Wall clock time and date at job start Tue Mar 31 2020 04:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00027 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99659 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99977 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.47001 * 180.02562 * 13 11 10 15 15 C 1.34231 * 117.00039 * 180.02562 * 14 13 11 16 16 O 1.20825 * 119.99845 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00076 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47296 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.47280 * 180.02562 * 18 17 15 20 20 H 1.09002 * 109.47479 * 305.00024 * 19 18 17 21 21 C 1.53091 * 109.47627 * 184.97696 * 19 18 17 22 22 C 1.53183 * 109.15874 * 182.40522 * 21 19 18 23 23 C 1.53178 * 109.03578 * 56.98124 * 22 21 19 24 24 C 1.53093 * 109.16264 * 303.01751 * 23 22 21 25 25 O 1.42900 * 109.47972 * 65.02057 * 19 18 17 26 26 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 27 27 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 28 28 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 29 29 H 0.97005 * 119.99806 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.47477 * 300.00192 * 13 11 10 31 31 H 1.09005 * 109.46995 * 60.00572 * 13 11 10 32 32 H 1.08999 * 109.47267 * 300.00006 * 17 15 14 33 33 H 1.08999 * 109.47237 * 59.99720 * 17 15 14 34 34 H 1.09007 * 109.46963 * 299.99994 * 18 17 15 35 35 H 1.08999 * 109.47062 * 59.99790 * 18 17 15 36 36 H 1.08996 * 109.52533 * 302.30961 * 21 19 18 37 37 H 1.09006 * 109.52463 * 62.43987 * 21 19 18 38 38 H 1.09005 * 109.54191 * 176.84650 * 22 21 19 39 39 H 1.09001 * 109.54326 * 297.11332 * 22 21 19 40 40 H 1.08997 * 109.52498 * 62.92477 * 23 22 21 41 41 H 1.09003 * 109.52078 * 183.04777 * 23 22 21 42 42 H 1.09001 * 109.48066 * 177.59252 * 24 23 22 43 43 H 1.09000 * 109.47862 * 297.61577 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2029 -3.6127 -0.0182 11 6 1.7536 -4.8834 -0.0254 12 8 0.5611 -5.1049 -0.0275 13 6 2.7328 -6.0288 -0.0319 14 8 2.0068 -7.2862 -0.0396 15 6 2.7378 -8.4120 -0.0455 16 8 3.9444 -8.3488 -0.0448 17 6 2.0536 -9.7546 -0.0542 18 6 3.1072 -10.8640 -0.0604 19 6 2.4125 -12.2272 -0.0698 20 1 1.7215 -12.2888 0.7709 21 6 3.4618 -13.3357 0.0492 22 6 2.7644 -14.6977 -0.0214 23 6 1.9715 -14.7858 -1.3290 24 6 0.9798 -13.6213 -1.3948 25 8 1.6904 -12.3856 -1.2927 26 1 -0.4850 0.8401 0.0040 27 1 0.6240 -2.5614 0.8771 28 1 0.6246 -2.5525 -0.9029 29 1 3.1566 -3.4355 -0.0177 30 1 3.3595 -5.9661 -0.9216 31 1 3.3595 -5.9762 0.8584 32 1 1.4299 -9.8504 0.8346 33 1 1.4316 -9.8398 -0.9453 34 1 3.7306 -10.7681 -0.9494 35 1 3.7295 -10.7791 0.8305 36 1 4.1769 -13.2497 -0.7688 37 1 3.9843 -13.2419 1.0013 38 1 3.5110 -15.4915 0.0064 39 1 2.0854 -14.8040 0.8246 40 1 2.6564 -14.7291 -2.1750 41 1 1.4284 -15.7303 -1.3628 42 1 0.4426 -13.6544 -2.3427 43 1 0.2699 -13.7014 -0.5716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732380447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:52 Heat of formation + Delta-G solvation = -217.855094 kcal Electronic energy + Delta-G solvation = -23324.674903 eV Core-core repulsion = 19561.159934 eV Total energy + Delta-G solvation = -3763.514970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75617 -40.50534 -40.21461 -37.65079 -36.18901 -35.06141 -34.51538 -34.42127 -31.54400 -30.60169 -28.58704 -26.85083 -24.98205 -24.52903 -22.99746 -21.66225 -21.55993 -21.09337 -19.22298 -18.83823 -18.03548 -17.83460 -17.33429 -17.17666 -16.91225 -16.57784 -16.30062 -15.86486 -15.57505 -15.31339 -14.97699 -14.65998 -14.62106 -14.13327 -14.08263 -13.78320 -13.56923 -13.54318 -13.02134 -12.93778 -12.88313 -12.71876 -12.23385 -12.22175 -12.08857 -11.91623 -11.82851 -11.69639 -11.54019 -11.50156 -11.16613 -10.91330 -10.82118 -10.32784 -9.93930 -8.29932 -6.46670 1.11061 1.29683 1.44812 1.46262 1.54613 1.57871 2.34150 2.58004 2.86381 3.05262 3.58229 3.67436 3.72915 3.93436 3.98185 4.03020 4.04605 4.07775 4.11626 4.30576 4.35174 4.42220 4.57787 4.65004 4.76595 4.88537 4.94903 4.95849 5.06740 5.10668 5.13901 5.18558 5.21171 5.23833 5.34211 5.41424 5.42949 5.62650 5.81531 6.35222 6.59533 6.62941 6.78327 7.19905 7.35098 8.82174 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.052940 B = 0.001904 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.771672 B =14700.601161 C =15060.679677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.256 1.256 6 H -0.284 1.284 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.584 6.584 13 C 0.060 3.940 14 O -0.351 6.351 15 C 0.463 3.537 16 O -0.531 6.531 17 C -0.105 4.105 18 C -0.095 4.095 19 C 0.090 3.910 20 H 0.074 0.926 21 C -0.150 4.150 22 C -0.123 4.123 23 C -0.156 4.156 24 C 0.054 3.946 25 O -0.401 6.401 26 H 0.269 0.731 27 H -0.007 1.007 28 H -0.008 1.008 29 H 0.412 0.588 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 -29.709 0.495 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.180 1.180 6 H -0.210 1.210 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.465 6.465 13 C -0.017 4.017 14 O -0.267 6.267 15 C 0.308 3.692 16 O -0.421 6.421 17 C -0.142 4.142 18 C -0.132 4.132 19 C 0.033 3.967 20 H 0.092 0.908 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.194 4.194 24 C -0.022 4.022 25 O -0.321 6.321 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.010 0.990 29 H 0.249 0.751 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.764 -29.550 0.342 30.554 hybrid contribution 0.408 1.012 0.052 1.092 sum 8.172 -28.537 0.395 29.687 Atomic orbital electron populations 1.70136 1.08245 1.28632 1.49787 1.26064 0.95792 1.03894 0.93810 0.85135 0.78446 0.76908 0.78585 1.19596 1.17971 1.21000 1.21619 0.94441 0.90407 1.53123 0.89584 1.18638 0.88596 0.83820 0.94603 1.46052 1.11718 1.04749 1.72513 1.20731 0.89319 0.84753 0.76731 1.90684 1.18959 1.85333 1.51520 1.22718 0.92551 0.79456 1.07003 1.86583 1.41627 1.14693 1.83794 1.24530 0.86478 0.87078 0.71126 1.90646 1.16412 1.88153 1.46850 1.21487 0.99955 0.85208 1.07594 1.21443 0.96644 0.90874 1.04259 1.22162 0.93322 0.93929 0.87304 0.90844 1.22194 0.98336 0.94913 1.03345 1.21612 0.99777 0.96887 0.97755 1.22190 0.99240 0.99473 0.98461 1.22724 0.93558 0.83127 1.02836 1.87925 1.66252 1.38672 1.39240 0.92193 0.98922 0.98987 0.75121 0.86061 0.85791 0.85603 0.86588 0.91419 0.88825 0.91817 0.89634 0.90716 0.91051 0.91914 0.89517 0.88396 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.99 42.00 29.54 68.60 2.03 44.02 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.56 -30.03 9.28 25.60 0.24 -29.79 16 8 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.47 5.43 85.63 0.46 14.94 16 10 N -0.70 -29.22 5.55 -466.77 -2.59 -31.81 16 11 C 0.50 20.35 7.91 87.66 0.69 21.04 16 12 O -0.58 -29.87 16.50 15.75 0.26 -29.61 16 13 C 0.06 1.76 5.94 71.24 0.42 2.18 16 14 O -0.35 -10.91 9.75 -45.07 -0.44 -11.35 16 15 C 0.46 11.81 7.96 71.23 0.57 12.38 16 16 O -0.53 -15.10 15.73 21.97 0.35 -14.75 16 17 C -0.11 -1.89 5.71 29.85 0.17 -1.72 16 18 C -0.09 -1.49 4.21 30.60 0.13 -1.36 16 19 C 0.09 1.20 2.64 30.63 0.08 1.29 16 20 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 21 C -0.15 -1.66 5.42 30.69 0.17 -1.49 16 22 C -0.12 -1.09 6.03 30.71 0.19 -0.91 16 23 C -0.16 -1.48 6.14 30.68 0.19 -1.29 16 24 C 0.05 0.63 6.84 72.01 0.49 1.12 16 25 O -0.40 -6.75 9.94 -148.98 -1.48 -8.23 16 26 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.41 13.88 8.32 -92.70 -0.77 13.11 16 30 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 31 H 0.12 3.01 8.13 -2.38 -0.02 2.99 16 32 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.12 2.11 7.82 -2.39 -0.02 2.10 16 34 H 0.07 1.27 8.10 -2.38 -0.02 1.25 16 35 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -75.01 362.81 2.89 -72.11 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.23 Total: 17.96 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 4.26 Total: 17.07 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.30 Total: -87.22 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -1.32 Total: -63.95 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -75.01 2.89 -72.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732380447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.744 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds