Wall clock time and date at job start Tue Mar 31 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00156 * 2 1 4 4 O 1.20827 * 119.99664 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00282 * 180.02562 * 3 2 1 6 6 C 1.53001 * 110.01077 * 288.02073 * 5 3 2 7 7 C 1.54317 * 109.88804 * 166.90261 * 5 3 2 8 8 C 1.55150 * 103.17555 * 218.39900 * 7 5 3 9 9 H 1.08997 * 110.99036 * 277.47426 * 8 7 5 10 10 O 1.45199 * 110.98949 * 153.69733 * 8 7 5 11 11 C 1.34223 * 116.99945 * 149.99933 * 10 8 7 12 12 O 1.20819 * 120.00346 * 0.02562 * 11 10 8 13 13 C 1.50704 * 120.00121 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47418 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47255 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00075 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00117 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00327 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99799 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47260 * 90.00381 * 19 17 15 21 21 H 1.48502 * 109.46801 * 210.00382 * 19 17 15 22 22 H 1.48499 * 109.47152 * 330.00114 * 19 17 15 23 23 C 1.54903 * 101.65275 * 35.56808 * 8 7 5 24 24 N 1.47736 * 110.06473 * 49.21224 * 5 3 2 25 25 C 1.46896 * 110.86031 * 355.98605 * 24 5 3 26 26 H 1.08994 * 109.47578 * 59.99495 * 1 2 3 27 27 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46957 * 299.99343 * 1 2 3 29 29 H 1.08992 * 109.47412 * 298.88035 * 6 5 3 30 30 H 1.09002 * 109.46957 * 58.88697 * 6 5 3 31 31 H 1.09001 * 109.46600 * 178.88329 * 6 5 3 32 32 H 1.09003 * 110.70381 * 99.93500 * 7 5 3 33 33 H 1.08996 * 110.70636 * 336.87194 * 7 5 3 34 34 H 1.09006 * 109.46728 * 300.00171 * 13 11 10 35 35 H 1.08993 * 109.47398 * 59.99834 * 13 11 10 36 36 H 1.08994 * 109.46995 * 300.00171 * 14 13 11 37 37 H 1.09006 * 109.47116 * 59.99875 * 14 13 11 38 38 H 0.97000 * 120.00056 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.37138 * 81.75630 * 23 8 7 40 40 H 1.08993 * 110.37624 * 204.09991 * 23 8 7 41 41 H 1.09004 * 109.47469 * 167.67856 * 25 24 5 42 42 H 1.09004 * 109.47632 * 287.67713 * 25 24 5 43 43 H 1.09006 * 109.47422 * 47.67867 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1130 0.8579 1.3662 7 6 4.0164 2.7139 -0.3293 8 6 5.2627 2.4980 -1.2279 9 1 6.1519 2.3149 -0.6247 10 8 5.4645 3.6278 -2.1173 11 6 6.7283 3.9020 -2.4770 12 8 7.6358 3.2204 -2.0627 13 6 7.0153 5.0602 -3.3975 14 6 8.5220 5.1520 -3.6472 15 6 8.8090 6.3097 -4.5682 16 1 7.9978 6.9189 -4.9388 17 6 10.1070 6.5907 -4.9386 18 7 10.3574 7.6008 -5.7427 19 14 11.5100 5.5367 -4.2981 20 1 11.7498 4.4095 -5.2345 21 1 12.7401 6.3618 -4.1913 22 1 11.1555 5.0011 -2.9592 23 6 4.8601 1.2305 -2.0220 24 7 4.1195 0.3964 -1.0517 25 6 3.0507 -0.3611 -1.7163 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 3.7353 1.5363 2.1310 30 1 3.7912 -0.1589 1.5914 31 1 5.2021 0.8991 1.3498 32 1 4.2856 3.2508 0.5804 33 1 3.2367 3.2468 -0.8733 34 1 6.4990 4.9075 -4.3453 35 1 6.6658 5.9847 -2.9382 36 1 9.0386 5.3044 -2.6996 37 1 8.8712 4.2273 -4.1068 38 1 11.2707 7.7987 -6.0030 39 1 4.2178 1.4967 -2.8614 40 1 5.7479 0.7053 -2.3741 41 1 3.4441 -0.8289 -2.6189 42 1 2.6772 -1.1312 -1.0413 43 1 2.2377 0.3146 -1.9821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893569340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:57 Heat of formation + Delta-G solvation = -177.238974 kcal Electronic energy + Delta-G solvation = -24942.801690 eV Core-core repulsion = 21181.047967 eV Total energy + Delta-G solvation = -3761.753722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.55471 -41.54595 -39.68214 -37.78627 -37.48727 -35.63340 -33.52118 -33.34648 -32.20857 -28.80769 -28.38455 -27.65619 -26.07825 -24.27872 -23.96627 -22.42909 -21.44626 -20.86714 -19.45000 -18.87989 -18.48152 -18.09713 -17.56026 -17.29365 -16.82433 -16.40467 -16.14810 -15.83421 -15.50607 -15.02177 -14.76826 -14.71274 -14.52781 -14.18899 -14.12629 -13.87985 -13.51503 -13.41419 -13.23197 -13.15356 -12.91142 -12.78048 -12.63093 -12.39727 -12.25815 -12.07111 -12.01572 -11.81496 -11.72479 -11.67382 -11.50071 -11.43722 -11.34942 -10.78347 -9.71479 -8.31302 -6.35808 0.87259 1.16321 1.33754 1.35768 1.38023 1.51432 1.69490 2.35349 2.63247 3.04199 3.07102 3.24615 3.60761 3.68086 3.76465 3.94587 4.05381 4.19050 4.27902 4.29388 4.30931 4.33194 4.38223 4.50465 4.58339 4.65216 4.67984 4.73466 4.74105 4.81582 4.88828 5.02555 5.16624 5.23446 5.25973 5.35779 5.36843 5.52571 5.59173 5.67539 6.21515 6.49565 6.68141 6.77237 7.29426 8.84274 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.002765 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.330576 B =10122.652023 C =10316.887416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.345 6.345 3 C 0.464 3.536 4 O -0.528 6.528 5 C 0.108 3.892 6 C -0.128 4.128 7 C -0.121 4.121 8 C 0.071 3.929 9 H 0.103 0.897 10 O -0.346 6.346 11 C 0.470 3.530 12 O -0.532 6.532 13 C -0.092 4.092 14 C 0.003 3.997 15 C -0.532 4.532 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.256 1.256 23 C 0.027 3.973 24 N -0.503 5.503 25 C 0.015 3.985 26 H 0.058 0.942 27 H 0.135 0.865 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.268 0.732 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.949 -19.861 14.469 31.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.261 6.261 3 C 0.307 3.693 4 O -0.415 6.415 5 C 0.017 3.983 6 C -0.185 4.185 7 C -0.159 4.159 8 C 0.015 3.985 9 H 0.121 0.879 10 O -0.263 6.263 11 C 0.315 3.685 12 O -0.421 6.421 13 C -0.130 4.130 14 C -0.035 4.035 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.180 1.180 23 C -0.101 4.101 24 N -0.230 5.230 25 C -0.132 4.132 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -19.492 -20.077 14.746 31.630 hybrid contribution 0.009 0.688 -0.548 0.879 sum -19.483 -19.390 14.198 30.938 Atomic orbital electron populations 1.23590 0.75309 1.05934 1.02396 1.86801 1.24582 1.31438 1.83257 1.24028 0.92227 0.81774 0.71320 1.90685 1.67511 1.37397 1.45952 1.22037 0.85058 0.93052 0.98135 1.21839 1.02918 1.03158 0.90587 1.22888 0.96525 0.95279 1.01226 1.23887 0.99610 0.84174 0.90807 0.87877 1.86594 1.30227 1.48367 1.61081 1.24354 0.80084 0.85029 0.79020 1.90610 1.46654 1.50874 1.53937 1.21354 0.99149 0.94128 0.98331 1.19320 0.91953 0.95909 0.96310 1.21341 0.93716 1.13566 1.28383 0.93209 1.25830 1.01688 0.96195 0.94762 1.70026 1.21356 1.30522 1.36445 0.85797 0.78554 0.79002 0.80197 1.19215 1.20573 1.17974 1.23471 0.99687 0.92337 0.94618 1.63939 1.24860 1.22885 1.11287 1.23076 0.91074 0.98419 1.00628 0.92360 0.84658 0.91925 0.90564 0.89890 0.89734 0.87286 0.89708 0.86878 0.86912 0.96282 0.96368 0.92307 0.91943 0.88462 0.89936 0.87343 0.96268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.56 113.37 1.20 1.40 16 2 O -0.35 -5.19 6.81 -51.41 -0.35 -5.54 16 3 C 0.46 9.17 5.15 71.24 0.37 9.54 16 4 O -0.53 -13.43 15.32 21.96 0.34 -13.09 16 5 C 0.11 1.99 1.11 3.07 0.00 1.99 16 6 C -0.13 -1.78 8.69 71.98 0.63 -1.16 16 7 C -0.12 -2.58 5.45 31.78 0.17 -2.41 16 8 C 0.07 1.76 3.42 31.98 0.11 1.87 16 9 H 0.10 2.70 7.13 -2.39 -0.02 2.68 16 10 O -0.35 -10.38 10.04 -51.35 -0.52 -10.89 16 11 C 0.47 16.55 7.96 71.24 0.57 17.12 16 12 O -0.53 -21.31 15.18 21.98 0.33 -20.97 16 13 C -0.09 -3.46 5.75 29.85 0.17 -3.29 16 14 C 0.00 0.13 3.33 29.85 0.10 0.23 16 15 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 16 H 0.05 2.99 7.99 -2.91 -0.02 2.96 16 17 C 0.01 0.76 5.47 84.65 0.46 1.23 16 18 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 19 Si 0.94 45.24 27.47 68.60 1.88 47.12 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 23 C 0.03 0.59 6.41 86.77 0.56 1.15 16 24 N -0.50 -9.40 5.08 -865.86 -4.40 -13.80 16 25 C 0.01 0.23 7.98 127.69 1.02 1.25 16 26 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 27 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 2.02 7.83 -2.39 -0.02 2.00 16 33 H 0.08 2.08 7.08 -2.39 -0.02 2.07 16 34 H 0.11 3.91 8.14 -2.38 -0.02 3.89 16 35 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.02 0.92 7.16 -2.39 -0.02 0.91 16 37 H 0.02 0.87 7.53 -2.38 -0.02 0.85 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.06 1.38 7.81 -2.39 -0.02 1.36 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 1.12 8.04 -2.39 -0.02 1.10 16 42 H 0.11 1.43 6.44 -2.39 -0.02 1.42 16 43 H 0.02 0.33 6.24 -2.38 -0.01 0.31 16 Total: -1.00 -70.54 350.38 4.12 -66.42 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.94 Total: 9.74 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.60 Total: -0.88 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -4.10 Total: -71.91 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.20 Total: -50.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -70.54 4.12 -66.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893569340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.819 kcal (2) G-P(sol) polarization free energy of solvation -70.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds