Wall clock time and date at job start Tue Mar 31 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47346 * 269.99979 * 3 2 1 5 5 H 1.48497 * 109.47398 * 30.00314 * 3 2 1 6 6 H 1.48500 * 109.46929 * 150.00024 * 3 2 1 7 7 C 1.39906 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99942 * 193.22857 * 7 2 1 9 9 C 1.41154 * 119.99688 * 13.22685 * 7 2 1 10 10 C 1.40863 * 120.16379 * 27.36572 * 9 7 2 11 11 C 1.36369 * 119.82974 * 179.72228 * 10 9 7 12 12 C 1.39485 * 120.16656 * 0.23091 * 11 10 9 13 13 N 1.39243 * 119.83295 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00254 * 35.76980 * 13 12 11 15 15 O 1.21286 * 120.00070 * 355.40517 * 14 13 12 16 16 C 1.50703 * 120.00403 * 175.39627 * 14 13 12 17 17 N 1.46503 * 115.54661 * 59.32100 * 16 14 13 18 18 C 1.34599 * 126.43981 * 299.48236 * 17 16 14 19 19 N 1.31072 * 106.67867 * 179.87497 * 18 17 16 20 20 N 1.28848 * 107.98720 * 0.38786 * 19 18 17 21 21 N 1.28735 * 109.39631 * 359.75107 * 20 19 18 22 22 C 1.53000 * 117.50100 * 273.65816 * 16 14 13 23 23 C 1.52999 * 117.50218 * 204.99489 * 16 14 13 24 24 C 1.39478 * 120.33435 * 0.04550 * 12 11 10 25 25 C 1.36372 * 120.16984 * 359.95002 * 24 12 11 26 26 H 0.96993 * 120.00193 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.09077 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.92112 * 180.25601 * 11 10 9 29 29 H 0.97006 * 119.99806 * 215.77299 * 13 12 11 30 30 H 1.07996 * 126.65796 * 0.02562 * 18 17 16 31 31 H 1.09002 * 117.50021 * 359.97438 * 22 16 14 32 32 H 1.08997 * 117.50063 * 145.01854 * 22 16 14 33 33 H 1.08999 * 117.49408 * 214.98074 * 23 16 14 34 34 H 1.09002 * 117.49467 * 359.97438 * 23 16 14 35 35 H 1.08000 * 119.91709 * 179.97438 * 24 12 11 36 36 H 1.07999 * 120.09133 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4403 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0668 -1.2240 0.2135 9 6 1.3306 -2.4177 -0.2808 10 6 0.1775 -2.4101 -1.0897 11 6 -0.4686 -3.5801 -1.3608 12 6 0.0069 -4.7815 -0.8353 13 7 -0.6579 -5.9721 -1.1169 14 6 -1.2208 -6.1596 -2.3270 15 8 -1.2211 -5.2610 -3.1416 16 6 -1.8496 -7.4860 -2.6682 17 7 -2.9465 -7.9088 -1.7939 18 6 -2.8723 -8.1304 -0.4684 19 7 -4.0718 -8.4874 -0.0790 20 7 -4.8406 -8.4932 -1.1130 21 7 -4.1637 -8.1440 -2.1509 22 6 -0.9368 -8.5760 -3.2338 23 6 -1.9388 -7.8659 -4.1476 24 6 1.1447 -4.7961 -0.0287 25 6 1.8016 -3.6342 0.2510 26 1 -0.4850 0.8400 0.0004 27 1 -0.1917 -1.4808 -1.4977 28 1 -1.3505 -3.5765 -1.9842 29 1 -0.7160 -6.6665 -0.4421 30 1 -1.9953 -8.0307 0.1539 31 1 0.1184 -8.3336 -3.3595 32 1 -1.1527 -9.6075 -2.9557 33 1 -2.8134 -8.4306 -4.4703 34 1 -1.5430 -7.1562 -4.8742 35 1 1.5068 -5.7301 0.3750 36 1 2.6827 -3.6471 0.8753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596670107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:41 Heat of formation + Delta-G solvation = 144.780862 kcal Electronic energy + Delta-G solvation = -23134.745248 eV Core-core repulsion = 19623.016681 eV Total energy + Delta-G solvation = -3511.728567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.38819 -40.46227 -38.15792 -36.93907 -34.86014 -33.91585 -33.21409 -32.43805 -29.71593 -29.28601 -26.40644 -25.03942 -24.13589 -23.27395 -22.74006 -21.61079 -20.99898 -20.23291 -18.51202 -17.47873 -17.35082 -16.82907 -16.40247 -15.93671 -15.40616 -15.16505 -14.53382 -14.10229 -14.01548 -13.46350 -13.20687 -12.83974 -12.53796 -12.26872 -12.16255 -12.05795 -11.96071 -11.67070 -11.52632 -11.28893 -11.25015 -11.21668 -10.97110 -10.79735 -10.57916 -10.08854 -9.89156 -9.68010 -9.29466 -9.13445 -7.71155 -7.20435 -6.85949 -4.47790 0.97395 1.35416 2.06423 2.25211 2.66360 2.88410 2.92586 2.99655 3.01909 3.03932 3.23615 3.80731 3.83745 3.93412 4.11177 4.35764 4.49403 4.53921 4.94062 5.01823 5.15925 5.38234 5.43519 5.53000 5.54129 5.90184 5.94802 6.20215 6.46002 6.72503 6.86992 6.97949 7.08374 7.37274 7.45057 7.68810 7.89354 7.90418 8.11600 8.28552 8.40063 8.48390 8.73260 8.80971 10.06380 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.003328 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.224453 B = 8412.344927 C = 8586.678984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.110 3.890 10 C -0.153 4.153 11 C -0.083 4.083 12 C -0.024 4.024 13 N -0.631 5.631 14 C 0.533 3.467 15 O -0.496 6.496 16 C 0.043 3.957 17 N -0.271 5.271 18 C 0.164 3.836 19 N -0.301 5.301 20 N -0.076 5.076 21 N -0.084 5.084 22 C -0.142 4.142 23 C -0.115 4.115 24 C -0.095 4.095 25 C -0.214 4.214 26 H 0.283 0.717 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.390 0.610 30 H 0.230 0.770 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -13.420 -3.661 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.107 3.893 10 C -0.173 4.173 11 C -0.103 4.103 12 C -0.116 4.116 13 N -0.274 5.274 14 C 0.314 3.686 15 O -0.369 6.369 16 C -0.046 4.046 17 N -0.073 5.073 18 C -0.134 4.134 19 N -0.149 5.149 20 N -0.070 5.070 21 N -0.070 5.070 22 C -0.181 4.181 23 C -0.152 4.152 24 C -0.115 4.115 25 C -0.234 4.234 26 H 0.094 0.906 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.224 0.776 30 H 0.247 0.753 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.189 -12.879 -4.417 13.667 hybrid contribution 1.233 0.674 0.666 1.555 sum 0.044 -12.205 -3.751 12.769 Atomic orbital electron populations 1.69808 1.07584 1.29521 1.34576 1.25964 0.94842 1.01533 0.92260 0.86228 0.80358 0.80268 0.79423 1.19174 1.20184 1.18533 1.19623 0.96738 0.90771 1.41185 0.90169 1.17719 0.91417 0.92197 0.87959 1.21036 0.98829 0.96596 1.00875 1.20504 0.99110 0.91307 0.99340 1.17113 0.98581 0.83715 1.12155 1.42894 1.53636 1.18340 1.12513 1.18821 0.80685 0.85944 0.83135 1.90785 1.57377 1.40227 1.48491 1.21665 0.90769 0.96958 0.95243 1.47877 1.08221 1.43230 1.08010 1.27645 1.00780 1.00929 0.84093 1.75052 0.99258 1.18246 1.22295 1.78665 1.21958 1.14778 0.91594 1.78923 0.89102 1.15625 1.23306 1.23717 0.98391 0.96077 0.99871 1.23467 1.01588 1.01676 0.88498 1.20019 0.94073 0.97303 1.00154 1.20587 1.03316 0.92805 1.06667 0.90608 0.85945 0.87789 0.77552 0.75345 0.85389 0.86621 0.85952 0.85045 0.88959 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.85 10.87 55.55 0.60 -19.25 16 2 C 0.07 1.75 5.21 -17.34 -0.09 1.66 16 3 Si 0.91 17.99 29.58 -169.99 -5.03 12.96 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.45 9.05 -37.85 -0.34 -11.79 16 8 H 0.08 1.92 7.88 -52.49 -0.41 1.51 16 9 C 0.11 2.78 5.56 -106.80 -0.59 2.18 16 10 C -0.15 -3.90 8.61 -39.26 -0.34 -4.24 16 11 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 12 C -0.02 -0.48 6.30 -83.57 -0.53 -1.01 16 13 N -0.63 -9.62 5.22 -9.74 -0.05 -9.67 16 14 C 0.53 8.19 7.12 -10.99 -0.08 8.11 16 15 O -0.50 -9.68 13.99 5.55 0.08 -9.60 16 16 C 0.04 0.48 2.74 -132.97 -0.36 0.11 16 17 N -0.27 -3.32 3.53 -50.89 -0.18 -3.50 16 18 C 0.16 1.83 12.08 -90.39 -1.09 0.74 16 19 N -0.30 -4.26 12.36 29.59 0.37 -3.90 16 20 N -0.08 -1.18 13.43 60.35 0.81 -0.37 16 21 N -0.08 -1.21 12.94 60.35 0.78 -0.43 16 22 C -0.14 -1.03 10.16 -26.69 -0.27 -1.30 16 23 C -0.11 -1.04 9.72 -26.69 -0.26 -1.30 16 24 C -0.10 -1.88 9.90 -39.79 -0.39 -2.28 16 25 C -0.21 -4.79 9.74 -39.26 -0.38 -5.17 16 26 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 27 H 0.12 3.27 6.19 -52.49 -0.32 2.94 16 28 H 0.10 2.48 6.25 -52.49 -0.33 2.15 16 29 H 0.39 4.38 6.81 -40.82 -0.28 4.10 16 30 H 0.23 1.52 6.73 -52.49 -0.35 1.17 16 31 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 1.01 8.04 -51.93 -0.42 0.60 16 34 H 0.13 1.22 7.89 -51.93 -0.41 0.81 16 35 H 0.09 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -30.97 318.52 -6.25 -37.22 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.35 Total: 8.30 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -5.08 Total: -16.56 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 2.33 Total: -37.11 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.97 -6.25 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596670107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.997 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds