Wall clock time and date at job start Tue Mar 31 2020 04:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00027 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99659 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99977 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.47001 * 180.02562 * 13 11 10 15 15 C 1.34231 * 117.00039 * 180.02562 * 14 13 11 16 16 O 1.20825 * 119.99845 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47296 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.47280 * 180.02562 * 18 17 15 20 20 H 1.09002 * 109.47479 * 305.00024 * 19 18 17 21 21 C 1.53091 * 109.47627 * 184.97696 * 19 18 17 22 22 C 1.53183 * 109.15874 * 182.40522 * 21 19 18 23 23 C 1.53178 * 109.03578 * 56.98124 * 22 21 19 24 24 C 1.53093 * 109.16264 * 303.01751 * 23 22 21 25 25 O 1.42900 * 109.47972 * 65.02057 * 19 18 17 26 26 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 27 27 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 28 28 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 29 29 H 0.97005 * 119.99806 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.47477 * 300.00192 * 13 11 10 31 31 H 1.09005 * 109.46995 * 60.00572 * 13 11 10 32 32 H 1.08999 * 109.47267 * 300.00006 * 17 15 14 33 33 H 1.08999 * 109.47237 * 59.99720 * 17 15 14 34 34 H 1.09007 * 109.46963 * 299.99994 * 18 17 15 35 35 H 1.08999 * 109.47062 * 59.99790 * 18 17 15 36 36 H 1.08996 * 109.52533 * 302.30961 * 21 19 18 37 37 H 1.09006 * 109.52463 * 62.43987 * 21 19 18 38 38 H 1.09005 * 109.54191 * 176.84650 * 22 21 19 39 39 H 1.09001 * 109.54326 * 297.11332 * 22 21 19 40 40 H 1.08997 * 109.52498 * 62.92477 * 23 22 21 41 41 H 1.09003 * 109.52078 * 183.04777 * 23 22 21 42 42 H 1.09001 * 109.48066 * 177.59252 * 24 23 22 43 43 H 1.09000 * 109.47862 * 297.61577 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2029 -3.6127 -0.0182 11 6 1.7536 -4.8834 -0.0254 12 8 0.5611 -5.1049 -0.0275 13 6 2.7328 -6.0288 -0.0319 14 8 2.0068 -7.2862 -0.0396 15 6 2.7378 -8.4120 -0.0455 16 8 3.9444 -8.3488 -0.0448 17 6 2.0536 -9.7546 -0.0542 18 6 3.1072 -10.8640 -0.0604 19 6 2.4125 -12.2272 -0.0698 20 1 1.7215 -12.2888 0.7709 21 6 3.4618 -13.3357 0.0492 22 6 2.7644 -14.6977 -0.0214 23 6 1.9715 -14.7858 -1.3290 24 6 0.9798 -13.6213 -1.3948 25 8 1.6904 -12.3856 -1.2927 26 1 -0.4850 0.8401 0.0040 27 1 0.6240 -2.5614 0.8771 28 1 0.6246 -2.5525 -0.9029 29 1 3.1566 -3.4355 -0.0177 30 1 3.3595 -5.9661 -0.9216 31 1 3.3595 -5.9762 0.8584 32 1 1.4299 -9.8504 0.8346 33 1 1.4316 -9.8398 -0.9453 34 1 3.7306 -10.7681 -0.9494 35 1 3.7295 -10.7791 0.8305 36 1 4.1769 -13.2497 -0.7688 37 1 3.9843 -13.2419 1.0013 38 1 3.5110 -15.4915 0.0064 39 1 2.0854 -14.8040 0.8246 40 1 2.6564 -14.7291 -2.1750 41 1 1.4284 -15.7303 -1.3628 42 1 0.4426 -13.6544 -2.3427 43 1 0.2699 -13.7014 -0.5716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732380447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:53 Heat of formation + Delta-G solvation = -195.623558 kcal Electronic energy + Delta-G solvation = -23323.710872 eV Core-core repulsion = 19561.159934 eV Total energy + Delta-G solvation = -3762.550938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61587 -39.77738 -38.69459 -36.44469 -34.37309 -34.23564 -34.01052 -32.40453 -30.77999 -29.14294 -26.93200 -26.00329 -24.34674 -22.74970 -22.15438 -20.79432 -20.43817 -19.91461 -17.80479 -17.43672 -17.07925 -16.53010 -16.46490 -16.00547 -15.39841 -15.11889 -15.02890 -14.90457 -14.78376 -14.19812 -14.08098 -13.80246 -13.16187 -13.02202 -12.78141 -12.62388 -12.39178 -12.16446 -11.98019 -11.75778 -11.61530 -11.58025 -11.29487 -11.10450 -11.01354 -10.91749 -10.69304 -10.65023 -10.54006 -10.34163 -9.80616 -9.43755 -9.16019 -8.77848 -7.97981 -6.19328 -4.26715 2.16886 2.47335 3.19525 3.23411 3.29635 3.32113 3.38913 3.96843 4.26048 4.33273 4.35977 4.42211 4.48354 4.66588 4.72488 4.86498 4.90745 4.99851 5.07780 5.16790 5.19229 5.22693 5.26492 5.31877 5.35502 5.37579 5.42365 5.51102 5.58522 5.63357 5.70876 5.83410 5.92168 6.40425 6.87566 7.23368 7.31932 7.46411 7.60010 7.72494 7.92354 8.50968 8.71801 8.97523 9.39638 10.90794 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.052940 B = 0.001904 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.771672 B =14700.601161 C =15060.679677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.534 6.534 13 C 0.048 3.952 14 O -0.330 6.330 15 C 0.461 3.539 16 O -0.515 6.515 17 C -0.111 4.111 18 C -0.100 4.100 19 C 0.090 3.910 20 H 0.062 0.938 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.158 4.158 24 C 0.061 3.939 25 O -0.377 6.377 26 H 0.266 0.734 27 H 0.029 0.971 28 H 0.030 0.970 29 H 0.393 0.607 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 -28.934 0.034 29.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.245 6.245 15 C 0.304 3.696 16 O -0.404 6.404 17 C -0.148 4.148 18 C -0.138 4.138 19 C 0.032 3.968 20 H 0.080 0.920 21 C -0.188 4.188 22 C -0.161 4.161 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.296 6.296 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.226 0.774 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.778 -28.738 -0.117 29.314 hybrid contribution 1.047 0.857 0.208 1.369 sum 6.825 -27.881 0.091 28.704 Atomic orbital electron populations 1.69977 1.06116 1.27396 1.48681 1.24958 0.94941 0.99497 0.94614 0.86384 0.79600 0.82503 0.78235 1.20440 1.19725 1.20970 1.21216 0.93341 0.90319 1.53507 0.91758 1.19177 0.88180 0.81546 0.98031 1.46369 1.11497 1.05381 1.72476 1.19913 0.89143 0.84005 0.78728 1.90709 1.16344 1.84569 1.49558 1.22850 0.94363 0.81207 1.04500 1.86576 1.40514 1.14062 1.83298 1.23868 0.86585 0.86987 0.72122 1.90656 1.15691 1.88073 1.45977 1.21356 0.99634 0.87189 1.06642 1.21469 0.97029 0.90580 1.04677 1.22127 0.92920 0.94381 0.87332 0.92018 1.22199 0.98723 0.94719 1.03201 1.21593 0.99530 0.97308 0.97628 1.22203 0.99472 0.99214 0.98667 1.22563 0.93271 0.83580 1.02206 1.87963 1.65789 1.37400 1.38484 0.92378 0.95255 0.95246 0.77436 0.88565 0.88582 0.87621 0.86698 0.89934 0.89461 0.90796 0.90668 0.91447 0.91795 0.91018 0.90959 0.88790 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.55 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.78 5.55 -61.47 -0.34 -15.12 16 11 C 0.50 10.16 7.91 -10.99 -0.09 10.08 16 12 O -0.53 -13.25 16.50 -14.11 -0.23 -13.48 16 13 C 0.05 0.75 5.94 36.01 0.21 0.97 16 14 O -0.33 -5.29 9.75 -45.91 -0.45 -5.74 16 15 C 0.46 6.20 7.96 36.00 0.29 6.48 16 16 O -0.52 -7.75 15.73 -18.75 -0.29 -8.05 16 17 C -0.11 -1.07 5.71 -27.88 -0.16 -1.23 16 18 C -0.10 -0.85 4.21 -26.73 -0.11 -0.96 16 19 C 0.09 0.67 2.64 -26.68 -0.07 0.60 16 20 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 21 C -0.15 -0.94 5.42 -26.59 -0.14 -1.09 16 22 C -0.12 -0.66 6.03 -26.54 -0.16 -0.82 16 23 C -0.16 -0.86 6.14 -26.59 -0.16 -1.02 16 24 C 0.06 0.39 6.84 37.21 0.25 0.65 16 25 O -0.38 -3.35 9.94 -35.23 -0.35 -3.70 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 30 H 0.10 1.32 8.13 -51.93 -0.42 0.89 16 31 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 1.10 7.82 -51.93 -0.41 0.70 16 34 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -33.89 362.81 -8.11 -42.00 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.04 Total: 1.21 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.59 Total: 6.88 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.40 Total: -40.30 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.33 Total: -30.97 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.89 -8.11 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732380447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.621 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds