G solvation = -22712.280780 eV
Core-core repulsion = 19299.300200 eV
Total energy + Delta-G solvation = -3412.980580 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 299.137 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-43.23916 -39.81020 -38.78382 -37.61497 -35.25718 -35.08439 -34.38907 -31.81388
-30.57254 -28.85006 -27.89534 -26.61635 -24.91168 -23.31182 -22.89603 -22.27547
-21.66379 -20.49916 -19.37710 -18.25590 -18.07661 -17.45922 -16.93273 -16.65005
-16.12024 -16.04913 -15.80383 -15.44089 -14.99319 -14.78153 -14.69289 -14.28062
-14.10979 -13.72932 -13.29929 -13.21809 -12.90217 -12.80896 -12.78220 -12.66975
-12.59503 -12.42842 -12.32942 -12.04179 -11.49456 -11.43888 -11.34757 -10.97178
-10.91629 -9.94462 -9.49894 -9.22350 -9.09552 -8.28063 -6.85637 -0.08923
0.35405 1.40262 1.44265 1.55907 1.58089 1.64323 2.25687 2.47252
2.67029 2.89362 3.08967 3.35739 3.40150 3.61843 3.73956 3.79727
3.94907 3.95958 4.05035 4.10429 4.22639 4.38172 4.41977 4.56568
4.59769 4.67192 4.78118 4.79639 4.81051 4.93742 5.06699 5.11459
5.29367 5.31914 5.37520 5.45099 5.63349 5.81949 5.87556 6.16079
6.19436 6.26405 6.85987 6.86564 7.53359 8.48469 8.67326
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.024317 B = 0.002758 C = 0.002671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1151.187688 B =10151.634929 C =10480.933799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.488 5.488
3 C 0.039 3.961
4 C -0.097 4.097
5 C -0.089 4.089
6 C -0.098 4.098
7 C 0.180 3.820
8 N -0.749 5.749
9 C 0.538 3.462
10 O -0.632 6.632
11 C -0.573 4.573
12 H 0.086 0.914
13 C 0.028 3.972
14 N -0.822 5.822
15 Si 1.000 3.000
16 H -0.256 1.256
17 H -0.273 1.273
18 H -0.253 1.253
19 C -0.066 4.066
20 C 0.021 3.979
21 N -0.534 5.534
22 C 0.309 3.691
23 C -0.104 4.104
24 C -0.152 4.152
25 C -0.145 4.145
26 H 0.089 0.911
27 H 0.112 0.888
28 H 0.096 0.904
29 H 0.160 0.840
30 H 0.146 0.854
31 H 0.037 0.963
32 H 0.053 0.947
33 H 0.393 0.607
34 H 0.275 0.725
35 H 0.112 0.888
36 H 0.160 0.840
37 H 0.081 0.919
38 H 0.131 0.869
39 H 0.136 0.864
40 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.787 -19.165 -2.674 30.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.177 5.177
3 C -0.071 4.071
4 C -0.117 4.117
5 C -0.109 4.109
6 C -0.101 4.101
7 C 0.056 3.944
8 N -0.403 5.403
9 C 0.343 3.657
10 O -0.520 6.520
11 C -0.610 4.610
12 H 0.104 0.896
13 C -0.187 4.187
14 N -0.451 5.451
15 Si 0.819 3.181
16 H -0.180 1.180
17 H -0.197 1.197
18 H -0.177 1.177
19 C -0.086 4.086
20 C -0.097 4.097
21 N -0.254 5.254
22 C 0.044 3.956
23 C -0.124 4.124
24 C -0.190 4.190
25 C -0.183 4.183
26 H 0.108 0.892
27 H 0.131 0.869
28 H 0.115 0.885
29 H 0.177 0.823
30 H 0.164 0.836
31 H 0.055 0.945
32 H 0.071 0.929
33 H 0.226 0.774
34 H 0.085 0.915
35 H 0.130 0.870
36 H 0.177 0.823
37 H 0.100 0.900
38 H 0.149 0.851
39 H 0.154 0.846
40 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -22.688 -19.190 -3.441 29.914
hybrid contribution 0.062 0.872 0.653 1.091
sum -22.626 -18.318 -2.788 29.245
Atomic orbital electron populations
1.22383 0.73161 1.06495 1.05054 1.45271 1.08685 1.03617 1.60118
1.19068 0.90767 0.90431 1.06788 1.20151 1.00643 0.87634 1.03271
1.21000 0.90392 1.00590 0.98902 1.19280 0.94917 0.92609 1.03290
1.19708 0.93535 0.95742 0.85388 1.45882 1.37638 1.50474 1.06348
1.18628 0.78612 0.77862 0.90624 1.90550 1.56461 1.57042 1.47912
1.21389 1.18749 1.29410 0.91444 0.89601 1.26999 0.94318 0.93443
1.03964 1.70184 1.16864 1.22711 1.35374 0.85046 0.78561 0.78959
0.75554 1.18023 1.19734 1.17653 1.19830 0.97323 0.91346 1.00149
1.19105 0.93156 0.90472 1.06953 1.70254 1.19387 1.10998 1.24769
1.23209 0.84686 0.90881 0.96807 1.20606 1.01861 0.81698 1.08229
1.23056 0.97611 0.98408 0.99901 1.23109 1.03362 1.00746 0.91055
0.89206 0.86912 0.88490 0.82295 0.83630 0.94461 0.92908 0.77410
0.91491 0.86984 0.82259 0.90006 0.85132 0.84567 0.90378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.57 10.96 127.77 1.40 1.97 16
2 N -0.49 -9.89 3.21 -528.83 -1.70 -11.59 16
3 C 0.04 1.05 6.87 38.86 0.27 1.32 16
4 C -0.10 -2.26 10.05 22.32 0.22 -2.04 16
5 C -0.09 -2.49 9.67 22.31 0.22 -2.27 16
6 C -0.10 -3.39 5.21 -20.12 -0.10 -3.50 16
7 C 0.18 7.70 5.78 85.63 0.49 8.20 16
8 N -0.75 -36.31 5.54 -471.14 -2.61 -38.92 16
9 C 0.54 32.72 7.75 86.36 0.67 33.39 16
10 O -0.63 -44.02 15.02 -4.33 -0.07 -44.08 16
11 C -0.57 -33.76 9.54 24.83 0.24 -33.53 16
12 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16
13 C 0.03 1.60 5.50 85.30 0.47 2.06 16
14 N -0.82 -51.70 11.83 21.83 0.26 -51.45 16
15 Si 1.00 42.10 29.56 68.60 2.03 44.12 16
16 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16
17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16
18 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16
19 C -0.07 -2.36 9.67 22.25 0.22 -2.15 16
20 C 0.02 0.70 7.23 39.45 0.29 0.98 16
21 N -0.53 -16.99 10.76 -179.97 -1.94 -18.93 16
22 C 0.31 7.17 7.42 137.92 1.02 8.20 16
23 C -0.10 -1.41 5.89 -11.54 -0.07 -1.48 16
24 C -0.15 -2.08 10.12 30.60 0.31 -1.77 16
25 C -0.14 -1.69 10.23 30.60 0.31 -1.38 16
26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16
27 H 0.11 0.33 7.16 -2.38 -0.02 0.31 16
28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16
29 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16
30 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16
31 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16
32 H 0.05 2.30 8.08 -2.39 -0.02 2.28 16
33 H 0.39 17.07 8.44 -92.71 -0.78 16.28 16
34 H 0.28 15.65 8.29 -92.70 -0.77 14.88 16
35 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16
36 H 0.16 0.95 7.29 -2.39 -0.02 0.93 16
37 H 0.08 1.66 7.85 -2.39 -0.02 1.64 16
38 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16
39 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
Total: -1.00 -87.27 347.04 2.22 -85.05
By element:
Atomic # 1 Polarization: 27.49 SS G_CDS: 0.29 Total: 27.78 kcal
Atomic # 6 Polarization: 2.06 SS G_CDS: 5.95 Total: 8.02 kcal
Atomic # 7 Polarization: -114.90 SS G_CDS: -5.99 Total: -120.89 kcal
Atomic # 8 Polarization: -44.02 SS G_CDS: -0.07 Total: -44.08 kcal
Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal
Total: -87.27 2.22 -85.05 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000564830459.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.318 kcal
(2) G-P(sol) polarization free energy of solvation -87.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.049 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.053 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.264 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds