Wall clock time and date at job start Tue Mar 31 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46771 * 2 1 4 4 C 1.46498 * 120.00143 * 270.00014 * 3 2 1 5 5 C 1.50696 * 109.47128 * 270.00126 * 4 3 2 6 6 H 1.07998 * 120.00057 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00154 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00039 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47117 * 90.00856 * 9 7 5 11 11 H 1.48499 * 109.47299 * 210.00223 * 9 7 5 12 12 H 1.48497 * 109.47552 * 330.00740 * 9 7 5 13 13 C 1.34781 * 119.99807 * 90.00368 * 3 2 1 14 14 O 1.21286 * 119.99674 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00031 * 359.97438 * 13 3 2 16 16 S 1.80995 * 109.46926 * 180.02562 * 15 13 3 17 17 C 1.76200 * 100.00065 * 180.02562 * 16 15 13 18 18 N 1.29964 * 125.41910 * 0.02562 * 17 16 15 19 19 N 1.40116 * 108.68916 * 180.02562 * 18 17 16 20 20 H 0.96994 * 126.35042 * 180.02562 * 19 18 17 21 21 C 1.36719 * 107.30460 * 359.97438 * 19 18 17 22 22 N 1.31052 * 126.56035 * 180.02562 * 21 19 18 23 23 N 1.37305 * 106.87758 * 0.02562 * 21 19 18 24 24 C 1.46503 * 126.01218 * 179.73396 * 23 21 19 25 25 H 1.09007 * 109.47367 * 299.99638 * 1 2 3 26 26 H 1.09005 * 109.47560 * 60.00127 * 1 2 3 27 27 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47186 * 240.00544 * 2 1 3 29 29 H 1.09000 * 109.47120 * 119.99718 * 2 1 3 30 30 H 1.09002 * 109.47127 * 29.99988 * 4 3 2 31 31 H 1.09002 * 109.47391 * 150.00408 * 4 3 2 32 32 H 0.96995 * 120.00270 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46867 * 60.00736 * 15 13 3 34 34 H 1.08994 * 109.47744 * 300.00495 * 15 13 3 35 35 H 0.96997 * 119.99914 * 359.97346 * 22 21 19 36 36 H 1.08996 * 109.47087 * 90.02865 * 24 23 21 37 37 H 1.09004 * 109.47369 * 210.02753 * 24 23 21 38 38 H 1.08999 * 109.47215 * 330.02947 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7037 6 1 4.3427 1.2311 -1.0958 7 6 4.1489 2.3899 -2.8780 8 7 3.3489 3.1259 -3.6181 9 14 5.9133 2.0970 -3.4168 10 1 5.9774 0.8757 -4.2593 11 1 6.3919 3.2642 -4.2002 12 1 6.7734 1.9181 -2.2196 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1603 1.1672 15 6 1.9913 1.3063 2.4723 16 16 2.3828 2.4154 3.8480 17 6 2.0097 1.3593 5.2082 18 7 1.5785 0.1367 5.1164 19 7 1.3974 -0.3737 6.4086 20 1 1.0839 -1.2628 6.6369 21 6 1.7454 0.6134 7.2883 22 7 1.7185 0.5384 8.5964 23 7 2.1285 1.6983 6.5389 24 6 2.5786 2.9907 7.0618 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1412 -1.1384 32 1 3.6749 3.5164 -4.4439 33 1 2.6213 0.4187 2.5302 34 1 0.9433 1.0124 2.5300 35 1 1.4292 -0.2799 9.0294 36 1 3.6602 2.9718 7.1953 37 1 2.3130 3.7797 6.3581 38 1 2.0974 3.1821 8.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581834264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:14 Heat of formation + Delta-G solvation = 69.073116 kcal Electronic energy + Delta-G solvation = -21631.452364 eV Core-core repulsion = 18251.884814 eV Total energy + Delta-G solvation = -3379.567550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84855 -39.20824 -35.49489 -34.78523 -34.29589 -32.92005 -30.50830 -30.13823 -29.40711 -27.29373 -26.73428 -23.64681 -23.13249 -22.75432 -21.18954 -19.20627 -18.31888 -16.76613 -16.69883 -16.43525 -16.37173 -16.17553 -15.65285 -15.46362 -15.02406 -14.29893 -13.75785 -13.52543 -13.51070 -13.36134 -12.95094 -12.82057 -12.18138 -12.08315 -11.91221 -11.75412 -11.59298 -11.28428 -10.96885 -10.84833 -10.77725 -10.59493 -10.53950 -10.19672 -9.78696 -9.71685 -9.25188 -8.48807 -8.43026 -7.84126 -7.61312 -6.10041 -4.15155 0.76983 1.63322 1.65994 2.09252 2.44015 3.12003 3.27358 3.34641 3.38295 3.39307 3.74517 4.39843 4.46698 4.64421 4.76699 5.01335 5.11275 5.18076 5.24968 5.30238 5.38930 5.48637 5.54528 5.69067 5.74214 5.96653 6.15141 6.40996 6.48165 6.68498 6.91087 7.33050 7.39960 7.50700 7.85275 8.15050 8.19962 8.20124 8.71957 8.91403 9.50174 10.98153 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.003356 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.243931 B = 8340.026250 C = 8848.463897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.523 3.477 14 O -0.527 6.527 15 C -0.149 4.149 16 S 0.101 5.899 17 C 0.249 3.751 18 N -0.301 5.301 19 N -0.579 5.579 20 H 0.447 0.553 21 C 0.581 3.419 22 N -0.795 5.795 23 N -0.519 5.519 24 C 0.103 3.897 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.346 0.654 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 -6.468 16.887 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.317 5.317 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.307 3.693 14 O -0.405 6.405 15 C -0.301 4.301 16 S 0.327 5.673 17 C -0.137 4.137 18 N -0.129 5.129 19 N -0.318 5.318 20 H 0.294 0.706 21 C 0.212 3.788 22 N -0.449 5.449 23 N -0.235 5.235 24 C -0.038 4.038 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.106 -4.633 16.708 18.075 hybrid contribution 0.153 -2.536 -0.003 2.541 sum -4.953 -7.170 16.705 18.842 Atomic orbital electron populations 1.22219 0.96494 1.01671 1.02405 1.21512 0.93752 0.83823 1.03075 1.48189 1.62925 1.13410 1.07194 1.19361 0.96540 0.93719 0.77579 1.21410 0.96796 1.32209 1.06402 0.92345 1.24927 0.97922 0.94808 0.96343 1.69923 1.35761 1.33244 1.14321 0.86489 0.84561 0.77701 0.78641 1.20643 1.21052 1.19814 1.19268 0.79383 0.86696 0.83973 1.90731 1.45869 1.17452 1.86413 1.23998 1.07969 1.02942 0.95180 1.86615 1.81353 1.10966 0.88410 1.26671 1.00305 0.96208 0.90516 1.77086 1.25038 1.07485 1.03253 1.46784 1.67471 1.15569 1.02013 0.70600 1.19893 0.89655 0.82034 0.87220 1.69978 1.41676 1.33598 0.99623 1.44377 1.63119 1.13582 1.02397 1.21874 1.00934 0.79883 1.01133 0.93051 0.91850 0.91965 0.89520 0.91507 0.94639 0.93609 0.92629 0.86068 0.86172 0.83625 0.90809 0.89427 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.47 2.46 -175.06 -0.43 -11.90 16 4 C 0.25 6.11 5.16 -5.20 -0.03 6.08 16 5 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 9 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.52 9.99 7.69 -10.98 -0.08 9.90 16 14 O -0.53 -12.21 15.44 5.55 0.09 -12.12 16 15 C -0.15 -2.07 4.21 36.00 0.15 -1.92 16 16 S 0.10 1.34 20.72 -107.50 -2.23 -0.88 16 17 C 0.25 3.13 8.02 -88.21 -0.71 2.42 16 18 N -0.30 -3.80 11.90 30.71 0.37 -3.43 16 19 N -0.58 -6.31 7.47 30.07 0.22 -6.09 16 20 H 0.45 3.50 8.96 -182.59 -1.64 1.86 16 21 C 0.58 7.00 9.09 -320.54 -2.91 4.08 16 22 N -0.80 -9.47 14.04 30.08 0.42 -9.04 16 23 N -0.52 -6.11 3.22 -125.26 -0.40 -6.51 16 24 C 0.10 0.91 10.89 59.85 0.65 1.56 16 25 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.33 8.07 -51.93 -0.42 0.92 16 29 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.12 1.54 7.40 -51.92 -0.38 1.15 16 34 H 0.12 1.45 7.18 -51.92 -0.37 1.08 16 35 H 0.35 3.44 8.92 -40.82 -0.36 3.07 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.66 7.70 -51.93 -0.40 0.26 16 38 H 0.09 0.78 8.11 -51.93 -0.42 0.35 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -33.25 341.53 -10.42 -43.67 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.33 Total: 1.17 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.99 Total: 8.79 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.92 Total: -62.07 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.23 Total: -0.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.25 -10.42 -43.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581834264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.746 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds