Wall clock time and date at job start Tue Mar 31 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50701 * 115.55011 * 34.41177 * 6 4 3 8 8 O 1.20825 * 120.00027 * 145.58841 * 7 6 4 9 9 O 1.34227 * 119.99978 * 325.58606 * 7 6 4 10 10 C 1.45203 * 116.99793 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46793 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00083 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99780 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99957 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47131 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99806 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99989 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99761 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46692 * 120.00855 * 19 17 15 22 22 H 1.48505 * 109.46909 * 240.00306 * 19 17 15 23 23 C 1.53009 * 117.49762 * 248.74605 * 6 4 3 24 24 C 1.52999 * 117.50308 * 180.08746 * 6 4 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 30 30 H 1.08996 * 109.46961 * 299.99703 * 10 9 7 31 31 H 1.08995 * 109.47314 * 60.00175 * 10 9 7 32 32 H 0.97000 * 119.99753 * 0.02562 * 13 11 10 33 33 H 1.09005 * 109.46753 * 299.99938 * 14 13 11 34 34 H 1.08995 * 109.47089 * 60.00185 * 14 13 11 35 35 H 0.96993 * 120.00330 * 179.97438 * 18 17 15 36 36 H 1.09000 * 117.49351 * 359.97438 * 23 6 4 37 37 H 1.08996 * 117.49868 * 145.01897 * 23 6 4 38 38 H 1.08998 * 117.50092 * 214.97817 * 24 6 4 39 39 H 1.09006 * 117.49456 * 359.97264 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 3.1321 3.9667 0.7696 8 8 3.7063 4.8537 1.3555 9 8 1.7920 3.8979 0.8030 10 6 1.0981 4.9229 1.5621 11 6 -0.3880 4.6843 1.4864 12 8 -0.8197 3.7429 0.8554 13 7 -1.2372 5.5166 2.1209 14 6 -2.6819 5.2844 2.0479 15 6 -3.4021 6.3483 2.8356 16 1 -2.8399 7.1204 3.3398 17 6 -4.7787 6.3365 2.9117 18 7 -5.4633 5.3965 2.2973 19 14 -5.6715 7.6557 3.8875 20 1 -4.6803 8.5902 4.4785 21 1 -6.5829 8.4060 2.9867 22 1 -6.4611 7.0196 4.9725 23 6 4.6456 3.4027 -1.2634 24 6 5.4446 3.0718 -0.0003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.4194 4.8843 2.6029 31 1 1.3307 5.9031 1.1461 32 1 -0.8919 6.2693 2.6259 33 1 -3.0038 5.3228 1.0072 34 1 -2.9138 4.3041 2.4641 35 1 -6.4317 5.3880 2.3511 36 1 4.7064 2.7012 -2.0955 37 1 4.5528 4.4531 -1.5392 38 1 5.8771 3.9046 0.5542 39 1 6.0308 2.1527 -0.0013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768602056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:17 Heat of formation + Delta-G solvation = -179.741774 kcal Electronic energy + Delta-G solvation = -24248.168165 eV Core-core repulsion = 20350.472818 eV Total energy + Delta-G solvation = -3897.695347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34434 -40.25448 -38.81104 -37.65014 -36.51333 -35.88267 -34.24298 -32.41785 -31.68090 -29.44807 -27.19643 -26.09873 -23.58660 -23.09707 -22.59175 -22.13508 -20.15856 -19.92333 -18.88060 -17.61007 -17.23396 -16.87585 -16.67404 -16.32380 -15.94387 -15.46843 -15.12812 -14.63766 -14.52086 -14.23332 -14.07499 -13.55066 -13.03915 -12.96035 -12.73556 -12.49348 -12.08811 -12.01453 -11.92712 -11.77651 -11.73804 -11.50919 -11.19317 -11.00737 -10.96036 -10.92850 -10.73472 -10.55154 -10.51615 -10.35884 -9.43591 -9.16030 -8.79741 -7.98902 -6.21373 -4.28545 1.53799 1.95423 2.23917 2.41565 3.17438 3.20380 3.21202 3.28466 3.31371 3.85285 3.98881 4.16839 4.30534 4.38647 4.55116 4.94137 4.98088 5.01773 5.06806 5.14917 5.15387 5.20821 5.24943 5.33401 5.36035 5.56421 5.70881 5.92546 6.11696 6.19436 6.42725 7.21189 7.30187 7.44647 7.46512 7.55649 7.61736 7.90525 8.49609 8.70526 8.96358 9.38029 10.88785 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.003186 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.628031 B = 8785.457379 C = 9853.131372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.321 6.321 4 C 0.504 3.496 5 O -0.505 6.505 6 C -0.158 4.158 7 C 0.503 3.497 8 O -0.501 6.501 9 O -0.304 6.304 10 C 0.046 3.954 11 C 0.499 3.501 12 O -0.526 6.526 13 N -0.708 5.708 14 C 0.252 3.748 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.116 4.116 24 C -0.107 4.107 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.392 0.608 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.266 0.734 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.266 -5.440 -5.459 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.236 6.236 4 C 0.346 3.654 5 O -0.394 6.394 6 C -0.161 4.161 7 C 0.345 3.655 8 O -0.389 6.389 9 O -0.217 6.217 10 C -0.031 4.031 11 C 0.282 3.718 12 O -0.403 6.403 13 N -0.358 5.358 14 C 0.132 3.868 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.153 4.153 24 C -0.144 4.144 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.225 0.775 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.011 -6.238 -5.763 20.822 hybrid contribution -0.541 1.023 0.941 1.492 sum 18.470 -5.215 -4.823 19.789 Atomic orbital electron populations 1.21780 0.91651 1.02455 1.05002 1.23134 0.96242 0.79340 1.02036 1.86729 1.21990 1.32548 1.82303 1.21719 0.81781 0.89214 0.72639 1.90667 1.60954 1.41687 1.46140 1.20552 0.96447 0.90803 1.08260 1.21790 0.81803 0.83637 0.78257 1.90684 1.71342 1.34798 1.42114 1.86662 1.18585 1.50523 1.65945 1.22954 0.91872 0.91019 0.97294 1.19820 0.86601 0.84107 0.81265 1.90717 1.78313 1.29823 1.41436 1.46362 1.09428 1.29062 1.50982 1.19162 0.72334 0.97430 0.97880 1.21250 0.91868 1.12112 1.33044 0.91739 1.24950 0.97338 0.96156 0.95545 1.69977 1.07379 1.32744 1.42090 0.86345 0.79634 0.81211 0.79633 1.19602 1.20774 1.20773 1.23293 0.97510 1.04113 0.90386 1.23366 0.86408 1.05620 0.98975 0.90530 0.90590 0.91066 0.91406 0.91388 0.88515 0.88436 0.77504 0.95279 0.95291 0.92437 0.86257 0.86148 0.85584 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.29 37.16 0.38 -1.46 16 2 C 0.07 0.80 6.19 37.16 0.23 1.03 16 3 O -0.32 -4.71 8.77 -45.53 -0.40 -5.11 16 4 C 0.50 6.76 7.49 36.00 0.27 7.03 16 5 O -0.51 -7.18 16.01 -18.76 -0.30 -7.48 16 6 C -0.16 -1.81 2.58 -156.81 -0.41 -2.22 16 7 C 0.50 6.97 7.49 36.01 0.27 7.24 16 8 O -0.50 -7.29 16.01 -18.75 -0.30 -7.59 16 9 O -0.30 -4.85 8.30 -48.93 -0.41 -5.26 16 10 C 0.05 0.69 5.94 36.01 0.21 0.91 16 11 C 0.50 9.76 7.91 -10.98 -0.09 9.67 16 12 O -0.53 -12.39 16.50 -14.10 -0.23 -12.62 16 13 N -0.71 -14.31 5.55 -61.47 -0.34 -14.65 16 14 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 15 C -0.54 -14.39 9.28 -34.44 -0.32 -14.71 16 16 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.53 13.29 55.43 0.74 -24.80 16 19 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.12 -0.90 9.94 -26.69 -0.27 -1.16 16 24 C -0.11 -0.88 9.56 -26.69 -0.26 -1.13 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.10 1.27 8.13 -51.93 -0.42 0.84 16 31 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.13 0.95 7.67 -51.93 -0.40 0.55 16 39 H 0.13 0.94 7.67 -51.93 -0.40 0.54 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -33.82 351.92 -6.37 -40.19 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.32 Total: 3.28 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -0.09 Total: 13.27 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.40 Total: -39.45 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.64 Total: -38.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.82 -6.37 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768602056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.548 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds