Wall clock time and date at job start Tue Mar 31 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29028 * 124.91673 * 2 1 4 4 C 1.31789 * 117.12267 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74699 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46547 * 275.01987 * 5 4 3 7 7 C 1.46904 * 110.99534 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47085 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47253 * 305.00344 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99751 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99848 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00136 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46844 * 90.00277 * 19 17 15 21 21 H 1.48497 * 109.47088 * 210.00471 * 19 17 15 22 22 H 1.48503 * 109.46723 * 330.00198 * 19 17 15 23 23 C 1.33633 * 114.50110 * 0.22666 * 4 3 2 24 24 S 1.70981 * 124.91513 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47428 * 90.00182 * 1 2 3 26 26 H 1.09000 * 109.47032 * 210.00348 * 1 2 3 27 27 H 1.09002 * 109.47291 * 329.99869 * 1 2 3 28 28 H 1.08997 * 109.46893 * 155.02119 * 5 4 3 29 29 H 1.08997 * 109.46991 * 35.02003 * 5 4 3 30 30 H 1.00901 * 111.00190 * 56.04996 * 6 5 4 31 31 H 1.08996 * 109.47355 * 59.99871 * 7 6 5 32 32 H 1.09001 * 109.46826 * 299.99768 * 7 6 5 33 33 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 34 34 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 35 35 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 36 36 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 37 37 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 38 38 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 39 39 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 40 40 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 41 41 H 0.97003 * 119.99947 * 179.97438 * 18 17 15 42 42 H 1.08002 * 126.04046 * 179.76920 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 7 4.7563 2.4751 -1.3811 7 6 5.7086 3.5929 -1.4208 8 6 5.9171 4.0340 -2.8710 9 1 6.2265 3.1777 -3.4703 10 8 4.6939 4.5608 -3.3891 11 6 7.0005 5.1129 -2.9251 12 7 7.2846 5.4515 -4.3260 13 6 8.0191 6.7201 -4.4225 14 6 8.0183 4.3667 -4.9915 15 6 8.0771 4.6352 -6.4733 16 1 7.6160 5.5230 -6.8798 17 6 8.7206 3.7478 -7.3096 18 7 9.2826 2.6668 -6.8143 19 14 8.7941 4.0809 -9.1462 20 1 10.0115 4.8723 -9.4573 21 1 8.8404 2.7917 -9.8817 22 1 7.5888 4.8436 -9.5595 23 6 3.9354 -0.4006 -0.0058 24 16 2.4856 -1.4020 0.0006 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 5.4750 1.6952 0.4325 29 1 4.1276 2.8478 0.5886 30 1 3.8861 2.7250 -1.8267 31 1 6.6609 3.2741 -0.9972 32 1 5.3140 4.4271 -0.8408 33 1 4.3584 5.3266 -2.9033 34 1 7.9081 4.7406 -2.4500 35 1 6.6539 6.0026 -2.3994 36 1 8.0728 7.0305 -5.4659 37 1 9.0274 6.5869 -4.0306 38 1 7.5018 7.4843 -3.8423 39 1 9.0308 4.3139 -4.5914 40 1 7.5076 3.4203 -4.8137 41 1 9.7349 2.0423 -7.4028 42 1 4.9545 -0.7582 -0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591729245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:31 Heat of formation + Delta-G solvation = -1.868248 kcal Electronic energy + Delta-G solvation = -21529.579039 eV Core-core repulsion = 18250.475584 eV Total energy + Delta-G solvation = -3279.103455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10529 -38.17366 -35.98526 -34.91860 -32.54896 -32.42169 -29.99046 -28.56739 -27.33651 -26.79276 -24.71661 -23.27084 -22.51733 -21.47820 -20.02540 -19.86348 -17.81094 -16.67514 -16.27636 -15.92918 -15.43958 -15.30540 -14.76425 -14.67970 -14.38081 -14.19986 -13.92928 -13.63854 -13.35160 -13.25259 -12.74316 -12.54416 -12.35432 -12.18232 -12.00899 -11.89575 -11.42880 -11.33563 -11.11719 -10.90090 -10.66037 -10.62271 -10.30603 -9.86313 -9.70624 -9.58880 -9.58224 -9.10209 -8.94892 -8.41454 -8.36682 -7.16286 -5.96684 -3.96992 0.52905 1.16419 1.53205 2.54640 3.36133 3.42150 3.47579 3.80315 4.22038 4.48781 4.70181 4.78751 4.89933 4.99145 5.05735 5.12523 5.14510 5.33393 5.35158 5.38298 5.45396 5.54901 5.60079 5.64964 5.76255 5.83082 5.97652 6.07329 6.11293 6.37875 6.57920 6.73938 6.94025 7.32973 7.36120 7.37595 7.57229 7.85405 8.10445 8.16491 8.25977 8.60972 9.10071 9.66591 11.14439 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002721 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.646982 B =10287.242000 C =11071.352966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.470 5.470 4 C 0.071 3.929 5 C 0.135 3.865 6 N -0.678 5.678 7 C 0.031 3.969 8 C 0.114 3.886 9 H 0.114 0.886 10 O -0.542 6.542 11 C 0.028 3.972 12 N -0.532 5.532 13 C 0.041 3.959 14 C 0.191 3.809 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.235 4.235 24 S 0.111 5.889 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.353 0.647 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.359 0.641 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.011 0.989 38 H 0.041 0.959 39 H -0.011 1.011 40 H 0.033 0.967 41 H 0.260 0.740 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -4.883 18.578 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.232 4.232 3 N -0.185 5.185 4 C -0.061 4.061 5 C 0.003 3.997 6 N -0.311 5.311 7 C -0.099 4.099 8 C 0.054 3.946 9 H 0.132 0.868 10 O -0.345 6.345 11 C -0.102 4.102 12 N -0.257 5.257 13 C -0.107 4.107 14 C 0.067 3.933 15 C -0.542 4.542 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.375 4.375 24 S 0.365 5.635 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.173 0.827 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.204 0.796 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.006 0.994 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.172 -6.515 17.719 23.606 hybrid contribution 1.126 1.735 0.181 2.076 sum -13.046 -4.781 17.899 22.659 Atomic orbital electron populations 1.20436 0.85196 1.04042 1.04041 1.26993 1.01730 0.90976 1.03543 1.66077 1.04601 1.31770 1.16081 1.20118 0.89735 0.94325 1.01908 1.20398 0.95482 0.92796 0.91023 1.60391 1.17290 1.38199 1.15206 1.22705 0.97027 0.91733 0.98453 1.22023 0.84145 0.96506 0.91898 0.86819 1.86710 1.39441 1.49337 1.59028 1.22661 0.97579 0.97730 0.92251 1.62052 1.48209 1.04628 1.10762 1.22184 0.94794 0.91626 1.02141 1.19801 0.90612 0.88945 0.93991 1.21147 1.33874 1.07610 0.91564 0.91940 1.24986 0.95644 0.95105 0.98963 1.69958 1.36933 1.11788 1.35276 0.86506 0.78331 0.77519 0.85129 1.20845 1.21269 1.19746 1.26839 1.03159 0.95636 1.11852 1.83948 0.98121 1.12904 1.68514 0.89449 0.90191 0.89344 0.89467 0.93662 0.82742 0.90195 0.95180 0.79597 0.95063 0.92242 0.90962 0.97018 0.93986 0.99376 0.94895 0.93005 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.00 0.38 -0.13 16 2 C 0.05 0.47 7.39 -13.46 -0.10 0.37 16 3 N -0.47 -5.88 10.53 -8.06 -0.08 -5.96 16 4 C 0.07 0.86 6.25 -84.22 -0.53 0.33 16 5 C 0.13 1.55 6.12 -4.97 -0.03 1.52 16 6 N -0.68 -9.22 6.49 -115.06 -0.75 -9.96 16 7 C 0.03 0.41 5.36 -3.82 -0.02 0.38 16 8 C 0.11 1.92 3.26 -26.73 -0.09 1.84 16 9 H 0.11 2.37 6.46 -51.93 -0.34 2.03 16 10 O -0.54 -9.32 12.81 -35.23 -0.45 -9.77 16 11 C 0.03 0.49 4.61 -3.83 -0.02 0.47 16 12 N -0.53 -11.76 4.66 -244.37 -1.14 -12.90 16 13 C 0.04 0.82 9.32 60.07 0.56 1.38 16 14 C 0.19 5.12 4.57 -4.97 -0.02 5.10 16 15 C -0.50 -14.59 8.58 -34.44 -0.30 -14.89 16 16 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.24 -2.52 11.12 29.12 0.32 -2.20 16 24 S 0.11 1.01 23.18 -107.50 -2.49 -1.48 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.35 5.15 8.28 -39.29 -0.33 4.83 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.36 4.65 9.05 45.56 0.41 5.06 16 34 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 36 H 0.07 1.52 7.02 -51.93 -0.36 1.16 16 37 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 38 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 39 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 40 H 0.03 0.94 6.34 -51.93 -0.33 0.61 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -33.53 361.76 -9.58 -43.11 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.90 Total: 5.25 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.06 Total: -4.36 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -1.23 Total: -55.42 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.45 Total: -9.77 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.53 -9.58 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591729245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.240 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds