Wall clock time and date at job start Tue Mar 31 2020 04:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00156 * 2 1 4 4 O 1.20827 * 119.99664 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00282 * 180.02562 * 3 2 1 6 6 C 1.53001 * 110.01077 * 288.02073 * 5 3 2 7 7 C 1.54317 * 109.88804 * 166.90261 * 5 3 2 8 8 C 1.55150 * 103.17555 * 218.39900 * 7 5 3 9 9 H 1.08997 * 110.99036 * 277.47426 * 8 7 5 10 10 O 1.45199 * 110.98949 * 153.69733 * 8 7 5 11 11 C 1.34223 * 116.99945 * 149.99933 * 10 8 7 12 12 O 1.20819 * 120.00346 * 0.02562 * 11 10 8 13 13 C 1.50704 * 120.00121 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47418 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47255 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00075 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00117 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00327 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99799 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47260 * 90.00381 * 19 17 15 21 21 H 1.48502 * 109.46801 * 210.00382 * 19 17 15 22 22 H 1.48499 * 109.47152 * 330.00114 * 19 17 15 23 23 C 1.54903 * 101.65275 * 35.56808 * 8 7 5 24 24 N 1.47736 * 110.06473 * 49.21224 * 5 3 2 25 25 C 1.46896 * 110.86031 * 355.98605 * 24 5 3 26 26 H 1.08994 * 109.47578 * 59.99495 * 1 2 3 27 27 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46957 * 299.99343 * 1 2 3 29 29 H 1.08992 * 109.47412 * 298.88035 * 6 5 3 30 30 H 1.09002 * 109.46957 * 58.88697 * 6 5 3 31 31 H 1.09001 * 109.46600 * 178.88329 * 6 5 3 32 32 H 1.09003 * 110.70381 * 99.93500 * 7 5 3 33 33 H 1.08996 * 110.70636 * 336.87194 * 7 5 3 34 34 H 1.09006 * 109.46728 * 300.00171 * 13 11 10 35 35 H 1.08993 * 109.47398 * 59.99834 * 13 11 10 36 36 H 1.08994 * 109.46995 * 300.00171 * 14 13 11 37 37 H 1.09006 * 109.47116 * 59.99875 * 14 13 11 38 38 H 0.97000 * 120.00056 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.37138 * 81.75630 * 23 8 7 40 40 H 1.08993 * 110.37624 * 204.09991 * 23 8 7 41 41 H 1.09004 * 109.47469 * 167.67856 * 25 24 5 42 42 H 1.09004 * 109.47632 * 287.67713 * 25 24 5 43 43 H 1.09006 * 109.47422 * 47.67867 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1130 0.8579 1.3662 7 6 4.0164 2.7139 -0.3293 8 6 5.2627 2.4980 -1.2279 9 1 6.1519 2.3149 -0.6247 10 8 5.4645 3.6278 -2.1173 11 6 6.7283 3.9020 -2.4770 12 8 7.6358 3.2204 -2.0627 13 6 7.0153 5.0602 -3.3975 14 6 8.5220 5.1520 -3.6472 15 6 8.8090 6.3097 -4.5682 16 1 7.9978 6.9189 -4.9388 17 6 10.1070 6.5907 -4.9386 18 7 10.3574 7.6008 -5.7427 19 14 11.5100 5.5367 -4.2981 20 1 11.7498 4.4095 -5.2345 21 1 12.7401 6.3618 -4.1913 22 1 11.1555 5.0011 -2.9592 23 6 4.8601 1.2305 -2.0220 24 7 4.1195 0.3964 -1.0517 25 6 3.0507 -0.3611 -1.7163 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 3.7353 1.5363 2.1310 30 1 3.7912 -0.1589 1.5914 31 1 5.2021 0.8991 1.3498 32 1 4.2856 3.2508 0.5804 33 1 3.2367 3.2468 -0.8733 34 1 6.4990 4.9075 -4.3453 35 1 6.6658 5.9847 -2.9382 36 1 9.0386 5.3044 -2.6996 37 1 8.8712 4.2273 -4.1068 38 1 11.2707 7.7987 -6.0030 39 1 4.2178 1.4967 -2.8614 40 1 5.7479 0.7053 -2.3741 41 1 3.4441 -0.8289 -2.6189 42 1 2.6772 -1.1312 -1.0413 43 1 2.2377 0.3146 -1.9821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893569340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:58 Heat of formation + Delta-G solvation = -155.898409 kcal Electronic energy + Delta-G solvation = -24941.876293 eV Core-core repulsion = 21181.047967 eV Total energy + Delta-G solvation = -3760.828326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.72086 -40.25381 -38.74180 -37.00146 -36.16209 -33.64884 -32.60108 -31.67921 -31.08675 -28.17684 -26.87700 -26.61777 -25.23614 -23.36891 -22.53460 -21.15018 -20.10771 -19.86761 -18.02018 -17.77537 -17.35337 -16.93574 -16.52407 -15.90423 -15.72490 -15.30668 -14.91765 -14.60254 -14.15328 -13.95102 -13.79152 -13.67333 -13.17941 -13.04476 -12.93257 -12.80448 -12.60054 -12.51973 -12.08079 -12.02616 -11.84807 -11.69551 -11.50113 -11.10168 -11.03334 -11.00444 -10.82082 -10.46013 -10.31614 -10.19058 -9.95223 -9.72654 -9.27533 -8.89840 -8.56943 -6.08334 -4.08460 1.67760 2.15557 2.61116 2.79585 3.33517 3.40599 3.49422 3.50284 3.89163 4.17439 4.40082 4.45115 4.58853 4.68325 4.72979 4.76760 4.86288 4.96016 5.05365 5.10274 5.21635 5.26317 5.34138 5.35760 5.41705 5.53368 5.63928 5.69605 5.73867 5.83149 5.91878 5.96442 5.99660 6.30150 6.42308 6.49789 6.74776 7.21464 7.26125 7.28884 7.69095 8.14171 8.45403 8.93897 9.53254 11.04212 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.002765 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.330576 B =10122.652023 C =10316.887416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.460 3.540 4 O -0.497 6.497 5 C 0.109 3.891 6 C -0.130 4.130 7 C -0.125 4.125 8 C 0.077 3.923 9 H 0.107 0.893 10 O -0.350 6.350 11 C 0.458 3.542 12 O -0.506 6.506 13 C -0.095 4.095 14 C -0.002 4.002 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.261 1.261 23 C 0.023 3.977 24 N -0.504 5.504 25 C 0.015 3.985 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.026 0.974 37 H 0.021 0.979 38 H 0.264 0.736 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 -17.775 13.187 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.301 3.699 4 O -0.382 6.382 5 C 0.018 3.982 6 C -0.188 4.188 7 C -0.163 4.163 8 C 0.021 3.979 9 H 0.125 0.875 10 O -0.267 6.267 11 C 0.301 3.699 12 O -0.393 6.393 13 C -0.133 4.133 14 C -0.039 4.039 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.104 4.104 24 N -0.231 5.231 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -18.827 -17.965 13.457 29.296 hybrid contribution -0.028 0.054 -0.145 0.157 sum -18.854 -17.910 13.312 29.214 Atomic orbital electron populations 1.23312 0.76894 1.03843 1.02632 1.86821 1.23091 1.32678 1.83893 1.23968 0.92102 0.81673 0.72142 1.90694 1.66869 1.36344 1.44329 1.21960 0.85076 0.93953 0.97171 1.21818 1.02900 1.02370 0.91684 1.22903 0.97942 0.94180 1.01302 1.23644 0.98976 0.84497 0.90796 0.87497 1.86639 1.32021 1.47305 1.60782 1.24833 0.79619 0.85793 0.79607 1.90617 1.45735 1.50038 1.52907 1.21564 1.02165 0.92680 0.96889 1.19483 0.88599 0.97950 0.97886 1.21024 0.94323 1.12919 1.28276 0.90659 1.24960 0.98818 0.94930 0.94417 1.69903 1.20522 1.28643 1.34778 0.86798 0.81676 0.80522 0.80564 1.20157 1.21320 1.18568 1.23531 0.99545 0.92872 0.94484 1.63863 1.24328 1.23350 1.11568 1.23015 0.91701 0.98573 0.99976 0.91890 0.87900 0.91857 0.91559 0.90839 0.89873 0.88531 0.88296 0.88287 0.88212 0.95562 0.96021 0.92582 0.91832 0.88228 0.90880 0.88499 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 101.05 1.07 1.23 16 2 O -0.35 -2.98 6.81 -39.26 -0.27 -3.24 16 3 C 0.46 4.87 5.15 36.00 0.19 5.06 16 4 O -0.50 -6.51 15.32 -18.75 -0.29 -6.80 16 5 C 0.11 1.09 1.11 -131.60 -0.15 0.95 16 6 C -0.13 -1.05 8.69 37.16 0.32 -0.73 16 7 C -0.13 -1.41 5.45 -24.90 -0.14 -1.54 16 8 C 0.08 1.00 3.42 -24.59 -0.08 0.92 16 9 H 0.11 1.46 7.13 -51.93 -0.37 1.09 16 10 O -0.35 -5.45 10.04 -39.24 -0.39 -5.84 16 11 C 0.46 8.32 7.96 36.01 0.29 8.60 16 12 O -0.51 -10.42 15.18 -18.74 -0.28 -10.70 16 13 C -0.10 -1.84 5.75 -27.88 -0.16 -2.00 16 14 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 15 C -0.53 -14.79 9.66 -34.44 -0.33 -15.12 16 16 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 19 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 23 C 0.02 0.27 6.41 -2.30 -0.01 0.26 16 24 N -0.50 -5.15 5.08 -225.03 -1.14 -6.30 16 25 C 0.01 0.13 7.98 60.06 0.48 0.61 16 26 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.96 7.83 -51.93 -0.41 0.55 16 33 H 0.10 1.24 7.08 -51.93 -0.37 0.88 16 34 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 37 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.06 0.74 7.81 -51.93 -0.41 0.33 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 42 H 0.10 0.76 6.44 -51.93 -0.33 0.43 16 43 H 0.03 0.25 6.24 -51.93 -0.32 -0.07 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -33.12 350.38 -6.50 -39.62 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.78 Total: -2.69 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 1.28 Total: 0.05 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: -0.37 Total: -33.04 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.23 Total: -26.59 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.12 -6.50 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893569340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.280 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds