Wall clock time and date at job start Tue Mar 31 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30303 * 126.33877 * 2 1 4 4 N 1.28528 * 110.07710 * 179.76146 * 3 2 1 5 5 C 1.31287 * 109.85512 * 0.39377 * 4 3 2 6 6 S 1.76200 * 126.48026 * 179.87886 * 5 4 3 7 7 C 1.81005 * 100.00207 * 359.69092 * 6 5 4 8 8 H 1.09000 * 109.47264 * 54.99640 * 7 6 5 9 9 C 1.53001 * 109.46883 * 294.99852 * 7 6 5 10 10 C 1.50696 * 109.47234 * 174.99696 * 7 6 5 11 11 O 1.21280 * 120.00095 * 25.00309 * 10 7 6 12 12 N 1.34771 * 119.99966 * 204.99860 * 10 7 6 13 13 C 1.46496 * 120.00157 * 359.97438 * 12 10 7 14 14 C 1.46506 * 120.00084 * 180.02562 * 12 10 7 15 15 C 1.50699 * 109.46928 * 270.00021 * 14 12 10 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00518 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47174 * 120.00320 * 19 17 15 22 22 H 1.48497 * 109.47378 * 240.00235 * 19 17 15 23 23 N 1.36532 * 107.03279 * 359.61768 * 5 4 3 24 24 N 1.36601 * 127.14368 * 180.22355 * 23 5 4 25 25 H 1.08998 * 109.47277 * 269.99497 * 1 2 3 26 26 H 1.09001 * 109.47386 * 30.00055 * 1 2 3 27 27 H 1.09001 * 109.46753 * 149.99739 * 1 2 3 28 28 H 1.09007 * 109.46967 * 179.97438 * 9 7 6 29 29 H 1.09000 * 109.46998 * 299.99951 * 9 7 6 30 30 H 1.09002 * 109.47083 * 59.99936 * 9 7 6 31 31 H 1.08995 * 109.47445 * 269.99904 * 13 12 10 32 32 H 1.09001 * 109.47057 * 30.00532 * 13 12 10 33 33 H 1.08999 * 109.47333 * 150.00092 * 13 12 10 34 34 H 1.09004 * 109.47073 * 29.99849 * 14 12 10 35 35 H 1.09000 * 109.47212 * 149.99932 * 14 12 10 36 36 H 0.96992 * 120.00316 * 179.97438 * 18 17 15 37 37 H 1.00900 * 111.00130 * 89.97558 * 24 23 5 38 38 H 1.00896 * 111.00190 * 213.93172 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0496 0.0000 4 7 3.5130 0.6897 0.0050 5 6 3.5953 -0.6206 0.0000 6 16 5.0749 -1.5773 0.0009 7 6 6.3068 -0.2511 0.0005 8 1 6.1220 0.4168 0.8419 9 6 6.2075 0.5367 -1.3073 10 6 7.6856 -0.8462 0.1250 11 8 7.8898 -1.9849 -0.2390 12 7 8.6919 -0.1130 0.6409 13 6 8.4455 1.2627 1.0801 14 6 10.0326 -0.6913 0.7615 15 6 10.1709 -1.3635 2.1032 16 1 9.3428 -1.3605 2.7965 17 6 11.3541 -1.9830 2.4451 18 7 12.3623 -1.9871 1.6007 19 14 11.5258 -2.8156 4.1085 20 1 10.2579 -2.6704 4.8679 21 1 11.8224 -4.2573 3.9122 22 1 12.6333 -2.1813 4.8676 23 7 2.3175 -1.1016 0.0000 24 7 1.9292 -2.4112 0.0000 25 1 -0.3634 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 6.9491 1.3357 -1.3074 29 1 6.3923 -0.1311 -2.1487 30 1 5.2101 0.9672 -1.3974 31 1 8.6174 1.9459 0.2484 32 1 7.4141 1.3563 1.4201 33 1 9.1217 1.5095 1.8986 34 1 10.1842 -1.4254 -0.0300 35 1 10.7784 0.0985 0.6722 36 1 13.1949 -2.4227 1.8414 37 1 1.8267 -2.7581 0.9419 38 1 1.0771 -2.5357 -0.5258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729023837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:23 Heat of formation + Delta-G solvation = 75.198560 kcal Electronic energy + Delta-G solvation = -21903.246671 eV Core-core repulsion = 18523.944740 eV Total energy + Delta-G solvation = -3379.301931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.15649 -39.15556 -36.78019 -34.91006 -33.36690 -32.70227 -32.15313 -30.05022 -28.09929 -27.73140 -25.94366 -24.46616 -23.01567 -22.42430 -21.79229 -19.22792 -18.21392 -17.81910 -16.97795 -16.74371 -16.43162 -15.54282 -15.43604 -14.73451 -14.64329 -14.20768 -13.90592 -13.57916 -13.35388 -13.11408 -13.03344 -12.45611 -12.23650 -11.98883 -11.90654 -11.70402 -11.64807 -11.48746 -11.22017 -10.87598 -10.82864 -10.61177 -10.17284 -10.16949 -10.03789 -9.79846 -9.62316 -9.03734 -8.44504 -7.72280 -7.57810 -6.05256 -4.10063 0.97757 1.34829 1.95873 2.07018 2.52373 3.29499 3.30354 3.38024 3.42559 3.70194 3.85570 4.17576 4.44339 4.64995 4.88233 4.89540 5.01047 5.03560 5.19764 5.25937 5.29721 5.39071 5.63813 5.67350 5.81014 5.92343 5.96026 6.07017 6.20504 6.31933 6.97954 7.07763 7.39774 7.47302 7.90666 8.20804 8.29066 8.37568 8.82290 8.98701 9.55027 11.02992 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.003497 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.589725 B = 8005.388943 C = 8422.233692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.138 3.862 3 N -0.271 5.271 4 N -0.292 5.292 5 C 0.180 3.820 6 S 0.099 5.901 7 C -0.118 4.118 8 H 0.120 0.880 9 C -0.140 4.140 10 C 0.526 3.474 11 O -0.528 6.528 12 N -0.590 5.590 13 C 0.078 3.922 14 C 0.245 3.755 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 N -0.311 5.311 24 N -0.583 5.583 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.367 0.633 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.433 3.920 -3.285 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.133 4.133 3 N -0.112 5.112 4 N -0.138 5.138 5 C -0.193 4.193 6 S 0.328 5.672 7 C -0.251 4.251 8 H 0.138 0.862 9 C -0.199 4.199 10 C 0.310 3.690 11 O -0.405 6.405 12 N -0.322 5.322 13 C -0.066 4.066 14 C 0.126 3.874 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 N -0.095 5.095 24 N -0.215 5.215 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.186 0.814 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.837 3.374 -3.842 22.428 hybrid contribution -1.377 -0.214 1.520 2.063 sum -23.215 3.160 -2.321 23.544 Atomic orbital electron populations 1.20191 0.83499 1.04672 1.04030 1.25476 0.97072 0.83246 1.07481 1.73940 0.96681 1.23363 1.17210 1.74811 1.11387 1.05810 1.21744 1.27287 0.90842 0.95215 1.05999 1.86525 0.86046 1.03563 1.91108 1.23776 0.95898 1.00272 1.05124 0.86201 1.21972 1.04174 0.99965 0.93776 1.19307 0.84442 0.86127 0.79172 1.90715 1.82875 1.17411 1.49528 1.48061 1.11671 1.13102 1.59344 1.21780 1.01488 0.83257 1.00100 1.19378 0.75553 0.94354 0.98081 1.21462 0.98861 1.35267 1.01007 0.92291 1.24932 0.95631 0.96003 0.97505 1.69937 1.03805 1.44129 1.35452 0.86434 0.77979 0.79343 0.83632 1.19756 1.20833 1.20950 1.44994 1.05257 1.02162 1.57062 1.59584 1.42718 0.97293 1.21918 0.89574 0.88157 0.90792 0.90958 0.91281 0.89987 0.93214 0.92141 0.90385 0.93599 0.94620 0.92722 0.81447 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.36 36.01 0.37 0.04 16 2 C 0.14 1.48 8.13 -153.99 -1.25 0.23 16 3 N -0.27 -3.89 12.18 33.00 0.40 -3.49 16 4 N -0.29 -4.55 9.76 30.68 0.30 -4.25 16 5 C 0.18 2.62 7.88 -88.34 -0.70 1.92 16 6 S 0.10 1.58 21.02 -107.50 -2.26 -0.68 16 7 C -0.12 -1.96 2.02 -27.88 -0.06 -2.01 16 8 H 0.12 1.87 6.06 -51.92 -0.31 1.55 16 9 C -0.14 -2.04 8.97 37.16 0.33 -1.70 16 10 C 0.53 11.14 6.79 -10.99 -0.07 11.06 16 11 O -0.53 -13.28 15.72 5.56 0.09 -13.20 16 12 N -0.59 -12.63 2.86 -182.96 -0.52 -13.15 16 13 C 0.08 1.26 9.91 59.84 0.59 1.85 16 14 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 15 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 16 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 N -0.31 -3.48 3.81 -9.93 -0.04 -3.52 16 24 N -0.58 -4.31 10.41 60.35 0.63 -3.68 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.19 7.41 -51.93 -0.38 -0.20 16 28 H 0.07 0.96 7.66 -51.93 -0.40 0.56 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.18 5.92 -51.93 -0.31 0.87 16 31 H 0.05 0.69 8.01 -51.93 -0.42 0.28 16 32 H 0.06 0.85 5.85 -51.93 -0.30 0.55 16 33 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 35 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.37 1.98 9.21 -181.36 -1.67 0.31 16 38 H 0.37 1.48 8.27 -181.37 -1.50 -0.02 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -36.38 336.45 -9.18 -45.56 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.33 Total: -3.87 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.23 Total: 4.15 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 1.51 Total: -53.90 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.26 Total: -0.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.38 -9.18 -45.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729023837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.755 kcal (2) G-P(sol) polarization free energy of solvation -36.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds