Wall clock time and date at job start Tue Mar 31 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46771 * 2 1 4 4 C 1.46498 * 120.00143 * 270.00014 * 3 2 1 5 5 C 1.50696 * 109.47128 * 270.00126 * 4 3 2 6 6 H 1.07998 * 120.00057 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00154 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00039 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47117 * 90.00856 * 9 7 5 11 11 H 1.48499 * 109.47299 * 210.00223 * 9 7 5 12 12 H 1.48497 * 109.47552 * 330.00740 * 9 7 5 13 13 C 1.34781 * 119.99807 * 90.00368 * 3 2 1 14 14 O 1.21286 * 119.99674 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00031 * 359.97438 * 13 3 2 16 16 S 1.80995 * 109.46926 * 180.02562 * 15 13 3 17 17 C 1.76200 * 100.00065 * 180.02562 * 16 15 13 18 18 N 1.29964 * 125.41910 * 0.02562 * 17 16 15 19 19 N 1.40116 * 108.68916 * 180.02562 * 18 17 16 20 20 H 0.96994 * 126.35042 * 180.02562 * 19 18 17 21 21 C 1.36719 * 107.30460 * 359.97438 * 19 18 17 22 22 N 1.31052 * 126.56035 * 180.02562 * 21 19 18 23 23 N 1.37305 * 106.87758 * 0.02562 * 21 19 18 24 24 C 1.46503 * 126.01218 * 179.73396 * 23 21 19 25 25 H 1.09007 * 109.47367 * 299.99638 * 1 2 3 26 26 H 1.09005 * 109.47560 * 60.00127 * 1 2 3 27 27 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47186 * 240.00544 * 2 1 3 29 29 H 1.09000 * 109.47120 * 119.99718 * 2 1 3 30 30 H 1.09002 * 109.47127 * 29.99988 * 4 3 2 31 31 H 1.09002 * 109.47391 * 150.00408 * 4 3 2 32 32 H 0.96995 * 120.00270 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46867 * 60.00736 * 15 13 3 34 34 H 1.08994 * 109.47744 * 300.00495 * 15 13 3 35 35 H 0.96997 * 119.99914 * 359.97346 * 22 21 19 36 36 H 1.08996 * 109.47087 * 90.02865 * 24 23 21 37 37 H 1.09004 * 109.47369 * 210.02753 * 24 23 21 38 38 H 1.08999 * 109.47215 * 330.02947 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7037 6 1 4.3427 1.2311 -1.0958 7 6 4.1489 2.3899 -2.8780 8 7 3.3489 3.1259 -3.6181 9 14 5.9133 2.0970 -3.4168 10 1 5.9774 0.8757 -4.2593 11 1 6.3919 3.2642 -4.2002 12 1 6.7734 1.9181 -2.2196 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1603 1.1672 15 6 1.9913 1.3063 2.4723 16 16 2.3828 2.4154 3.8480 17 6 2.0097 1.3593 5.2082 18 7 1.5785 0.1367 5.1164 19 7 1.3974 -0.3737 6.4086 20 1 1.0839 -1.2628 6.6369 21 6 1.7454 0.6134 7.2883 22 7 1.7185 0.5384 8.5964 23 7 2.1285 1.6983 6.5389 24 6 2.5786 2.9907 7.0618 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1412 -1.1384 32 1 3.6749 3.5164 -4.4439 33 1 2.6213 0.4187 2.5302 34 1 0.9433 1.0124 2.5300 35 1 1.4292 -0.2799 9.0294 36 1 3.6602 2.9718 7.1953 37 1 2.3130 3.7797 6.3581 38 1 2.0974 3.1821 8.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581834264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:14 Heat of formation + Delta-G solvation = 49.259360 kcal Electronic energy + Delta-G solvation = -21632.311553 eV Core-core repulsion = 18251.884814 eV Total energy + Delta-G solvation = -3380.426739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.73705 -40.75492 -37.05083 -35.62591 -35.20026 -34.92411 -31.97232 -31.34087 -30.40700 -28.58390 -28.04411 -24.93818 -24.53426 -24.12945 -22.10600 -20.37730 -19.54102 -18.61994 -18.04960 -17.75808 -17.30928 -17.20471 -16.84349 -16.54975 -16.47305 -16.01724 -14.97363 -14.76285 -14.66381 -14.41057 -14.23184 -13.81192 -13.66927 -13.52207 -13.23846 -13.04417 -12.77566 -12.67699 -12.56473 -12.50177 -12.15530 -11.93476 -11.75280 -11.69590 -11.41328 -10.84188 -10.66987 -10.61718 -9.53253 -9.35328 -8.55559 -8.20811 -6.34865 -0.26138 0.68859 0.69231 1.20305 1.39271 1.41978 1.51861 1.54839 1.65191 2.24050 2.43110 2.56850 3.09716 3.42302 3.65838 3.86469 3.93562 4.08557 4.30023 4.43274 4.46300 4.54795 4.63914 4.79339 4.92809 4.93310 4.99070 5.07019 5.23995 5.40348 5.57365 5.67745 5.81916 5.87771 6.06983 6.62288 6.66255 6.75337 7.21591 7.37606 7.38640 8.86427 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.003356 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.243931 B = 8340.026250 C = 8848.463897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.592 5.592 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.517 3.483 14 O -0.577 6.577 15 C -0.135 4.135 16 S 0.096 5.904 17 C 0.247 3.753 18 N -0.308 5.308 19 N -0.570 5.570 20 H 0.458 0.542 21 C 0.572 3.428 22 N -0.805 5.805 23 N -0.523 5.523 24 C 0.097 3.903 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.026 0.974 31 H 0.003 0.997 32 H 0.267 0.733 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.355 0.645 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 -8.303 18.205 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.303 3.697 14 O -0.458 6.458 15 C -0.286 4.286 16 S 0.321 5.679 17 C -0.140 4.140 18 N -0.135 5.135 19 N -0.311 5.311 20 H 0.308 0.692 21 C 0.202 3.798 22 N -0.460 5.460 23 N -0.238 5.238 24 C -0.044 4.044 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.914 -6.527 18.053 19.815 hybrid contribution 0.040 -1.973 -0.346 2.004 sum -4.874 -8.500 17.707 20.237 Atomic orbital electron populations 1.22161 0.94461 1.03591 1.01838 1.21831 0.95406 0.81073 1.04290 1.48163 1.63090 1.15159 1.05828 1.18782 0.95405 0.91785 0.79886 1.21711 0.97857 1.32030 1.06521 0.92609 1.25810 1.02168 0.94492 0.96487 1.70041 1.37734 1.34175 1.14801 0.85452 0.79286 0.78053 0.78252 1.19041 1.20839 1.19625 1.20023 0.78037 0.86269 0.85357 1.90704 1.47910 1.19806 1.87407 1.23803 1.09849 1.02675 0.92285 1.86742 1.81712 1.10950 0.88498 1.26451 1.00720 0.96191 0.90604 1.77018 1.24929 1.07502 1.04085 1.46824 1.67055 1.16018 1.01243 0.69174 1.20023 0.89921 0.82352 0.87468 1.69960 1.41906 1.34403 0.99724 1.44614 1.62830 1.14279 1.02103 1.22076 1.01580 0.79130 1.01579 0.92121 0.93949 0.88724 0.90470 0.88102 0.95581 0.97920 0.92431 0.84153 0.83748 0.82652 0.89905 0.88466 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.24 71.98 0.74 -2.93 16 2 C 0.10 2.67 5.93 86.38 0.51 3.18 16 3 N -0.59 -23.22 2.46 -826.16 -2.03 -25.24 16 4 C 0.26 13.49 5.16 85.63 0.44 13.93 16 5 C -0.54 -30.12 9.39 25.60 0.24 -29.88 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 9 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.52 19.63 7.69 87.66 0.67 20.30 16 14 O -0.58 -27.45 15.44 -3.05 -0.05 -27.50 16 15 C -0.13 -3.47 4.21 71.24 0.30 -3.17 16 16 S 0.10 2.41 20.72 -56.49 -1.17 1.24 16 17 C 0.25 5.69 8.02 179.51 1.44 7.13 16 18 N -0.31 -6.94 11.90 -56.74 -0.68 -7.61 16 19 N -0.57 -11.05 7.47 -58.77 -0.44 -11.49 16 20 H 0.46 6.06 8.96 -213.32 -1.91 4.15 16 21 C 0.57 12.60 9.09 260.69 2.37 14.97 16 22 N -0.80 -17.67 14.04 -58.75 -0.82 -18.50 16 23 N -0.52 -11.30 3.22 -550.20 -1.77 -13.07 16 24 C 0.10 1.55 10.89 127.77 1.39 2.94 16 25 H 0.06 1.26 7.22 -2.38 -0.02 1.24 16 26 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.08 2.29 8.07 -2.39 -0.02 2.28 16 29 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 30 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 31 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 32 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.14 3.11 7.40 -2.40 -0.02 3.10 16 34 H 0.14 3.04 7.18 -2.40 -0.02 3.02 16 35 H 0.35 6.40 8.92 -92.71 -0.83 5.57 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.34 7.70 -2.38 -0.02 1.32 16 38 H 0.10 1.48 8.11 -2.39 -0.02 1.46 16 Total: -1.00 -73.13 341.53 2.29 -70.84 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -1.63 Total: 12.55 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 8.57 Total: 27.48 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -5.46 Total: -130.48 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.17 Total: 1.24 kcal Total: -73.13 2.29 -70.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581834264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.099 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds