Wall clock time and date at job start Tue Mar 31 2020 03:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46858 * 2 1 4 4 C 1.46504 * 119.99855 * 269.99711 * 3 2 1 5 5 C 1.50694 * 109.47149 * 270.00094 * 4 3 2 6 6 H 1.08006 * 120.00198 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00285 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00176 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46921 * 90.00079 * 9 7 5 11 11 H 1.48502 * 109.47088 * 209.99879 * 9 7 5 12 12 H 1.48502 * 109.46997 * 329.99845 * 9 7 5 13 13 C 1.34778 * 120.00352 * 89.99497 * 3 2 1 14 14 O 1.21277 * 119.99953 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99810 * 0.02562 * 13 3 2 16 16 O 1.45202 * 109.46925 * 179.97438 * 15 13 3 17 17 C 1.34225 * 116.99590 * 180.02562 * 16 15 13 18 18 O 1.20821 * 120.00259 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99514 * 180.02562 * 17 16 15 20 20 H 1.08993 * 115.55136 * 347.11821 * 19 17 16 21 21 C 1.52998 * 117.49401 * 201.45323 * 19 17 16 22 22 C 1.52995 * 60.00286 * 252.48483 * 21 19 17 23 23 H 1.08995 * 117.50491 * 252.51473 * 22 21 19 24 24 C 1.50707 * 117.49974 * 107.48773 * 22 21 19 25 25 O 1.20825 * 119.99680 * 31.11980 * 24 22 21 26 26 O 1.34226 * 119.99838 * 211.12344 * 24 22 21 27 27 H 1.09004 * 109.46584 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47286 * 300.00081 * 1 2 3 29 29 H 1.09001 * 109.46764 * 60.00878 * 1 2 3 30 30 H 1.08991 * 109.47286 * 239.99919 * 2 1 3 31 31 H 1.09001 * 109.46764 * 119.99122 * 2 1 3 32 32 H 1.08997 * 109.47313 * 29.99903 * 4 3 2 33 33 H 1.09004 * 109.47214 * 149.99684 * 4 3 2 34 34 H 0.97001 * 120.00497 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.46827 * 59.99987 * 15 13 3 36 36 H 1.08994 * 109.47107 * 300.00137 * 15 13 3 37 37 H 1.09004 * 117.50216 * 359.97438 * 21 19 17 38 38 H 1.09002 * 117.49800 * 144.97503 * 21 19 17 39 39 H 0.96705 * 116.99848 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3896 -2.8779 8 7 3.3488 3.1248 -3.6187 9 14 5.9136 2.0967 -3.4167 10 1 5.9777 0.8753 -4.2589 11 1 6.3922 3.2639 -4.2003 12 1 6.7736 1.9181 -2.2193 13 6 2.2428 2.0167 1.1672 14 8 2.6475 3.1600 1.1671 15 6 1.9921 1.3062 2.4723 16 8 2.3070 2.1957 3.5759 17 6 2.1370 1.7117 4.8162 18 8 1.7378 0.5823 4.9746 19 6 2.4428 2.5773 6.0113 20 1 2.9976 3.4914 5.8000 21 6 2.7215 1.8732 7.3407 22 6 1.4048 2.6244 7.1344 23 1 1.2765 3.5696 7.6618 24 6 0.1541 1.8017 6.9608 25 8 0.0556 0.7293 7.5087 26 8 -0.8503 2.2604 6.1976 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 3.6749 3.5153 -4.4446 35 1 2.6228 0.4189 2.5299 36 1 0.9444 1.0115 2.5302 37 1 2.6832 0.7839 7.3511 38 1 3.4599 2.3240 8.0039 39 1 -1.6325 1.6974 6.1165 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737094547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:09 Heat of formation + Delta-G solvation = -204.286983 kcal Electronic energy + Delta-G solvation = -24337.094403 eV Core-core repulsion = 20438.334697 eV Total energy + Delta-G solvation = -3898.759707 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23398 -41.25705 -40.54684 -38.33955 -37.33002 -37.03244 -36.83799 -34.94617 -31.78580 -30.83402 -28.65209 -27.01122 -25.82342 -24.75944 -24.08363 -22.04270 -21.43345 -20.29628 -19.67433 -18.91284 -18.65912 -18.21528 -17.93522 -17.82400 -17.18129 -16.93087 -16.45413 -16.19369 -15.73921 -15.49492 -14.91833 -14.77029 -14.58737 -14.30761 -13.97358 -13.73791 -13.62628 -13.30085 -13.09499 -13.03175 -12.69501 -12.65324 -12.52043 -12.25591 -12.12727 -12.09450 -11.90590 -11.83823 -11.79037 -11.73101 -11.59048 -10.76582 -10.64569 -9.56865 -8.23669 -6.38341 0.65779 1.10294 1.17299 1.37351 1.40240 1.50249 1.58673 1.91714 2.29445 2.42605 2.58214 3.06452 3.33606 3.37877 3.43862 3.57202 3.86399 3.91221 4.08894 4.11775 4.30877 4.34898 4.55630 4.64004 4.76321 4.85697 4.91809 4.96870 5.00757 5.14054 5.20193 5.33153 5.51594 5.52707 5.78132 6.03302 6.43763 6.59999 6.70596 6.87444 7.18848 7.35248 8.83817 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.003247 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.072021 B = 8622.315513 C = 9185.119873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.063 3.937 16 O -0.340 6.340 17 C 0.481 3.519 18 O -0.527 6.527 19 C -0.156 4.156 20 H 0.177 0.823 21 C -0.094 4.094 22 C -0.127 4.127 23 H 0.199 0.801 24 C 0.501 3.499 25 O -0.534 6.534 26 O -0.514 6.514 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.030 0.970 33 H 0.001 0.999 34 H 0.268 0.732 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.173 0.827 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -4.327 21.262 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.014 4.014 16 O -0.255 6.255 17 C 0.326 3.674 18 O -0.417 6.417 19 C -0.175 4.175 20 H 0.195 0.805 21 C -0.131 4.131 22 C -0.146 4.146 23 H 0.216 0.784 24 C 0.344 3.656 25 O -0.423 6.423 26 O -0.327 6.327 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.190 0.810 39 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.152 -4.037 21.253 22.238 hybrid contribution 0.013 -0.439 -1.098 1.183 sum -5.139 -4.476 20.155 21.276 Atomic orbital electron populations 1.22173 0.94320 1.03760 1.01849 1.21860 0.95571 0.81037 1.04354 1.48204 1.63554 1.15201 1.05704 1.18796 0.95607 0.91689 0.79663 1.21704 0.97818 1.32317 1.06676 0.92746 1.25846 1.02423 0.94368 0.96360 1.70045 1.37787 1.34055 1.14755 0.85404 0.78925 0.78201 0.78208 1.18837 1.20595 1.19771 1.20481 0.78414 0.86656 0.85752 1.90678 1.47038 1.20055 1.87709 1.22821 1.04494 0.92038 0.82039 1.86541 1.78660 1.45314 1.14971 1.23338 0.73393 0.86366 0.84322 1.90705 1.43600 1.20701 1.86708 1.22083 1.05958 1.04038 0.85430 0.80549 1.23501 0.95453 1.00852 0.93253 1.22187 0.85781 1.04354 1.02248 0.78388 1.22739 0.84684 0.83910 0.74310 1.90715 1.81195 1.23329 1.47071 1.84501 1.29523 1.53983 1.64729 0.88445 0.92533 0.93536 0.89891 0.88616 0.95244 0.98137 0.92323 0.86602 0.86375 0.88446 0.80965 0.71145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.28 16 2 C 0.09 2.83 5.93 86.38 0.51 3.34 16 3 N -0.59 -25.13 2.46 -826.16 -2.03 -27.16 16 4 C 0.26 14.09 5.16 85.63 0.44 14.53 16 5 C -0.55 -31.33 9.39 25.60 0.24 -31.09 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 9 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 C 0.50 21.38 7.75 87.66 0.68 22.06 16 14 O -0.58 -30.63 16.08 15.78 0.25 -30.38 16 15 C 0.06 1.98 4.50 71.24 0.32 2.30 16 16 O -0.34 -10.97 9.75 -45.01 -0.44 -11.41 16 17 C 0.48 12.78 7.24 71.24 0.52 13.30 16 18 O -0.53 -15.89 14.93 21.98 0.33 -15.56 16 19 C -0.16 -2.56 6.30 -11.54 -0.07 -2.64 16 20 H 0.18 2.03 8.14 -2.39 -0.02 2.01 16 21 C -0.09 -1.12 9.57 30.59 0.29 -0.82 16 22 C -0.13 -1.69 6.28 -11.54 -0.07 -1.77 16 23 H 0.20 0.93 8.14 -2.39 -0.02 0.91 16 24 C 0.50 10.35 6.11 71.24 0.44 10.78 16 25 O -0.53 -14.53 17.45 21.97 0.38 -14.14 16 26 O -0.51 -9.16 13.42 -51.37 -0.69 -9.85 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 31 H 0.10 2.29 6.44 -2.39 -0.02 2.28 16 32 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 33 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.12 3.19 7.39 -2.38 -0.02 3.17 16 36 H 0.12 3.15 7.18 -2.39 -0.02 3.14 16 37 H 0.10 1.70 7.69 -2.39 -0.02 1.68 16 38 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.43 4.43 9.10 -74.05 -0.67 3.76 16 Total: -1.00 -85.59 347.59 5.02 -80.56 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.41 Total: 8.95 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 4.49 Total: 27.71 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.74 Total: -82.51 kcal Atomic # 8 Polarization: -81.18 SS G_CDS: -0.16 Total: -81.34 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -85.59 5.02 -80.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737094547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.722 kcal (2) G-P(sol) polarization free energy of solvation -85.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds