Wall clock time and date at job start Tue Mar 31 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29028 * 124.91673 * 2 1 4 4 C 1.31789 * 117.12267 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74699 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46547 * 275.01987 * 5 4 3 7 7 C 1.46904 * 110.99534 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47085 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47253 * 305.00344 * 8 7 6 10 10 O 1.42900 * 109.47194 * 64.99751 * 8 7 6 11 11 C 1.52998 * 109.47107 * 184.99848 * 8 7 6 12 12 N 1.46899 * 109.46858 * 175.04575 * 11 8 7 13 13 C 1.46903 * 110.99991 * 163.94840 * 12 11 8 14 14 C 1.46902 * 111.00138 * 287.89426 * 12 11 8 15 15 C 1.50702 * 109.47206 * 170.00004 * 14 12 11 16 16 H 1.07990 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00136 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99737 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46844 * 90.00277 * 19 17 15 21 21 H 1.48497 * 109.47088 * 210.00471 * 19 17 15 22 22 H 1.48503 * 109.46723 * 330.00198 * 19 17 15 23 23 C 1.33633 * 114.50110 * 0.22666 * 4 3 2 24 24 S 1.70981 * 124.91513 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47428 * 90.00182 * 1 2 3 26 26 H 1.09000 * 109.47032 * 210.00348 * 1 2 3 27 27 H 1.09002 * 109.47291 * 329.99869 * 1 2 3 28 28 H 1.08997 * 109.46893 * 155.02119 * 5 4 3 29 29 H 1.08997 * 109.46991 * 35.02003 * 5 4 3 30 30 H 1.00901 * 111.00190 * 56.04996 * 6 5 4 31 31 H 1.08996 * 109.47355 * 59.99871 * 7 6 5 32 32 H 1.09001 * 109.46826 * 299.99768 * 7 6 5 33 33 H 0.96698 * 114.00266 * 60.00042 * 10 8 7 34 34 H 1.08997 * 109.47560 * 55.04389 * 11 8 7 35 35 H 1.08998 * 109.46907 * 295.04026 * 11 8 7 36 36 H 1.08998 * 109.47439 * 189.27288 * 13 12 11 37 37 H 1.08994 * 109.47470 * 69.26701 * 13 12 11 38 38 H 1.09004 * 109.46549 * 309.26905 * 13 12 11 39 39 H 1.08997 * 109.47475 * 290.00611 * 14 12 11 40 40 H 1.09000 * 109.46537 * 50.00068 * 14 12 11 41 41 H 0.97003 * 119.99947 * 179.97438 * 18 17 15 42 42 H 1.08002 * 126.04046 * 179.76920 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 7 4.7563 2.4751 -1.3811 7 6 5.7086 3.5929 -1.4208 8 6 5.9171 4.0340 -2.8710 9 1 6.2265 3.1777 -3.4703 10 8 4.6939 4.5608 -3.3891 11 6 7.0005 5.1129 -2.9251 12 7 7.2846 5.4515 -4.3260 13 6 8.0191 6.7201 -4.4225 14 6 8.0183 4.3667 -4.9915 15 6 8.0771 4.6352 -6.4733 16 1 7.6160 5.5230 -6.8798 17 6 8.7206 3.7478 -7.3096 18 7 9.2826 2.6668 -6.8143 19 14 8.7941 4.0809 -9.1462 20 1 10.0115 4.8723 -9.4573 21 1 8.8404 2.7917 -9.8817 22 1 7.5888 4.8436 -9.5595 23 6 3.9354 -0.4006 -0.0058 24 16 2.4856 -1.4020 0.0006 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 5.4750 1.6952 0.4325 29 1 4.1276 2.8478 0.5886 30 1 3.8861 2.7250 -1.8267 31 1 6.6609 3.2741 -0.9972 32 1 5.3140 4.4271 -0.8408 33 1 4.3584 5.3266 -2.9033 34 1 7.9081 4.7406 -2.4500 35 1 6.6539 6.0026 -2.3994 36 1 8.0728 7.0305 -5.4659 37 1 9.0274 6.5869 -4.0306 38 1 7.5018 7.4843 -3.8423 39 1 9.0308 4.3139 -4.5914 40 1 7.5076 3.4203 -4.8137 41 1 9.7349 2.0423 -7.4028 42 1 4.9545 -0.7582 -0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591729245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:31 Heat of formation + Delta-G solvation = -29.885505 kcal Electronic energy + Delta-G solvation = -21530.793959 eV Core-core repulsion = 18250.475584 eV Total energy + Delta-G solvation = -3280.318374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91680 -39.56281 -37.47538 -36.12786 -34.60803 -33.31699 -31.23396 -29.51433 -29.21905 -27.94076 -26.16995 -24.89321 -23.37541 -22.82880 -21.70438 -20.68218 -18.63671 -18.59463 -17.62387 -17.27875 -16.61655 -16.51509 -16.20913 -16.01999 -15.59083 -15.48632 -15.07961 -14.89177 -14.60456 -14.32570 -13.99754 -13.86675 -13.37911 -13.21860 -13.16204 -13.05232 -12.91181 -12.80984 -12.59573 -12.54168 -12.32103 -12.26608 -12.16250 -11.51341 -11.32171 -10.81556 -10.64263 -10.60168 -10.36142 -9.74981 -9.38904 -8.95057 -8.20031 -6.29510 -0.24631 0.42990 0.75526 1.39287 1.41730 1.53355 1.70536 2.40486 2.98259 3.12198 3.17687 3.50132 3.68606 3.93982 3.98067 4.11942 4.19489 4.31616 4.36159 4.42975 4.51113 4.56768 4.60115 4.62352 4.67271 4.76686 4.78428 4.83415 5.01621 5.07638 5.12114 5.23507 5.25639 5.31684 5.65068 5.95659 6.07403 6.28901 6.35218 6.65461 6.78072 6.86222 7.03063 7.39713 8.91188 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002721 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.646982 B =10287.242000 C =11071.352966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.035 3.965 3 N -0.501 5.501 4 C 0.051 3.949 5 C 0.139 3.861 6 N -0.693 5.693 7 C 0.045 3.955 8 C 0.123 3.877 9 H 0.064 0.936 10 O -0.562 6.562 11 C 0.028 3.972 12 N -0.545 5.545 13 C 0.043 3.957 14 C 0.209 3.791 15 C -0.523 4.523 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.252 4.252 24 S 0.148 5.852 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.345 0.655 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.379 0.621 34 H 0.030 0.970 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.008 0.992 38 H 0.083 0.917 39 H -0.040 1.040 40 H 0.004 0.996 41 H 0.264 0.736 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 -4.236 19.172 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.242 4.242 3 N -0.218 5.218 4 C -0.081 4.081 5 C 0.008 3.992 6 N -0.325 5.325 7 C -0.085 4.085 8 C 0.063 3.937 9 H 0.082 0.918 10 O -0.368 6.368 11 C -0.101 4.101 12 N -0.269 5.269 13 C -0.106 4.106 14 C 0.083 3.917 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.392 4.392 24 S 0.403 5.597 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.227 0.773 34 H 0.048 0.952 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.102 0.898 39 H -0.023 1.023 40 H 0.022 0.978 41 H 0.073 0.927 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.222 -5.849 18.343 24.544 hybrid contribution 1.380 1.503 0.052 2.042 sum -13.842 -4.346 18.396 23.428 Atomic orbital electron populations 1.20606 0.82943 1.05345 1.04870 1.27637 1.03250 0.91047 1.02310 1.66109 1.04961 1.33087 1.17620 1.20263 0.90005 0.94919 1.02886 1.20410 0.96115 0.92936 0.89747 1.60369 1.16927 1.38487 1.16727 1.22510 0.97496 0.92651 0.95864 1.21740 0.83946 0.94684 0.93334 0.91822 1.86655 1.39414 1.50600 1.60116 1.22782 0.97804 0.99629 0.89864 1.61943 1.47434 1.04016 1.13535 1.22207 0.95112 0.91415 1.01829 1.19400 0.89094 0.89570 0.93682 1.21475 1.34047 1.07662 0.92957 0.92196 1.25931 0.95042 0.94736 1.04145 1.70087 1.37560 1.12713 1.37164 0.85389 0.78811 0.77648 0.78823 1.19534 1.20683 1.19107 1.27104 1.04525 0.95895 1.11646 1.83757 0.96726 1.11682 1.67582 0.88708 0.87789 0.89149 0.88288 0.93216 0.83634 0.89647 0.92403 0.77278 0.95151 0.88325 0.92774 0.97332 0.89828 1.02268 0.97767 0.92728 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.46 71.23 0.75 -0.15 16 2 C 0.04 0.68 7.39 88.52 0.65 1.34 16 3 N -0.50 -12.33 10.53 -179.40 -1.89 -14.22 16 4 C 0.05 1.21 6.25 41.52 0.26 1.47 16 5 C 0.14 3.10 6.12 85.56 0.52 3.63 16 6 N -0.69 -18.69 6.49 -517.93 -3.36 -22.05 16 7 C 0.04 1.12 5.36 86.30 0.46 1.59 16 8 C 0.12 4.16 3.26 30.59 0.10 4.26 16 9 H 0.06 2.82 6.46 -2.39 -0.02 2.80 16 10 O -0.56 -19.04 12.81 -148.98 -1.91 -20.95 16 11 C 0.03 0.96 4.61 86.30 0.40 1.36 16 12 N -0.55 -24.12 4.66 -927.06 -4.32 -28.44 16 13 C 0.04 1.64 9.32 127.69 1.19 2.83 16 14 C 0.21 11.59 4.57 85.56 0.39 11.98 16 15 C -0.52 -31.02 8.58 25.60 0.22 -30.80 16 16 H 0.06 3.50 7.10 -2.92 -0.02 3.48 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 19 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 C -0.25 -5.28 11.12 66.77 0.74 -4.53 16 24 S 0.15 2.53 23.18 -56.49 -1.31 1.22 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.91 8.10 -2.39 -0.02 1.89 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.35 10.12 8.28 -89.69 -0.74 9.38 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.38 9.10 9.05 -74.06 -0.67 8.43 16 34 H 0.03 1.06 8.05 -2.39 -0.02 1.04 16 35 H 0.10 2.61 7.82 -2.39 -0.02 2.59 16 36 H 0.05 2.25 7.02 -2.39 -0.02 2.24 16 37 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 38 H 0.08 2.51 7.88 -2.39 -0.02 2.49 16 39 H -0.04 -2.41 8.07 -2.39 -0.02 -2.43 16 40 H 0.00 0.26 6.34 -2.39 -0.02 0.25 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -74.38 361.76 -4.71 -79.09 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.39 Total: 21.84 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 6.15 Total: -6.60 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -9.28 Total: -122.55 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.91 Total: -20.95 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -74.38 -4.71 -79.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591729245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.206 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds