Wall clock time and date at job start Tue Mar 31 2020 03:36:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08992 * 109.46958 * 2 1
4 4 O 1.45206 * 109.46839 * 239.99542 * 2 1 3
5 5 C 1.34228 * 116.99418 * 90.00434 * 4 2 1
6 6 O 1.20828 * 120.00406 * 359.97438 * 5 4 2
7 7 C 1.50706 * 119.99582 * 179.97438 * 5 4 2
8 8 H 1.08995 * 115.56045 * 298.48201 * 7 5 4
9 9 C 1.53000 * 117.49562 * 152.79473 * 7 5 4
10 10 C 1.52998 * 59.99972 * 252.51172 * 9 7 5
11 11 H 1.09000 * 117.50166 * 252.51333 * 10 9 7
12 12 C 1.50702 * 117.51938 * 107.48234 * 10 9 7
13 13 O 1.20821 * 119.99778 * 27.21444 * 12 10 9
14 14 O 1.34226 * 120.00109 * 207.21536 * 12 10 9
15 15 C 1.50701 * 109.46869 * 120.00088 * 2 1 3
16 16 O 1.21280 * 119.99957 * 120.00307 * 15 2 1
17 17 N 1.34777 * 119.99768 * 299.99666 * 15 2 1
18 18 C 1.46500 * 120.00018 * 0.02562 * 17 15 2
19 19 C 1.46504 * 119.99568 * 180.02562 * 17 15 2
20 20 C 1.50702 * 109.47018 * 90.00430 * 19 17 15
21 21 H 1.08003 * 120.00184 * 359.97438 * 20 19 17
22 22 C 1.37878 * 119.99915 * 179.97438 * 20 19 17
23 23 N 1.31518 * 119.99849 * 179.97438 * 22 20 19
24 24 Si 1.86799 * 120.00092 * 359.97438 * 22 20 19
25 25 H 1.48502 * 109.47016 * 90.00254 * 24 22 20
26 26 H 1.48497 * 109.47090 * 210.00416 * 24 22 20
27 27 H 1.48504 * 109.47092 * 330.00506 * 24 22 20
28 28 H 1.09001 * 109.46855 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.47082 * 300.00072 * 1 2 3
30 30 H 1.09002 * 109.46815 * 60.00303 * 1 2 3
31 31 H 1.08996 * 117.50070 * 0.02562 * 9 7 5
32 32 H 1.09001 * 117.49670 * 145.02087 * 9 7 5
33 33 H 0.96703 * 116.99743 * 179.97438 * 14 12 10
34 34 H 1.09006 * 109.46639 * 90.00239 * 18 17 15
35 35 H 1.09005 * 109.46886 * 210.00049 * 18 17 15
36 36 H 1.08994 * 109.47081 * 329.99838 * 18 17 15
37 37 H 1.09002 * 109.47032 * 209.99754 * 19 17 15
38 38 H 1.08994 * 109.47353 * 330.00055 * 19 17 15
39 39 H 0.96999 * 119.99708 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0140 -0.6846 -1.1856
5 6 2.2172 0.0639 -2.2811
6 8 1.9974 1.2517 -2.2506
7 6 2.7193 -0.5772 -3.5492
8 1 3.6990 -1.0501 -3.4811
9 6 2.3485 0.0923 -4.8740
10 6 1.6843 -1.2257 -4.4707
11 1 1.9831 -2.1252 -5.0088
12 6 0.2409 -1.1750 -4.0405
13 8 -0.4840 -0.3038 -4.4594
14 8 -0.2394 -2.0975 -3.1921
15 6 2.0323 -0.7104 1.2305
16 8 2.7296 -1.6965 1.1192
17 7 1.7067 -0.2499 2.4546
18 6 0.8641 0.9409 2.5889
19 6 2.1955 -0.9403 3.6507
20 6 3.5229 -0.3562 4.0607
21 1 3.9590 0.4485 3.4873
22 6 4.1805 -0.8491 5.1677
23 7 5.3392 -0.3397 5.5252
24 14 3.4259 -2.2403 6.1599
25 1 3.8858 -3.5429 5.6150
26 1 3.8465 -2.1210 7.5790
27 1 1.9453 -2.1629 6.0743
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.7418 0.9966 -4.8284
32 1 3.0843 0.0598 -5.6775
33 1 -1.1714 -2.0236 -2.9448
34 1 -0.1838 0.6426 2.6225
35 1 1.1219 1.4666 3.5084
36 1 1.0273 1.5996 1.7360
37 1 1.4776 -0.8150 4.4614
38 1 2.3170 -2.0015 3.4337
39 1 5.8016 -0.6862 6.3042
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000736689090.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:03
Heat of formation + Delta-G solvation = -165.506793 kcal
Electronic energy + Delta-G solvation = -24908.888848 eV
Core-core repulsion = 21011.810777 eV
Total energy + Delta-G solvation = -3897.078071 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 299.129 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.28954 -40.35052 -39.16239 -37.37804 -36.40079 -36.07495 -35.10099 -32.88778
-31.71215 -28.33548 -26.62151 -26.30210 -25.41358 -24.03810 -22.11869 -21.26381
-20.43094 -18.96364 -18.78010 -17.99572 -17.09835 -16.98262 -16.95692 -16.35768
-15.89359 -15.52452 -15.13423 -14.91073 -14.73283 -13.99548 -13.72149 -13.56371
-13.28944 -12.97987 -12.49902 -12.47322 -12.35291 -12.29167 -11.88479 -11.87674
-11.61111 -11.43239 -11.33576 -11.29506 -11.00325 -10.87186 -10.76914 -10.64271
-10.55619 -10.18769 -9.58692 -9.06579 -8.62491 -7.83434 -6.12085 -4.11829
1.68425 1.90860 2.18820 2.55555 3.13357 3.16494 3.26988 3.32791
3.34664 3.69513 4.03123 4.09491 4.36313 4.43900 4.67547 4.75607
4.86080 4.89292 5.00571 5.19940 5.21102 5.23814 5.41130 5.54053
5.55645 5.56575 5.71994 5.88416 6.12601 6.14217 6.28598 6.60673
6.86035 7.19518 7.53764 7.54722 7.57207 8.06401 8.41344 8.78028
8.91200 9.47138 11.01209
Molecular weight = 299.13amu
Principal moments of inertia in cm(-1)
A = 0.026486 B = 0.003538 C = 0.003466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.909730 B = 7912.611004 C = 8075.678243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.070 3.930
3 H 0.108 0.892
4 O -0.313 6.313
5 C 0.482 3.518
6 O -0.497 6.497
7 C -0.134 4.134
8 H 0.160 0.840
9 C -0.112 4.112
10 C -0.142 4.142
11 H 0.157 0.843
12 C 0.502 3.498
13 O -0.505 6.505
14 O -0.500 6.500
15 C 0.512 3.488
16 O -0.517 6.517
17 N -0.591 5.591
18 C 0.075 3.925
19 C 0.217 3.783
20 C -0.533 4.533
21 H 0.075 0.925
22 C 0.073 3.927
23 N -0.896 5.896
24 Si 0.877 3.123
25 H -0.273 1.273
26 H -0.284 1.284
27 H -0.266 1.266
28 H 0.072 0.928
29 H 0.094 0.906
30 H 0.065 0.935
31 H 0.120 0.880
32 H 0.129 0.871
33 H 0.413 0.587
34 H 0.053 0.947
35 H 0.081 0.919
36 H 0.061 0.939
37 H 0.034 0.966
38 H 0.039 0.961
39 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.441 -0.632 -18.660 21.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.012 3.988
3 H 0.126 0.874
4 O -0.228 6.228
5 C 0.324 3.676
6 O -0.384 6.384
7 C -0.153 4.153
8 H 0.177 0.823
9 C -0.148 4.148
10 C -0.161 4.161
11 H 0.175 0.825
12 C 0.344 3.656
13 O -0.392 6.392
14 O -0.311 6.311
15 C 0.297 3.703
16 O -0.392 6.392
17 N -0.324 5.324
18 C -0.069 4.069
19 C 0.097 3.903
20 C -0.572 4.572
21 H 0.093 0.907
22 C -0.129 4.129
23 N -0.534 5.534
24 Si 0.704 3.296
25 H -0.198 1.198
26 H -0.210 1.210
27 H -0.190 1.190
28 H 0.091 0.909
29 H 0.113 0.887
30 H 0.084 0.916
31 H 0.138 0.862
32 H 0.147 0.853
33 H 0.272 0.728
34 H 0.071 0.929
35 H 0.100 0.900
36 H 0.080 0.920
37 H 0.052 0.948
38 H 0.057 0.943
39 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -10.789 -0.621 -18.722 21.617
hybrid contribution -0.796 -0.498 0.888 1.293
sum -11.585 -1.119 -17.834 21.296
Atomic orbital electron populations
1.22408 0.92415 1.04091 1.04333 1.22620 0.95692 0.97750 0.82768
0.87435 1.86629 1.76046 1.40889 1.19196 1.22544 0.74445 0.85554
0.85096 1.90685 1.47335 1.16203 1.84184 1.21902 1.01043 1.04715
0.87661 0.82292 1.23294 1.01352 0.95177 0.95000 1.21861 0.87610
1.02211 1.04399 0.82536 1.22255 0.89703 0.78266 0.75412 1.90752
1.59429 1.35534 1.53531 1.84578 1.34328 1.52625 1.59548 1.19731
0.81516 0.85347 0.83740 1.90710 1.36634 1.25997 1.85829 1.47719
1.50102 1.28532 1.06081 1.21922 0.93696 0.87842 1.03401 1.19727
0.95487 0.93742 0.81309 1.21320 1.03140 1.20504 1.12192 0.90726
1.24857 0.94612 0.96464 0.97009 1.69898 1.14734 1.42257 1.26507
0.86838 0.80013 0.83228 0.79536 1.19818 1.21004 1.19028 0.90856
0.88719 0.91562 0.86197 0.85252 0.72840 0.92891 0.90015 0.91987
0.94798 0.94323 0.92480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.21 9.18 37.16 0.34 -1.87 16
2 C 0.07 1.16 2.18 -27.88 -0.06 1.10 16
3 H 0.11 1.75 6.42 -51.93 -0.33 1.42 16
4 O -0.31 -5.21 9.42 -45.90 -0.43 -5.64 16
5 C 0.48 7.01 6.62 36.01 0.24 7.25 16
6 O -0.50 -8.13 15.82 -18.75 -0.30 -8.43 16
7 C -0.13 -1.32 6.29 -91.77 -0.58 -1.90 16
8 H 0.16 1.18 8.14 -51.93 -0.42 0.76 16
9 C -0.11 -0.86 9.56 -26.73 -0.26 -1.11 16
10 C -0.14 -1.17 6.29 -91.77 -0.58 -1.75 16
11 H 0.16 0.77 8.14 -51.93 -0.42 0.34 16
12 C 0.50 5.38 7.02 36.01 0.25 5.64 16
13 O -0.50 -6.73 17.36 -18.75 -0.33 -7.06 16
14 O -0.50 -4.67 13.42 -39.25 -0.53 -5.19 16
15 C 0.51 10.70 7.15 -10.98 -0.08 10.63 16
16 O -0.52 -13.04 16.08 -14.10 -0.23 -13.27 16
17 N -0.59 -12.04 2.86 -182.95 -0.52 -12.56 16
18 C 0.07 1.11 8.80 59.85 0.53 1.64 16
19 C 0.22 5.24 4.23 -5.19 -0.02 5.22 16
20 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16
21 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16
22 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
23 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16
24 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16
25 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16
26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
27 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16
28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
29 H 0.09 1.03 4.53 -51.93 -0.24 0.80 16
30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.12 1.17 7.71 -51.93 -0.40 0.77 16
32 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16
33 H 0.41 2.18 9.10 45.56 0.41 2.60 16
34 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16
35 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16
36 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16
37 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16
38 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16
39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16
LS Contribution 339.72 15.07 5.12 5.12
Total: -1.00 -38.88 339.72 -5.83 -44.72
By element:
Atomic # 1 Polarization: 5.21 SS G_CDS: -4.08 Total: 1.14 kcal
Atomic # 6 Polarization: 11.93 SS G_CDS: -0.65 Total: 11.28 kcal
Atomic # 7 Polarization: -39.55 SS G_CDS: 0.25 Total: -39.30 kcal
Atomic # 8 Polarization: -37.78 SS G_CDS: -1.81 Total: -39.59 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -38.88 -5.83 -44.72 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736689090.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -120.790 kcal
(2) G-P(sol) polarization free energy of solvation -38.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds