Wall clock time and date at job start Tue Mar 31 2020 03:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37360 * 125.83129 * 2 1 4 4 N 1.29402 * 108.82958 * 179.77286 * 3 2 1 5 5 N 1.40168 * 108.13900 * 0.38770 * 4 3 2 6 6 C 1.46500 * 126.35097 * 179.87482 * 5 4 3 7 7 C 1.52997 * 109.47473 * 269.68829 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47109 * 180.02562 * 11 10 8 13 13 O 1.42901 * 109.47337 * 65.00104 * 12 11 10 14 14 C 1.42901 * 113.99917 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46859 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99895 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99818 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46728 * 59.99899 * 19 17 15 21 21 H 1.48494 * 109.47127 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46887 * 300.00381 * 19 17 15 23 23 C 1.34813 * 125.83556 * 180.02562 * 2 1 3 24 24 O 1.21821 * 126.30167 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.47004 * 269.97773 * 1 2 3 26 26 H 1.09002 * 109.47297 * 29.97515 * 1 2 3 27 27 H 1.08996 * 109.46806 * 149.97403 * 1 2 3 28 28 H 1.07997 * 125.58780 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47129 * 149.68571 * 6 5 4 30 30 H 1.08998 * 109.46845 * 29.69378 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99757 * 7 6 5 32 32 H 1.09001 * 109.46832 * 299.99948 * 7 6 5 33 33 H 1.09001 * 109.47630 * 300.00318 * 11 10 8 34 34 H 1.08998 * 109.47321 * 60.00129 * 11 10 8 35 35 H 1.09008 * 109.47083 * 185.00303 * 12 11 10 36 36 H 1.09004 * 109.47076 * 304.99555 * 12 11 10 37 37 H 1.09002 * 109.47149 * 299.99791 * 14 13 12 38 38 H 1.08995 * 109.47355 * 59.99691 * 14 13 12 39 39 H 0.97004 * 120.00052 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0008 6 6 4.7314 -1.5109 -0.0007 7 6 5.1479 -1.8055 -1.4431 8 6 6.3795 -2.6739 -1.4429 9 8 6.8732 -3.0219 -0.3964 10 8 6.9275 -3.0617 -2.6052 11 6 8.1122 -3.8976 -2.5291 12 6 8.5900 -4.2352 -3.9428 13 8 9.0128 -3.0394 -4.6010 14 6 9.4801 -3.2448 -5.9358 15 6 9.8971 -1.9245 -6.5307 16 1 9.8141 -1.0192 -5.9476 17 6 10.3856 -1.8724 -7.8189 18 7 10.4872 -2.9749 -8.5287 19 14 10.9033 -0.2359 -8.5562 20 1 11.9912 0.3545 -7.7357 21 1 11.3887 -0.4493 -9.9432 22 1 9.7409 0.6880 -8.5756 23 6 2.2543 -1.0929 -0.0005 24 8 1.8806 -2.2524 -0.0006 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 1.9250 2.1373 0.0004 29 1 4.5151 -2.4473 0.5135 30 1 5.5414 -0.9931 0.5130 31 1 5.3642 -0.8690 -1.9573 32 1 4.3378 -2.3233 -1.9566 33 1 8.9000 -3.3639 -1.9975 34 1 7.8737 -4.8181 -1.9963 35 1 9.4248 -4.9340 -3.8871 36 1 7.7730 -4.6893 -4.5037 37 1 10.3332 -3.9231 -5.9218 38 1 8.6813 -3.6780 -6.5377 39 1 10.8305 -2.9382 -9.4352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815271041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:51 Heat of formation + Delta-G solvation = -112.674082 kcal Electronic energy + Delta-G solvation = -23178.972957 eV Core-core repulsion = 19316.478635 eV Total energy + Delta-G solvation = -3862.494322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.43138 -41.62789 -38.84018 -38.44447 -37.67107 -36.68061 -34.95784 -33.96003 -31.89407 -30.94130 -29.06465 -28.36575 -26.22933 -24.58447 -23.86928 -23.26202 -22.33902 -21.72328 -19.23775 -18.70419 -18.30966 -18.08363 -17.94530 -17.34870 -17.28138 -16.88552 -16.64973 -16.44049 -16.23299 -15.56731 -15.20405 -15.06246 -14.73587 -14.23805 -14.01447 -13.97217 -13.65749 -13.50268 -13.27249 -13.21068 -12.93969 -12.89545 -12.69710 -12.51398 -12.45561 -12.02936 -11.77072 -11.70515 -11.40293 -11.30673 -11.06289 -10.89956 -10.28814 -9.70127 -8.32884 -6.45432 0.64525 1.03723 1.06587 1.40151 1.44992 1.49208 1.53447 1.67064 2.27065 2.34137 3.00925 3.04539 3.40102 3.46071 3.70262 3.89062 3.91484 4.09368 4.10839 4.21918 4.24890 4.40403 4.49043 4.53725 4.57506 4.60363 4.66676 4.82468 4.84004 4.92726 5.05137 5.15897 5.34656 5.53138 5.67442 5.93863 6.47841 6.58149 6.60713 6.77899 6.90729 7.26087 8.79105 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002484 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.873534 B =11269.941988 C =12276.539120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.282 3.718 4 N -0.317 5.317 5 N -0.459 5.459 6 C 0.179 3.821 7 C -0.123 4.123 8 C 0.474 3.526 9 O -0.532 6.532 10 O -0.359 6.359 11 C 0.077 3.923 12 C 0.052 3.948 13 O -0.409 6.409 14 C 0.207 3.793 15 C -0.551 4.551 16 H 0.061 0.939 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.265 1.265 23 C 0.626 3.374 24 O -0.598 6.598 25 H 0.086 0.914 26 H 0.132 0.868 27 H 0.071 0.929 28 H 0.290 0.710 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.055 0.945 37 H -0.007 1.007 38 H -0.011 1.011 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.823 9.132 18.505 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.015 4.015 4 N -0.138 5.138 5 N -0.279 5.279 6 C 0.057 3.943 7 C -0.162 4.162 8 C 0.318 3.682 9 O -0.422 6.422 10 O -0.275 6.275 11 C 0.004 3.996 12 C -0.024 4.024 13 O -0.329 6.329 14 C 0.133 3.867 15 C -0.589 4.589 16 H 0.079 0.921 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.190 1.190 23 C 0.325 3.675 24 O -0.475 6.475 25 H 0.105 0.895 26 H 0.150 0.850 27 H 0.090 0.910 28 H 0.305 0.695 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.010 0.990 38 H 0.006 0.994 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.858 8.550 18.721 28.599 hybrid contribution -0.175 -0.468 -0.665 0.832 sum -20.033 8.082 18.055 28.154 Atomic orbital electron populations 1.22184 0.71726 1.06123 1.04871 1.46192 1.10264 1.05930 1.66229 1.27176 0.84344 0.96158 0.93847 1.77100 1.20433 0.90288 1.25954 1.48934 1.05757 1.04291 1.68894 1.21070 0.84213 0.93973 0.95010 1.21691 0.93398 1.00867 1.00197 1.23625 0.85018 0.78236 0.81334 1.90650 1.63208 1.55021 1.33341 1.86587 1.42739 1.63481 1.34661 1.23239 0.84667 0.94949 0.96724 1.22663 0.99064 0.88711 0.92010 1.87858 1.84083 1.31529 1.29425 1.19877 0.91952 0.96796 0.78111 1.21355 1.43979 0.94135 0.99414 0.92110 1.25967 0.94908 1.01670 0.96681 1.70056 1.46241 1.29520 1.11046 0.85229 0.79015 0.77852 0.77294 1.19004 1.19896 1.18993 1.17134 0.82829 0.85575 0.81953 1.91057 1.78515 1.17258 1.60673 0.89546 0.85007 0.91036 0.69516 0.88523 0.87012 0.85807 0.86890 0.90597 0.87186 0.89863 0.92691 0.98954 0.99371 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.05 127.77 1.41 1.82 16 2 N -0.56 -7.14 3.14 -683.68 -2.15 -9.28 16 3 C 0.28 2.26 12.66 179.82 2.28 4.53 16 4 N -0.32 -5.39 12.53 -59.42 -0.74 -6.14 16 5 N -0.46 -10.07 3.63 -478.02 -1.73 -11.80 16 6 C 0.18 3.97 5.68 86.38 0.49 4.46 16 7 C -0.12 -2.84 6.14 29.85 0.18 -2.66 16 8 C 0.47 13.81 7.96 71.24 0.57 14.38 16 9 O -0.53 -16.91 15.73 21.97 0.35 -16.57 16 10 O -0.36 -12.06 10.19 -48.77 -0.50 -12.56 16 11 C 0.08 2.44 5.84 71.98 0.42 2.86 16 12 C 0.05 1.93 6.33 71.98 0.46 2.39 16 13 O -0.41 -20.35 10.30 -145.57 -1.50 -21.84 16 14 C 0.21 11.75 5.69 71.24 0.41 12.15 16 15 C -0.55 -33.20 9.43 25.60 0.24 -32.95 16 16 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 17 C 0.01 0.37 5.46 84.65 0.46 0.83 16 18 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 19 Si 0.98 44.46 29.54 68.60 2.03 46.48 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.63 14.68 8.60 178.99 1.54 16.22 16 24 O -0.60 -18.76 17.71 -4.74 -0.08 -18.84 16 25 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.13 -0.51 8.14 -2.39 -0.02 -0.52 16 27 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 28 H 0.29 -1.58 8.06 -2.91 -0.02 -1.60 16 29 H 0.10 2.28 8.07 -2.39 -0.02 2.26 16 30 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.08 2.43 8.13 -2.39 -0.02 2.41 16 34 H 0.11 2.79 8.13 -2.39 -0.02 2.77 16 35 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 36 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -85.27 352.03 5.46 -79.82 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.05 Total: 2.39 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 8.45 Total: 24.02 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -4.34 Total: -82.90 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -1.73 Total: -69.82 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -85.27 5.46 -79.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815271041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.859 kcal (2) G-P(sol) polarization free energy of solvation -85.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds