Wall clock time and date at job start Tue Mar 31 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37360 * 125.83129 * 2 1 4 4 N 1.29402 * 108.82958 * 179.77286 * 3 2 1 5 5 N 1.40168 * 108.13900 * 0.38770 * 4 3 2 6 6 C 1.46500 * 126.35097 * 179.87482 * 5 4 3 7 7 C 1.52997 * 109.47473 * 269.68829 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47109 * 180.02562 * 11 10 8 13 13 O 1.42901 * 109.47337 * 65.00104 * 12 11 10 14 14 C 1.42901 * 113.99917 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46859 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99895 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99818 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46728 * 59.99899 * 19 17 15 21 21 H 1.48494 * 109.47127 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46887 * 300.00381 * 19 17 15 23 23 C 1.34813 * 125.83556 * 180.02562 * 2 1 3 24 24 O 1.21821 * 126.30167 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47004 * 269.97773 * 1 2 3 26 26 H 1.09002 * 109.47297 * 29.97515 * 1 2 3 27 27 H 1.08996 * 109.46806 * 149.97403 * 1 2 3 28 28 H 1.07997 * 125.58780 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47129 * 149.68571 * 6 5 4 30 30 H 1.08998 * 109.46845 * 29.69378 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99757 * 7 6 5 32 32 H 1.09001 * 109.46832 * 299.99948 * 7 6 5 33 33 H 1.09001 * 109.47630 * 300.00318 * 11 10 8 34 34 H 1.08998 * 109.47321 * 60.00129 * 11 10 8 35 35 H 1.09008 * 109.47083 * 185.00303 * 12 11 10 36 36 H 1.09004 * 109.47076 * 304.99555 * 12 11 10 37 37 H 1.09002 * 109.47149 * 299.99791 * 14 13 12 38 38 H 1.08995 * 109.47355 * 59.99691 * 14 13 12 39 39 H 0.97004 * 120.00052 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0008 6 6 4.7314 -1.5109 -0.0007 7 6 5.1479 -1.8055 -1.4431 8 6 6.3795 -2.6739 -1.4429 9 8 6.8732 -3.0219 -0.3964 10 8 6.9275 -3.0617 -2.6052 11 6 8.1122 -3.8976 -2.5291 12 6 8.5900 -4.2352 -3.9428 13 8 9.0128 -3.0394 -4.6010 14 6 9.4801 -3.2448 -5.9358 15 6 9.8971 -1.9245 -6.5307 16 1 9.8141 -1.0192 -5.9476 17 6 10.3856 -1.8724 -7.8189 18 7 10.4872 -2.9749 -8.5287 19 14 10.9033 -0.2359 -8.5562 20 1 11.9912 0.3545 -7.7357 21 1 11.3887 -0.4493 -9.9432 22 1 9.7409 0.6880 -8.5756 23 6 2.2543 -1.0929 -0.0005 24 8 1.8806 -2.2524 -0.0006 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 1.9250 2.1373 0.0004 29 1 4.5151 -2.4473 0.5135 30 1 5.5414 -0.9931 0.5130 31 1 5.3642 -0.8690 -1.9573 32 1 4.3378 -2.3233 -1.9566 33 1 8.9000 -3.3639 -1.9975 34 1 7.8737 -4.8181 -1.9963 35 1 9.4248 -4.9340 -3.8871 36 1 7.7730 -4.6893 -4.5037 37 1 10.3332 -3.9231 -5.9218 38 1 8.6813 -3.6780 -6.5377 39 1 10.8305 -2.9382 -9.4352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815271041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:52 Heat of formation + Delta-G solvation = -87.044800 kcal Electronic energy + Delta-G solvation = -23177.861588 eV Core-core repulsion = 19316.478635 eV Total energy + Delta-G solvation = -3861.382953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.75234 -40.40398 -37.56990 -37.22844 -36.28883 -35.81760 -33.20754 -32.76754 -30.66409 -29.80542 -27.90006 -26.94316 -25.37114 -22.96590 -22.45285 -22.12422 -21.47749 -20.65147 -18.28154 -17.40394 -17.19593 -16.82132 -16.57068 -16.30857 -16.09555 -15.82070 -15.45732 -14.81125 -14.73719 -14.43305 -14.14918 -14.00840 -13.49035 -13.22113 -13.13755 -12.77863 -12.68037 -12.45387 -12.22044 -11.92378 -11.59176 -11.43200 -10.94981 -10.85848 -10.76881 -10.61802 -10.55382 -10.40777 -10.34114 -10.05199 -9.14455 -8.93092 -8.87344 -8.21477 -6.11913 -4.13759 1.35444 1.59012 2.21134 2.31725 2.61938 2.93954 3.32167 3.34600 3.38660 4.04497 4.32149 4.34860 4.43114 4.54501 4.70772 4.74719 4.80692 4.86843 5.03802 5.13846 5.22444 5.24507 5.33384 5.44548 5.47813 5.56143 5.82349 5.86538 5.92567 6.08423 6.15628 6.56597 7.05257 7.25556 7.39667 7.69382 7.76857 7.78760 8.12346 8.52171 8.98413 9.50912 10.99583 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002484 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.873534 B =11269.941988 C =12276.539120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.563 5.563 3 C 0.254 3.746 4 N -0.277 5.277 5 N -0.451 5.451 6 C 0.175 3.825 7 C -0.136 4.136 8 C 0.472 3.528 9 O -0.518 6.518 10 O -0.338 6.338 11 C 0.074 3.926 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.643 3.357 24 O -0.551 6.551 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.232 0.768 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.857 6.704 18.300 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.293 5.293 3 C -0.045 4.045 4 N -0.098 5.098 5 N -0.272 5.272 6 C 0.054 3.946 7 C -0.175 4.175 8 C 0.314 3.686 9 O -0.407 6.407 10 O -0.254 6.254 11 C 0.001 3.999 12 C -0.017 4.017 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.343 3.657 24 O -0.424 6.424 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.248 0.752 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.862 6.097 18.491 27.108 hybrid contribution -0.371 0.292 -0.672 0.821 sum -19.233 6.389 17.819 26.986 Atomic orbital electron populations 1.21837 0.74073 1.04880 1.03560 1.45955 1.08982 1.06693 1.67628 1.25988 0.85785 0.94806 0.97912 1.77070 1.18177 0.91768 1.22791 1.48934 1.06114 1.03231 1.68951 1.21206 0.83760 0.93981 0.95672 1.21725 0.94896 1.01328 0.99517 1.23158 0.84723 0.78505 0.82177 1.90663 1.62621 1.54386 1.33060 1.86595 1.42442 1.63006 1.33331 1.23251 0.84673 0.93572 0.98420 1.22331 0.98128 0.90119 0.91094 1.87914 1.83957 1.28365 1.30860 1.20236 0.93180 0.97842 0.76715 1.21009 1.42455 0.93568 0.98338 0.91559 1.24953 0.95615 0.97342 0.96604 1.69952 1.46201 1.27130 1.10523 0.86375 0.79065 0.83042 0.77876 1.19992 1.21146 1.19981 1.16801 0.82120 0.85162 0.81659 1.91111 1.77686 1.15174 1.58468 0.90851 0.89204 0.89327 0.75187 0.87592 0.87426 0.86517 0.87136 0.90334 0.90286 0.91865 0.93172 0.97584 0.97496 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.05 59.85 0.66 1.00 16 2 N -0.56 -4.14 3.14 -130.10 -0.41 -4.55 16 3 C 0.25 1.42 12.66 -89.12 -1.13 0.29 16 4 N -0.28 -2.59 12.53 29.87 0.37 -2.21 16 5 N -0.45 -5.00 3.63 -65.12 -0.24 -5.24 16 6 C 0.17 1.90 5.68 -4.04 -0.02 1.88 16 7 C -0.14 -1.56 6.14 -27.88 -0.17 -1.73 16 8 C 0.47 6.86 7.96 36.01 0.29 7.15 16 9 O -0.52 -8.25 15.73 -18.75 -0.29 -8.54 16 10 O -0.34 -5.70 10.19 -42.02 -0.43 -6.13 16 11 C 0.07 1.19 5.84 37.16 0.22 1.41 16 12 C 0.06 1.13 6.33 37.16 0.24 1.36 16 13 O -0.39 -9.57 10.30 -38.80 -0.40 -9.97 16 14 C 0.19 5.36 5.69 36.01 0.20 5.57 16 15 C -0.52 -15.31 9.43 -34.44 -0.32 -15.63 16 16 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 19 Si 0.91 21.92 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.64 7.55 8.60 -86.74 -0.75 6.81 16 24 O -0.55 -8.32 17.71 5.08 0.09 -8.23 16 25 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.23 0.01 8.06 -52.49 -0.42 -0.42 16 29 H 0.11 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.11 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 35 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -38.31 352.03 -6.62 -44.93 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -5.45 Total: -5.68 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.89 Total: 9.63 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.47 Total: -38.21 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.03 Total: -32.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.31 -6.62 -44.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815271041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.115 kcal (2) G-P(sol) polarization free energy of solvation -38.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds