Wall clock time and date at job start Tue Mar 31 2020 03:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47346 * 269.99979 * 3 2 1 5 5 H 1.48497 * 109.47398 * 30.00314 * 3 2 1 6 6 H 1.48500 * 109.46929 * 150.00024 * 3 2 1 7 7 C 1.39906 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99942 * 193.22857 * 7 2 1 9 9 C 1.41154 * 119.99688 * 13.22685 * 7 2 1 10 10 C 1.40863 * 120.16379 * 27.36572 * 9 7 2 11 11 C 1.36369 * 119.82974 * 179.72228 * 10 9 7 12 12 C 1.39485 * 120.16656 * 0.23091 * 11 10 9 13 13 N 1.39243 * 119.83295 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00254 * 35.76980 * 13 12 11 15 15 O 1.21286 * 120.00070 * 355.40517 * 14 13 12 16 16 C 1.50703 * 120.00403 * 175.39627 * 14 13 12 17 17 N 1.46503 * 115.54661 * 59.32100 * 16 14 13 18 18 C 1.34599 * 126.43981 * 299.48236 * 17 16 14 19 19 N 1.31072 * 106.67867 * 179.87497 * 18 17 16 20 20 N 1.28848 * 107.98720 * 0.38786 * 19 18 17 21 21 N 1.28735 * 109.39631 * 359.75107 * 20 19 18 22 22 C 1.53000 * 117.50100 * 273.65816 * 16 14 13 23 23 C 1.52999 * 117.50218 * 204.99489 * 16 14 13 24 24 C 1.39478 * 120.33435 * 0.04550 * 12 11 10 25 25 C 1.36372 * 120.16984 * 359.95002 * 24 12 11 26 26 H 0.96993 * 120.00193 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.09077 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.92112 * 180.25601 * 11 10 9 29 29 H 0.97006 * 119.99806 * 215.77299 * 13 12 11 30 30 H 1.07996 * 126.65796 * 0.02562 * 18 17 16 31 31 H 1.09002 * 117.50021 * 359.97438 * 22 16 14 32 32 H 1.08997 * 117.50063 * 145.01854 * 22 16 14 33 33 H 1.08999 * 117.49408 * 214.98074 * 23 16 14 34 34 H 1.09002 * 117.49467 * 359.97438 * 23 16 14 35 35 H 1.08000 * 119.91709 * 179.97438 * 24 12 11 36 36 H 1.07999 * 120.09133 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4403 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0668 -1.2240 0.2135 9 6 1.3306 -2.4177 -0.2808 10 6 0.1775 -2.4101 -1.0897 11 6 -0.4686 -3.5801 -1.3608 12 6 0.0069 -4.7815 -0.8353 13 7 -0.6579 -5.9721 -1.1169 14 6 -1.2208 -6.1596 -2.3270 15 8 -1.2211 -5.2610 -3.1416 16 6 -1.8496 -7.4860 -2.6682 17 7 -2.9465 -7.9088 -1.7939 18 6 -2.8723 -8.1304 -0.4684 19 7 -4.0718 -8.4874 -0.0790 20 7 -4.8406 -8.4932 -1.1130 21 7 -4.1637 -8.1440 -2.1509 22 6 -0.9368 -8.5760 -3.2338 23 6 -1.9388 -7.8659 -4.1476 24 6 1.1447 -4.7961 -0.0287 25 6 1.8016 -3.6342 0.2510 26 1 -0.4850 0.8400 0.0004 27 1 -0.1917 -1.4808 -1.4977 28 1 -1.3505 -3.5765 -1.9842 29 1 -0.7160 -6.6665 -0.4421 30 1 -1.9953 -8.0307 0.1539 31 1 0.1184 -8.3336 -3.3595 32 1 -1.1527 -9.6075 -2.9557 33 1 -2.8134 -8.4306 -4.4703 34 1 -1.5430 -7.1562 -4.8742 35 1 1.5068 -5.7301 0.3750 36 1 2.6827 -3.6471 0.8753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596670107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:40 Heat of formation + Delta-G solvation = 125.083535 kcal Electronic energy + Delta-G solvation = -23135.599388 eV Core-core repulsion = 19623.016681 eV Total energy + Delta-G solvation = -3512.582707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.38240 -41.72172 -39.56193 -38.21132 -36.40771 -34.92408 -34.79971 -33.46385 -31.49467 -30.98245 -27.72802 -26.37359 -25.12466 -24.46198 -23.54204 -23.23956 -22.46989 -21.52490 -19.72869 -19.26686 -18.37672 -18.12688 -17.51728 -17.12272 -16.88881 -16.19467 -15.97797 -15.74345 -15.01400 -14.85059 -14.48027 -14.42882 -13.98808 -13.68136 -13.53630 -13.37796 -13.04712 -12.91238 -12.82894 -12.75862 -12.47304 -12.45696 -12.21056 -11.89357 -11.71763 -11.60815 -11.49563 -11.22351 -10.95094 -10.72129 -9.49460 -8.93448 -8.62425 -6.33743 0.00662 0.35307 0.82403 1.05130 1.11950 1.35291 1.38942 1.51406 1.55501 1.87058 2.11907 2.19406 2.72116 2.99984 3.12282 3.35909 3.43694 3.59886 3.70642 4.12735 4.31185 4.40927 4.44008 4.46188 4.48327 4.73400 4.88601 4.92060 5.01905 5.06290 5.10469 5.24805 5.34099 5.64070 5.77877 5.97990 6.07431 6.28660 6.43045 6.64906 6.88885 6.92514 7.09257 7.38695 8.31514 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.003328 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.224453 B = 8412.344927 C = 8586.678984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.030 3.970 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.491 4.491 8 H 0.083 0.917 9 C 0.077 3.923 10 C -0.180 4.180 11 C -0.100 4.100 12 C -0.002 4.002 13 N -0.623 5.623 14 C 0.537 3.463 15 O -0.542 6.542 16 C 0.025 3.975 17 N -0.269 5.269 18 C 0.176 3.824 19 N -0.326 5.326 20 N -0.101 5.101 21 N -0.099 5.099 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.086 4.086 25 C -0.220 4.220 26 H 0.286 0.714 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.415 0.585 30 H 0.274 0.726 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -16.059 -3.130 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.075 3.925 10 C -0.200 4.200 11 C -0.120 4.120 12 C -0.095 4.095 13 N -0.268 5.268 14 C 0.320 3.680 15 O -0.417 6.417 16 C -0.064 4.064 17 N -0.071 5.071 18 C -0.121 4.121 19 N -0.174 5.174 20 N -0.096 5.096 21 N -0.085 5.085 22 C -0.136 4.136 23 C -0.157 4.157 24 C -0.106 4.106 25 C -0.240 4.240 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.254 0.746 30 H 0.289 0.711 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.398 -15.576 -3.869 16.054 hybrid contribution 0.685 1.300 0.437 1.533 sum 1.083 -14.277 -3.432 14.723 Atomic orbital electron populations 1.69894 1.09115 1.30433 1.36206 1.26812 0.95494 1.04761 0.91361 0.85169 0.79183 0.75829 0.79363 1.19041 1.19578 1.17585 1.19886 0.97079 0.91840 1.43241 0.89868 1.18038 0.91853 0.93804 0.88838 1.20898 1.00220 0.96388 1.02484 1.20521 0.98956 0.92446 1.00042 1.17132 0.98177 0.84296 1.09876 1.42735 1.53172 1.17337 1.13550 1.19393 0.79414 0.86868 0.82281 1.90783 1.58703 1.42362 1.49865 1.21426 0.92116 0.96421 0.96423 1.47905 1.07746 1.42882 1.08538 1.28433 1.01111 0.98685 0.83915 1.74995 1.00471 1.19470 1.22436 1.78656 1.22859 1.15883 0.92166 1.78880 0.89997 1.16147 1.23459 1.23965 0.98317 0.95884 0.95450 1.23602 1.02929 1.01956 0.87196 1.20425 0.92823 0.98519 0.98808 1.20886 1.03944 0.92744 1.06396 0.90329 0.88742 0.89198 0.74643 0.71078 0.83747 0.83882 0.85182 0.85681 0.83720 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.88 10.87 21.82 0.24 -43.64 16 2 C 0.03 1.49 5.21 85.24 0.44 1.94 16 3 Si 0.98 37.77 29.58 68.60 2.03 39.80 16 4 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.49 -25.57 9.05 23.39 0.21 -25.36 16 8 H 0.08 4.09 7.88 -2.91 -0.02 4.06 16 9 C 0.08 4.01 5.56 -21.28 -0.12 3.89 16 10 C -0.18 -9.60 8.61 22.48 0.19 -9.41 16 11 C -0.10 -4.78 8.61 22.13 0.19 -4.59 16 12 C 0.00 -0.07 6.30 38.56 0.24 0.17 16 13 N -0.62 -16.99 5.22 -303.11 -1.58 -18.58 16 14 C 0.54 15.38 7.12 87.66 0.62 16.00 16 15 O -0.54 -21.06 13.99 -3.05 -0.04 -21.10 16 16 C 0.02 0.48 2.74 2.86 0.01 0.48 16 17 N -0.27 -5.83 3.53 -314.91 -1.11 -6.95 16 18 C 0.18 3.36 12.08 180.27 2.18 5.53 16 19 N -0.33 -8.62 12.36 -60.30 -0.75 -9.37 16 20 N -0.10 -3.05 13.43 37.01 0.50 -2.55 16 21 N -0.10 -2.70 12.94 37.02 0.48 -2.22 16 22 C -0.10 -0.96 10.16 30.62 0.31 -0.64 16 23 C -0.12 -1.85 9.72 30.62 0.30 -1.55 16 24 C -0.09 -3.12 9.90 22.13 0.22 -2.90 16 25 C -0.22 -9.58 9.74 22.48 0.22 -9.36 16 26 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 27 H 0.09 5.46 6.19 -2.91 -0.02 5.44 16 28 H 0.09 4.49 6.25 -2.91 -0.02 4.48 16 29 H 0.42 7.25 6.81 -92.70 -0.63 6.62 16 30 H 0.27 2.19 6.73 -2.91 -0.02 2.17 16 31 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.13 1.84 8.04 -2.39 -0.02 1.82 16 34 H 0.12 2.13 7.89 -2.39 -0.02 2.11 16 35 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -73.07 318.52 5.30 -67.77 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.52 Total: 22.63 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 5.02 Total: -25.79 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.23 Total: -83.30 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.04 Total: -21.10 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -73.07 5.30 -67.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596670107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.855 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds