Wall clock time and date at job start Tue Mar 31 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47064 * 275.00534 * 3 2 1 5 5 H 1.48501 * 109.47236 * 35.00238 * 3 2 1 6 6 H 1.48500 * 109.47036 * 155.00174 * 3 2 1 7 7 C 1.38811 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99415 * 212.30856 * 7 2 1 9 9 N 1.36933 * 120.00054 * 32.31536 * 7 2 1 10 10 C 1.46929 * 120.62524 * 196.31319 * 9 7 2 11 11 C 1.53198 * 108.77424 * 233.63083 * 10 9 7 12 12 C 1.53043 * 109.31319 * 305.36469 * 11 10 9 13 13 N 1.46491 * 109.45970 * 181.38584 * 12 11 10 14 14 C 1.34778 * 119.99936 * 154.97420 * 13 12 11 15 15 O 1.21586 * 120.00186 * 4.93471 * 14 13 12 16 16 N 1.34783 * 120.00254 * 184.93080 * 14 13 12 17 17 C 1.46374 * 119.64124 * 354.59600 * 16 14 13 18 18 C 1.53246 * 109.48749 * 115.19324 * 17 16 14 19 19 S 1.81739 * 108.79733 * 57.65128 * 18 17 16 20 20 C 1.81740 * 102.30746 * 305.46060 * 19 18 17 21 21 C 1.46376 * 119.64624 * 174.86909 * 16 14 13 22 22 C 1.53045 * 109.52196 * 61.37492 * 12 11 10 23 23 C 1.46926 * 120.63403 * 16.33991 * 9 7 2 24 24 H 0.96999 * 120.00156 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58596 * 113.84560 * 10 9 7 26 26 H 1.09000 * 109.70693 * 353.48698 * 10 9 7 27 27 H 1.08997 * 109.49630 * 185.41665 * 11 10 9 28 28 H 1.08997 * 109.49889 * 65.31714 * 11 10 9 29 29 H 1.08998 * 109.46282 * 301.36370 * 12 11 10 30 30 H 0.96999 * 120.00667 * 334.97576 * 13 12 11 31 31 H 1.08995 * 109.46882 * 235.18979 * 17 16 14 32 32 H 1.09000 * 109.47437 * 355.18644 * 17 16 14 33 33 H 1.08997 * 109.57877 * 297.85427 * 18 17 16 34 34 H 1.09000 * 109.69433 * 177.51203 * 18 17 16 35 35 H 1.09004 * 109.58210 * 294.74908 * 20 19 18 36 36 H 1.09000 * 109.69604 * 174.40185 * 20 19 18 37 37 H 1.09001 * 109.46826 * 4.81922 * 21 16 14 38 38 H 1.08997 * 109.46683 * 124.80954 * 21 16 14 39 39 H 1.08993 * 109.50068 * 58.57788 * 22 12 11 40 40 H 1.09004 * 109.49650 * 178.67999 * 22 12 11 41 41 H 1.08999 * 109.58441 * 246.15513 * 23 9 7 42 42 H 1.08995 * 109.58290 * 6.43852 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3919 2.1075 -1.3947 5 1 1.5045 2.6199 0.8031 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 2.9648 -1.2748 0.4994 9 7 1.4845 -2.2959 -0.6350 10 6 2.0022 -3.6427 -0.3576 11 6 2.3939 -4.3031 -1.6833 12 6 1.1969 -4.2738 -2.6365 13 7 1.5576 -4.9340 -3.8934 14 6 0.5986 -5.4796 -4.6675 15 8 -0.5725 -5.3462 -4.3691 16 7 0.9377 -6.1729 -5.7724 17 6 2.3395 -6.2288 -6.1902 18 6 2.8457 -7.6717 -6.0898 19 16 1.7934 -8.7347 -7.1222 20 6 0.1310 -8.3705 -6.4846 21 6 -0.1005 -6.8569 -6.5450 22 6 0.8026 -2.8220 -2.9179 23 6 0.3926 -2.1449 -1.6063 24 1 -0.4850 0.8400 0.0004 25 1 1.2310 -4.2368 0.1327 26 1 2.8770 -3.5743 0.2890 27 1 2.6890 -5.3365 -1.5017 28 1 3.2269 -3.7591 -2.1286 29 1 0.3562 -4.7963 -2.1800 30 1 2.4867 -4.9786 -4.1687 31 1 2.4253 -5.8847 -7.2209 32 1 2.9376 -5.5880 -5.5423 33 1 2.7963 -8.0048 -5.0532 34 1 3.8759 -7.7249 -6.4420 35 1 0.0530 -8.7110 -5.4520 36 1 -0.6159 -8.8789 -7.0944 37 1 -1.0790 -6.6219 -6.1264 38 1 -0.0598 -6.5244 -7.5823 39 1 1.6508 -2.2922 -3.3514 40 1 -0.0350 -2.8011 -3.6152 41 1 -0.5099 -2.6169 -1.2178 42 1 0.2043 -1.0860 -1.7827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609336796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:58 Heat of formation + Delta-G solvation = 6.236680 kcal Electronic energy + Delta-G solvation = -22946.027111 eV Core-core repulsion = 19667.275112 eV Total energy + Delta-G solvation = -3278.751999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47290 -37.83807 -36.38302 -34.63055 -32.58951 -31.76703 -30.52129 -29.91987 -29.13579 -25.16145 -24.07966 -23.46111 -22.29567 -21.77730 -19.90433 -19.55808 -18.42815 -16.85864 -16.68678 -16.27806 -15.64246 -15.01745 -14.84088 -14.58270 -14.35584 -14.13732 -13.79869 -13.67277 -13.53842 -13.24927 -13.02252 -12.78168 -12.52212 -12.41857 -12.06134 -11.52669 -11.38844 -11.24974 -10.92388 -10.70711 -10.43017 -10.27764 -10.17772 -10.10384 -10.05722 -9.74234 -9.56833 -9.16682 -8.68092 -8.34435 -8.02208 -6.88358 -5.85655 -3.08137 1.34322 2.11351 2.51834 3.18606 3.39285 3.48452 3.49158 3.75825 4.29362 4.51129 4.54177 4.65935 4.73191 4.76046 5.02294 5.12652 5.22278 5.28599 5.36063 5.43248 5.43822 5.56992 5.59726 5.78536 6.03148 6.16767 6.19521 6.31424 6.39455 6.52679 6.60131 6.69006 6.80275 6.87060 6.96521 7.33764 7.60689 7.80799 7.92939 8.34166 8.60778 9.15208 9.84107 10.36506 11.23747 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.034499 B = 0.003147 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.422994 B = 8895.167624 C = 9085.379321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.593 5.593 10 C 0.150 3.850 11 C -0.138 4.138 12 C 0.168 3.832 13 N -0.738 5.738 14 C 0.704 3.296 15 O -0.581 6.581 16 N -0.639 5.639 17 C 0.112 3.888 18 C -0.102 4.102 19 S -0.260 6.260 20 C -0.099 4.099 21 C 0.128 3.872 22 C -0.145 4.145 23 C 0.166 3.834 24 H 0.254 0.746 25 H 0.020 0.980 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.389 0.611 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -16.012 -14.440 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.196 4.196 3 Si 0.716 3.284 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.023 3.977 11 C -0.178 4.178 12 C 0.064 3.936 13 N -0.394 5.394 14 C 0.406 3.594 15 O -0.458 6.458 16 N -0.377 5.377 17 C -0.014 4.014 18 C -0.252 4.252 19 S -0.034 6.034 20 C -0.248 4.248 21 C 0.003 3.997 22 C -0.185 4.185 23 C 0.039 3.961 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.552 -16.489 -14.959 22.724 hybrid contribution 0.639 1.538 0.712 1.812 sum 5.191 -14.951 -14.247 21.294 Atomic orbital electron populations 1.70245 1.05444 1.25782 1.51590 1.24714 0.94861 0.98385 1.01666 0.86495 0.79794 0.84460 0.77641 1.21571 1.22021 1.20409 1.19197 1.00615 0.87892 1.30980 0.90990 1.44264 1.40548 1.01169 1.45631 1.20792 0.97305 0.87093 0.92528 1.22348 0.97209 0.99832 0.98459 1.20944 0.97904 0.93435 0.81330 1.45759 1.08680 1.60938 1.24020 1.15960 0.85495 0.78427 0.79565 1.90929 1.16897 1.65045 1.72923 1.47159 1.07406 1.55291 1.27870 1.21654 0.82299 0.95212 1.02206 1.23874 1.01622 0.96944 1.02715 1.86871 1.04523 1.59919 1.52091 1.23911 0.95871 1.00001 1.05043 1.21463 0.92985 0.88892 0.96402 1.22527 1.00585 0.94487 1.00928 1.20865 0.88840 1.01285 0.85095 0.93590 0.96201 0.92236 0.92662 0.91793 0.90175 0.77473 0.89660 0.89182 0.89341 0.86592 0.89435 0.86626 0.87354 0.90258 0.92711 0.92604 0.96298 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 11.41 55.49 0.63 -25.21 16 2 C 0.00 0.08 4.62 -17.43 -0.08 0.00 16 3 Si 0.89 21.45 29.66 -169.99 -5.04 16.40 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -7.01 9.60 -15.06 -0.14 -7.15 16 8 H 0.07 1.91 7.93 -52.48 -0.42 1.49 16 9 N -0.59 -14.63 3.03 -172.32 -0.52 -15.15 16 10 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 11 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 12 C 0.17 2.87 2.38 -67.89 -0.16 2.71 16 13 N -0.74 -10.22 4.97 -58.63 -0.29 -10.51 16 14 C 0.70 10.49 8.21 -86.91 -0.71 9.78 16 15 O -0.58 -11.12 15.31 5.29 0.08 -11.04 16 16 N -0.64 -7.00 2.79 -179.33 -0.50 -7.50 16 17 C 0.11 0.87 6.19 -3.98 -0.02 0.84 16 18 C -0.10 -0.73 6.67 37.28 0.25 -0.48 16 19 S -0.26 -2.27 22.29 -107.50 -2.40 -4.66 16 20 C -0.10 -0.82 6.67 37.28 0.25 -0.58 16 21 C 0.13 1.24 6.23 -3.99 -0.02 1.21 16 22 C -0.14 -2.89 5.65 -26.61 -0.15 -3.04 16 23 C 0.17 4.01 5.56 -3.71 -0.02 3.99 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 1.14 7.88 -51.93 -0.41 0.74 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.55 7.65 -51.93 -0.40 1.16 16 30 H 0.39 4.23 5.98 -40.82 -0.24 3.98 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.61 5.48 -51.93 -0.28 0.33 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 1.23 6.87 -51.93 -0.36 0.87 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 2.55 5.67 -51.93 -0.29 2.26 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -32.13 338.05 -10.55 -42.68 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.61 Total: 2.01 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.00 Total: 7.90 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.68 Total: -58.38 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.04 Total: 16.40 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.40 Total: -4.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.13 -10.55 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.916 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds