Wall clock time and date at job start Tue Mar 31 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53010 * 109.46966 * 270.07336 * 3 2 1 5 5 N 1.46491 * 109.47041 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00054 * 265.13498 * 5 4 3 7 7 C 1.50703 * 109.47151 * 263.37407 * 6 5 4 8 8 H 1.08000 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99639 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00491 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99351 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47512 * 60.00290 * 11 9 7 13 13 H 1.48498 * 109.46904 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47443 * 299.99806 * 11 9 7 15 15 C 1.34778 * 120.00277 * 85.13551 * 5 4 3 16 16 O 1.21549 * 119.99542 * 3.78996 * 15 5 4 17 17 C 1.47884 * 119.99831 * 183.79190 * 15 5 4 18 18 C 1.39900 * 125.68987 * 173.66275 * 17 15 5 19 19 C 1.38577 * 107.59072 * 180.02562 * 18 17 15 20 20 N 1.34122 * 132.33756 * 179.97438 * 19 18 17 21 21 C 1.31134 * 120.83761 * 179.68500 * 20 19 18 22 22 C 1.40340 * 120.29506 * 0.62733 * 21 20 19 23 23 C 1.35448 * 119.46721 * 359.40190 * 22 21 20 24 24 N 1.36675 * 119.14073 * 0.27642 * 23 22 21 25 25 N 1.32371 * 125.69511 * 353.69802 * 17 15 5 26 26 H 1.08995 * 109.46922 * 150.08024 * 3 2 1 27 27 H 1.08996 * 109.47269 * 30.07507 * 3 2 1 28 28 H 1.08994 * 109.46656 * 60.00029 * 4 3 2 29 29 H 1.09004 * 109.47019 * 300.00418 * 4 3 2 30 30 H 1.09004 * 109.47006 * 23.36962 * 6 5 4 31 31 H 1.08997 * 109.47774 * 143.37073 * 6 5 4 32 32 H 0.97002 * 120.00198 * 179.97438 * 10 9 7 33 33 H 1.08003 * 126.20673 * 0.02562 * 18 17 15 34 34 H 1.07996 * 119.85062 * 180.32714 * 21 20 19 35 35 H 1.08000 * 120.26607 * 179.67554 * 22 21 20 36 36 H 1.08002 * 120.43434 * 180.29769 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0010 1.4426 5 7 4.5829 0.0003 1.4426 6 6 5.3165 -1.2634 1.5484 7 6 5.7099 -1.4972 2.9843 8 1 5.4407 -0.7763 3.7421 9 6 6.4134 -2.6314 3.3304 10 7 6.7407 -3.5094 2.4077 11 14 6.9015 -2.9208 5.1101 12 1 5.6813 -2.9840 5.9541 13 1 7.6450 -4.2017 5.2174 14 1 7.7668 -1.8065 5.5736 15 6 5.2558 1.1640 1.3453 16 8 4.6491 2.2171 1.3270 17 6 6.7323 1.1595 1.2608 18 6 7.5401 2.2786 1.0322 19 6 8.8578 1.8496 1.0253 20 7 10.0184 2.4991 0.8520 21 6 11.1610 1.8572 0.8963 22 6 11.1864 0.4710 1.1138 23 6 10.0214 -0.1972 1.2900 24 7 8.8438 0.4951 1.2460 25 7 7.5099 0.0959 1.3882 26 1 2.9709 0.8915 -0.5126 27 1 2.9717 -0.8884 -0.5150 28 1 2.7550 -0.8917 1.9552 29 1 2.7542 0.8882 1.9576 30 1 4.6819 -2.0815 1.2078 31 1 6.2124 -1.2165 0.9293 32 1 7.2359 -4.3071 2.6511 33 1 7.1988 3.2930 0.8874 34 1 12.0864 2.3970 0.7598 35 1 12.1274 -0.0580 1.1449 36 1 10.0230 -1.2633 1.4632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591851900.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:41 Heat of formation + Delta-G solvation = 109.042312 kcal Electronic energy + Delta-G solvation = -23501.103191 eV Core-core repulsion = 19987.824884 eV Total energy + Delta-G solvation = -3513.278307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.19236 -40.86512 -38.69243 -37.90500 -36.83560 -34.90961 -34.63911 -32.93089 -31.65759 -30.04040 -28.97306 -26.84326 -25.12735 -25.04354 -24.21108 -22.73673 -20.24014 -19.04479 -18.89100 -18.59242 -18.27172 -17.42167 -17.04511 -16.92044 -16.57003 -16.18056 -15.81720 -15.65370 -15.28037 -14.84680 -14.52167 -14.32050 -14.20070 -13.77418 -13.65204 -13.61418 -13.43829 -13.36189 -12.95098 -12.76047 -12.70445 -12.17139 -12.15523 -11.89663 -11.71410 -11.64588 -11.19015 -10.71777 -10.50216 -10.33575 -9.59487 -8.89794 -8.08198 -6.14264 -0.36375 -0.07926 0.88146 1.13923 1.38963 1.41856 1.47492 1.64897 1.78289 2.12069 2.33799 2.46896 2.55730 2.95805 3.08631 3.21265 3.25015 3.68063 3.79375 4.09786 4.10920 4.18366 4.38160 4.49442 4.52434 4.66741 4.75232 4.83508 4.92810 5.01611 5.20659 5.26020 5.47601 5.55539 5.82322 5.86010 6.20921 6.32492 6.44994 6.54308 6.70605 6.90573 7.15563 7.50748 8.98554 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.006056 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.874633 B = 4622.335117 C = 6584.896697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.247 3.753 3 C -0.031 4.031 4 C 0.122 3.878 5 N -0.579 5.579 6 C 0.242 3.758 7 C -0.520 4.520 8 H 0.036 0.964 9 C 0.039 3.961 10 N -0.909 5.909 11 Si 0.933 3.067 12 H -0.278 1.278 13 H -0.278 1.278 14 H -0.286 1.286 15 C 0.596 3.404 16 O -0.564 6.564 17 C 0.047 3.953 18 C -0.235 4.235 19 C 0.234 3.766 20 N -0.491 5.491 21 C 0.187 3.813 22 C -0.197 4.197 23 C 0.134 3.866 24 N -0.322 5.322 25 N -0.231 5.231 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.263 0.737 33 H 0.167 0.833 34 H 0.230 0.770 35 H 0.217 0.783 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 4.765 -5.039 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.070 4.070 3 C -0.072 4.072 4 C -0.002 4.002 5 N -0.308 5.308 6 C 0.121 3.879 7 C -0.559 4.559 8 H 0.054 0.946 9 C -0.161 4.161 10 N -0.548 5.548 11 Si 0.760 3.240 12 H -0.204 1.204 13 H -0.203 1.203 14 H -0.212 1.212 15 C 0.382 3.618 16 O -0.443 6.443 17 C -0.113 4.113 18 C -0.267 4.267 19 C 0.008 3.992 20 N -0.204 5.204 21 C 0.003 3.997 22 C -0.220 4.220 23 C 0.001 3.999 24 N -0.095 5.095 25 N -0.059 5.059 26 H 0.139 0.861 27 H 0.151 0.849 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.185 0.815 34 H 0.246 0.754 35 H 0.234 0.766 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.694 4.740 -4.997 11.891 hybrid contribution 0.530 -0.475 1.235 1.426 sum 10.224 4.265 -3.762 11.699 Atomic orbital electron populations 1.81208 1.14186 1.11140 1.09959 1.29103 0.94935 0.91234 0.91773 1.19688 0.80319 1.07665 0.99530 1.21339 0.78925 1.04519 0.95466 1.48084 1.06668 1.07682 1.68326 1.19617 0.92435 0.79004 0.96814 1.21351 1.35376 1.05400 0.93753 0.94565 1.25210 0.95683 0.95795 0.99419 1.69964 1.40055 1.11220 1.33603 0.86025 0.78348 0.77073 0.82506 1.20380 1.20297 1.21247 1.17068 0.84181 0.83845 0.76701 1.90702 1.68588 1.31572 1.53455 1.22101 0.95086 0.92377 1.01705 1.20890 0.87854 1.00215 1.17776 1.20650 0.95138 0.81645 1.01747 1.68307 0.96748 1.37358 1.17954 1.24375 0.96382 0.92406 0.86504 1.22436 0.98730 0.96143 1.04704 1.22779 0.81459 1.00863 0.94758 1.47880 1.07501 1.08673 1.45455 1.79225 0.83228 1.18518 1.24966 0.86106 0.84937 0.88546 0.90079 0.94677 0.92161 0.92733 0.81518 0.75389 0.76583 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.80 18.54 20.01 0.37 -15.43 16 2 C 0.25 6.76 15.43 89.44 1.38 8.14 16 3 C -0.03 -0.76 6.00 28.79 0.17 -0.58 16 4 C 0.12 3.80 5.32 86.38 0.46 4.26 16 5 N -0.58 -22.54 2.48 -829.51 -2.06 -24.60 16 6 C 0.24 10.83 4.74 85.63 0.41 11.24 16 7 C -0.52 -26.23 8.35 25.60 0.21 -26.01 16 8 H 0.04 1.93 7.81 -2.91 -0.02 1.91 16 9 C 0.04 1.99 5.46 84.66 0.46 2.45 16 10 N -0.91 -47.03 13.29 21.45 0.28 -46.75 16 11 Si 0.93 41.31 29.54 68.60 2.03 43.34 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.60 24.70 7.59 86.80 0.66 25.36 16 16 O -0.56 -24.08 16.52 -3.87 -0.06 -24.14 16 17 C 0.05 1.97 6.75 42.02 0.28 2.25 16 18 C -0.24 -8.93 10.66 22.75 0.24 -8.69 16 19 C 0.23 8.07 7.90 133.00 1.05 9.12 16 20 N -0.49 -13.34 10.48 -192.59 -2.02 -15.36 16 21 C 0.19 2.97 11.27 85.31 0.96 3.93 16 22 C -0.20 -2.83 10.05 22.14 0.22 -2.61 16 23 C 0.13 3.35 11.30 83.29 0.94 4.29 16 24 N -0.32 -11.38 3.90 -192.51 -0.75 -12.13 16 25 N -0.23 -9.87 8.39 -48.78 -0.41 -10.27 16 26 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.10 2.94 8.04 -2.39 -0.02 2.92 16 29 H 0.08 2.59 7.52 -2.39 -0.02 2.57 16 30 H 0.04 1.59 8.02 -2.38 -0.02 1.57 16 31 H 0.06 2.90 5.35 -2.39 -0.01 2.89 16 32 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 33 H 0.17 5.90 8.06 -2.91 -0.02 5.87 16 34 H 0.23 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 36 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -71.48 328.83 5.96 -65.52 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.13 Total: 6.68 kcal Atomic # 6 Polarization: 25.69 SS G_CDS: 7.46 Total: 33.15 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -4.58 Total: -124.54 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -71.48 5.96 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591851900.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.559 kcal (2) G-P(sol) polarization free energy of solvation -71.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds