Wall clock time and date at job start Tue Mar 31 2020 03:36:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08992 * 109.46958 * 2 1
4 4 O 1.45206 * 109.46839 * 239.99542 * 2 1 3
5 5 C 1.34228 * 116.99418 * 90.00434 * 4 2 1
6 6 O 1.20828 * 120.00406 * 359.97438 * 5 4 2
7 7 C 1.50706 * 119.99582 * 179.97438 * 5 4 2
8 8 H 1.08995 * 115.56045 * 298.48201 * 7 5 4
9 9 C 1.53000 * 117.49562 * 152.79473 * 7 5 4
10 10 C 1.52998 * 59.99972 * 252.51172 * 9 7 5
11 11 H 1.09000 * 117.50166 * 252.51333 * 10 9 7
12 12 C 1.50702 * 117.51938 * 107.48234 * 10 9 7
13 13 O 1.20821 * 119.99778 * 27.21444 * 12 10 9
14 14 O 1.34226 * 120.00109 * 207.21536 * 12 10 9
15 15 C 1.50701 * 109.46869 * 120.00088 * 2 1 3
16 16 O 1.21280 * 119.99957 * 120.00307 * 15 2 1
17 17 N 1.34777 * 119.99768 * 299.99666 * 15 2 1
18 18 C 1.46500 * 120.00018 * 0.02562 * 17 15 2
19 19 C 1.46504 * 119.99568 * 180.02562 * 17 15 2
20 20 C 1.50702 * 109.47018 * 90.00430 * 19 17 15
21 21 H 1.08003 * 120.00184 * 359.97438 * 20 19 17
22 22 C 1.37878 * 119.99915 * 179.97438 * 20 19 17
23 23 N 1.31518 * 119.99849 * 179.97438 * 22 20 19
24 24 Si 1.86799 * 120.00092 * 359.97438 * 22 20 19
25 25 H 1.48502 * 109.47016 * 90.00254 * 24 22 20
26 26 H 1.48497 * 109.47090 * 210.00416 * 24 22 20
27 27 H 1.48504 * 109.47092 * 330.00506 * 24 22 20
28 28 H 1.09001 * 109.46855 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.47082 * 300.00072 * 1 2 3
30 30 H 1.09002 * 109.46815 * 60.00303 * 1 2 3
31 31 H 1.08996 * 117.50070 * 0.02562 * 9 7 5
32 32 H 1.09001 * 117.49670 * 145.02087 * 9 7 5
33 33 H 0.96703 * 116.99743 * 179.97438 * 14 12 10
34 34 H 1.09006 * 109.46639 * 90.00239 * 18 17 15
35 35 H 1.09005 * 109.46886 * 210.00049 * 18 17 15
36 36 H 1.08994 * 109.47081 * 329.99838 * 18 17 15
37 37 H 1.09002 * 109.47032 * 209.99754 * 19 17 15
38 38 H 1.08994 * 109.47353 * 330.00055 * 19 17 15
39 39 H 0.96999 * 119.99708 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0140 -0.6846 -1.1856
5 6 2.2172 0.0639 -2.2811
6 8 1.9974 1.2517 -2.2506
7 6 2.7193 -0.5772 -3.5492
8 1 3.6990 -1.0501 -3.4811
9 6 2.3485 0.0923 -4.8740
10 6 1.6843 -1.2257 -4.4707
11 1 1.9831 -2.1252 -5.0088
12 6 0.2409 -1.1750 -4.0405
13 8 -0.4840 -0.3038 -4.4594
14 8 -0.2394 -2.0975 -3.1921
15 6 2.0323 -0.7104 1.2305
16 8 2.7296 -1.6965 1.1192
17 7 1.7067 -0.2499 2.4546
18 6 0.8641 0.9409 2.5889
19 6 2.1955 -0.9403 3.6507
20 6 3.5229 -0.3562 4.0607
21 1 3.9590 0.4485 3.4873
22 6 4.1805 -0.8491 5.1677
23 7 5.3392 -0.3397 5.5252
24 14 3.4259 -2.2403 6.1599
25 1 3.8858 -3.5429 5.6150
26 1 3.8465 -2.1210 7.5790
27 1 1.9453 -2.1629 6.0743
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 1.7418 0.9966 -4.8284
32 1 3.0843 0.0598 -5.6775
33 1 -1.1714 -2.0236 -2.9448
34 1 -0.1838 0.6426 2.6225
35 1 1.1219 1.4666 3.5084
36 1 1.0273 1.5996 1.7360
37 1 1.4776 -0.8150 4.4614
38 1 2.3170 -2.0015 3.4337
39 1 5.8016 -0.6862 6.3042
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000736689090.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:03
Heat of formation + Delta-G solvation = -193.949396 kcal
Electronic energy + Delta-G solvation = -24910.122212 eV
Core-core repulsion = 21011.810777 eV
Total energy + Delta-G solvation = -3898.311435 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 299.129 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.31770 -41.38445 -40.60826 -38.31917 -37.40388 -36.98110 -36.79919 -34.89237
-33.20641 -30.17603 -27.88191 -27.29479 -26.32821 -25.51130 -23.73708 -22.00512
-21.45357 -20.50499 -19.70634 -19.16812 -18.89590 -18.29170 -17.99192 -17.58182
-17.27352 -16.79477 -16.48865 -16.27662 -15.67117 -15.47671 -15.10024 -14.75093
-14.54297 -14.36809 -14.03883 -13.79105 -13.70565 -13.51366 -13.11932 -13.06615
-12.85207 -12.67655 -12.61019 -12.39089 -12.22718 -12.06485 -12.01269 -11.91843
-11.76133 -11.67033 -11.64086 -10.84375 -10.72691 -9.53348 -8.35215 -6.41819
0.76555 0.95489 1.11114 1.34320 1.38591 1.46853 1.52504 1.88545
2.23650 2.31047 2.51352 2.99153 3.27926 3.32002 3.38013 3.55150
3.70305 3.76119 4.08446 4.24974 4.28300 4.46074 4.51182 4.58896
4.63002 4.75577 4.76218 4.81150 4.88966 4.95130 5.02875 5.17064
5.41809 5.46257 5.48859 6.18871 6.38548 6.51344 6.59754 6.84844
7.11228 7.25598 8.81872
Molecular weight = 299.13amu
Principal moments of inertia in cm(-1)
A = 0.026486 B = 0.003538 C = 0.003466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.909730 B = 7912.611004 C = 8075.678243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.075 3.925
3 H 0.107 0.893
4 O -0.331 6.331
5 C 0.474 3.526
6 O -0.523 6.523
7 C -0.152 4.152
8 H 0.185 0.815
9 C -0.098 4.098
10 C -0.136 4.136
11 H 0.197 0.803
12 C 0.497 3.503
13 O -0.539 6.539
14 O -0.503 6.503
15 C 0.504 3.496
16 O -0.572 6.572
17 N -0.596 5.596
18 C 0.066 3.934
19 C 0.224 3.776
20 C -0.543 4.543
21 H 0.026 0.974
22 C 0.011 3.989
23 N -0.946 5.946
24 Si 0.951 3.049
25 H -0.276 1.276
26 H -0.275 1.275
27 H -0.233 1.233
28 H 0.078 0.922
29 H 0.115 0.885
30 H 0.074 0.926
31 H 0.095 0.905
32 H 0.172 0.828
33 H 0.427 0.573
34 H 0.096 0.904
35 H 0.076 0.924
36 H 0.081 0.919
37 H 0.062 0.938
38 H 0.024 0.976
39 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.395 -1.591 -19.436 23.658
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.017 3.983
3 H 0.124 0.876
4 O -0.246 6.246
5 C 0.318 3.682
6 O -0.412 6.412
7 C -0.170 4.170
8 H 0.202 0.798
9 C -0.134 4.134
10 C -0.154 4.154
11 H 0.214 0.786
12 C 0.340 3.660
13 O -0.429 6.429
14 O -0.316 6.316
15 C 0.291 3.709
16 O -0.451 6.451
17 N -0.328 5.328
18 C -0.076 4.076
19 C 0.103 3.897
20 C -0.582 4.582
21 H 0.044 0.956
22 C -0.187 4.187
23 N -0.585 5.585
24 Si 0.773 3.227
25 H -0.201 1.201
26 H -0.201 1.201
27 H -0.156 1.156
28 H 0.097 0.903
29 H 0.134 0.866
30 H 0.093 0.907
31 H 0.114 0.886
32 H 0.190 0.810
33 H 0.289 0.711
34 H 0.114 0.886
35 H 0.095 0.905
36 H 0.099 0.901
37 H 0.079 0.921
38 H 0.042 0.958
39 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -12.800 -1.544 -19.502 23.378
hybrid contribution -0.150 -0.111 1.089 1.105
sum -12.950 -1.655 -18.413 22.571
Atomic orbital electron populations
1.22393 0.89083 1.04924 1.05728 1.22541 0.98035 0.96479 0.81231
0.87581 1.86641 1.76483 1.41741 1.19716 1.23522 0.73538 0.85489
0.85634 1.90659 1.48573 1.17349 1.84591 1.22142 1.02418 1.06435
0.86004 0.79798 1.23475 1.01396 0.93989 0.94566 1.22190 0.85630
1.04159 1.03427 0.78616 1.22803 0.90624 0.77666 0.74864 1.90738
1.60571 1.36783 1.54824 1.84566 1.35773 1.52182 1.59045 1.20525
0.80520 0.84836 0.85055 1.90666 1.39093 1.28583 1.86792 1.47795
1.50241 1.29678 1.05055 1.22289 0.94998 0.86221 1.04082 1.19446
0.93880 0.92913 0.83490 1.21560 1.05294 1.19477 1.11828 0.95607
1.25891 0.94981 0.99457 0.98368 1.70057 1.16650 1.44315 1.27514
0.85677 0.80910 0.78531 0.77604 1.20120 1.20051 1.15576 0.90308
0.86639 0.90726 0.88605 0.81050 0.71146 0.88578 0.90546 0.90088
0.92061 0.95834 0.92179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.80 9.18 71.98 0.66 -3.14 16
2 C 0.08 2.46 2.18 29.85 0.07 2.52 16
3 H 0.11 3.46 6.42 -2.39 -0.02 3.44 16
4 O -0.33 -10.99 9.42 -45.04 -0.42 -11.41 16
5 C 0.47 13.62 6.62 71.24 0.47 14.09 16
6 O -0.52 -17.14 15.82 21.96 0.35 -16.80 16
7 C -0.15 -2.71 6.29 -11.54 -0.07 -2.78 16
8 H 0.18 2.30 8.14 -2.39 -0.02 2.28 16
9 C -0.10 -1.27 9.56 30.59 0.29 -0.98 16
10 C -0.14 -1.89 6.29 -11.54 -0.07 -1.96 16
11 H 0.20 1.11 8.14 -2.39 -0.02 1.09 16
12 C 0.50 9.98 7.02 71.24 0.50 10.48 16
13 O -0.54 -14.02 17.36 21.98 0.38 -13.64 16
14 O -0.50 -8.68 13.42 -51.38 -0.69 -9.37 16
15 C 0.50 21.21 7.15 87.66 0.63 21.84 16
16 O -0.57 -29.73 16.08 15.77 0.25 -29.48 16
17 N -0.60 -23.94 2.86 -851.11 -2.43 -26.37 16
18 C 0.07 1.81 8.80 127.77 1.12 2.93 16
19 C 0.22 10.72 4.23 85.63 0.36 11.08 16
20 C -0.54 -31.92 9.94 25.60 0.25 -31.67 16
21 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16
22 C 0.01 0.66 5.47 84.65 0.46 1.12 16
23 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16
24 Si 0.95 43.66 27.47 68.60 1.88 45.54 16
25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
27 H -0.23 -9.39 6.54 99.48 0.65 -8.74 16
28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
29 H 0.12 2.13 4.53 -2.39 -0.01 2.12 16
30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
31 H 0.10 1.78 7.71 -2.39 -0.02 1.76 16
32 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.43 3.99 9.10 -74.06 -0.67 3.32 16
34 H 0.10 1.87 6.95 -2.38 -0.02 1.85 16
35 H 0.08 2.22 8.07 -2.38 -0.02 2.20 16
36 H 0.08 1.93 6.01 -2.39 -0.01 1.92 16
37 H 0.06 2.60 7.13 -2.39 -0.02 2.58 16
38 H 0.02 1.20 6.85 -2.39 -0.02 1.19 16
39 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16
Total: -1.00 -89.88 339.72 4.67 -85.21
By element:
Atomic # 1 Polarization: 11.89 SS G_CDS: 0.37 Total: 12.26 kcal
Atomic # 6 Polarization: 18.85 SS G_CDS: 4.68 Total: 23.53 kcal
Atomic # 7 Polarization: -83.71 SS G_CDS: -2.13 Total: -85.85 kcal
Atomic # 8 Polarization: -80.56 SS G_CDS: -0.13 Total: -80.69 kcal
Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal
Total: -89.88 4.67 -85.21 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000736689090.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.737 kcal
(2) G-P(sol) polarization free energy of solvation -89.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.618 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) -193.949 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds