Wall clock time and date at job start Tue Mar 31 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39733 * 119.59242 * 342.13494 * 3 2 1 5 5 C 1.37971 * 119.20055 * 179.97438 * 4 3 2 6 6 C 1.40239 * 118.40166 * 0.02562 * 5 4 3 7 7 C 1.47673 * 120.44077 * 180.02562 * 6 5 4 8 8 O 1.21579 * 120.00280 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99849 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99879 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46874 * 325.00098 * 10 9 7 12 12 C 1.53002 * 109.47050 * 84.99672 * 10 9 7 13 13 C 1.53000 * 109.47159 * 204.99667 * 10 9 7 14 14 C 1.53945 * 113.74185 * 161.82133 * 13 10 9 15 15 N 1.47813 * 86.03613 * 222.08914 * 14 13 10 16 16 C 1.36940 * 134.45535 * 204.64682 * 15 14 13 17 17 H 1.07993 * 120.00353 * 179.86211 * 16 15 14 18 18 C 1.38820 * 119.99785 * 359.86260 * 16 15 14 19 19 N 1.31615 * 120.00175 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99764 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47231 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46994 * 120.00155 * 20 18 16 23 23 H 1.48497 * 109.46796 * 240.00029 * 20 18 16 24 24 C 1.47582 * 91.05312 * 24.55126 * 15 14 13 25 25 C 1.39654 * 119.11946 * 359.97438 * 6 5 4 26 26 N 1.31481 * 120.71252 * 0.02562 * 25 6 5 27 27 H 4.51259 * 14.17655 * 359.97438 * 4 2 1 28 28 H 1.07995 * 120.39682 * 0.26129 * 4 3 2 29 29 H 1.08001 * 120.79792 * 180.02562 * 5 4 3 30 30 H 0.96993 * 120.00353 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.46820 * 180.02562 * 12 10 9 32 32 H 1.08996 * 109.47287 * 300.07133 * 12 10 9 33 33 H 1.09002 * 109.46605 * 60.07529 * 12 10 9 34 34 H 1.08997 * 112.94396 * 293.41457 * 13 10 9 35 35 H 1.09002 * 113.77026 * 336.34985 * 14 13 10 36 36 H 1.08998 * 113.77194 * 107.74895 * 14 13 10 37 37 H 0.96999 * 120.00039 * 179.97438 * 19 18 16 38 38 H 1.08996 * 113.76528 * 221.15393 * 24 15 14 39 39 H 1.08997 * 113.87312 * 89.76968 * 24 15 14 40 40 H 1.08003 * 119.64860 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2965 -1.1555 0.3728 5 6 4.6762 -1.1461 0.3693 6 6 5.3343 0.0326 -0.0105 7 6 6.8096 0.0926 -0.0308 8 8 7.4621 -0.8840 0.2836 9 7 7.4329 1.2299 -0.3978 10 6 8.8966 1.2895 -0.4173 11 1 9.2958 0.6848 0.3970 12 6 9.4112 0.7495 -1.7532 13 6 9.3502 2.7405 -0.2450 14 6 10.8205 2.8829 0.1887 15 7 10.3404 3.9367 1.1073 16 6 10.9181 5.0266 1.7020 17 1 10.3328 5.6615 2.3505 18 6 12.2561 5.3154 1.4712 19 7 12.9694 4.5420 0.6804 20 14 13.0443 6.8018 2.2830 21 1 12.0361 7.5021 3.1187 22 1 14.1736 6.3576 3.1389 23 1 13.5499 7.7269 1.2372 24 6 8.9888 3.3443 1.1243 25 6 4.5758 1.1487 -0.3703 26 7 3.2619 1.1011 -0.3546 27 1 -1.0499 -0.0008 0.0008 28 1 2.7568 -2.0471 0.6556 29 1 5.2359 -2.0253 0.6524 30 1 6.9124 2.0088 -0.6489 31 1 10.5002 0.7935 -1.7676 32 1 9.0869 -0.2838 -1.8766 33 1 9.0130 1.3550 -2.5674 34 1 9.0785 3.3738 -1.0895 35 1 11.2157 2.0034 0.6972 36 1 11.4773 3.2511 -0.5994 37 1 13.9043 4.7441 0.5189 38 1 8.1861 4.0804 1.0817 39 1 8.8429 2.6007 1.9077 40 1 5.0738 2.0610 -0.6638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970767588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:59 Heat of formation + Delta-G solvation = 88.692311 kcal Electronic energy + Delta-G solvation = -22753.398255 eV Core-core repulsion = 19342.777849 eV Total energy + Delta-G solvation = -3410.620406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78379 -40.58264 -39.49334 -36.27900 -35.01018 -34.16022 -33.63420 -32.56381 -31.01388 -29.32000 -26.79229 -26.16761 -25.54186 -24.70914 -23.04280 -21.73429 -20.90100 -20.38016 -18.92322 -18.70600 -17.97275 -17.01508 -16.90594 -16.68771 -16.21076 -16.03130 -15.80079 -15.33390 -15.13809 -14.83245 -14.63638 -14.27510 -14.08311 -13.66458 -13.40864 -13.26625 -13.07183 -12.95980 -12.70014 -12.38636 -12.29892 -12.00508 -11.89563 -11.80385 -11.60981 -11.25605 -11.16425 -11.07837 -10.87690 -10.60228 -10.19116 -9.87724 -8.91787 -7.90854 -5.24017 -0.77223 0.10735 1.43110 1.45435 1.46510 1.56628 1.62869 2.01966 2.18118 2.47138 2.88588 2.92926 3.29698 3.38743 3.48392 3.60178 3.71553 3.80284 3.96931 3.97127 4.05551 4.27747 4.45128 4.51491 4.58610 4.69937 4.78143 4.84128 4.87536 4.93402 4.97558 5.03556 5.11008 5.25940 5.32614 5.41618 5.48374 5.55333 5.66072 5.94574 6.45099 6.48481 6.66141 6.92524 7.13597 7.60821 8.56446 9.26361 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.002738 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.529939 B =10225.041139 C =10951.646845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.217 4.217 3 C 0.236 3.764 4 C -0.147 4.147 5 C -0.017 4.017 6 C -0.190 4.190 7 C 0.565 3.435 8 O -0.573 6.573 9 N -0.700 5.700 10 C 0.162 3.838 11 H 0.065 0.935 12 C -0.152 4.152 13 C -0.109 4.109 14 C 0.171 3.829 15 N -0.645 5.645 16 C -0.234 4.234 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.289 1.289 24 C 0.126 3.874 25 C 0.146 3.854 26 N -0.497 5.497 27 H 0.272 0.728 28 H 0.173 0.827 29 H 0.159 0.841 30 H 0.413 0.587 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.012 0.988 36 H 0.047 0.953 37 H 0.249 0.751 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.012 -11.148 -4.903 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.218 4.218 3 C 0.101 3.899 4 C -0.167 4.167 5 C -0.043 4.043 6 C -0.195 4.195 7 C 0.352 3.648 8 O -0.453 6.453 9 N -0.351 5.351 10 C 0.057 3.943 11 H 0.084 0.916 12 C -0.211 4.211 13 C -0.129 4.129 14 C 0.045 3.955 15 N -0.371 5.371 16 C -0.362 4.362 17 H 0.101 0.899 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.216 1.216 24 C 0.001 3.999 25 C -0.013 4.013 26 N -0.206 5.206 27 H 0.288 0.712 28 H 0.190 0.810 29 H 0.177 0.823 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.743 -10.842 -4.837 26.545 hybrid contribution 1.316 0.322 0.758 1.552 sum -22.427 -10.520 -4.078 25.105 Atomic orbital electron populations 1.25994 0.96341 0.94896 0.93252 1.19641 0.91602 1.04946 1.05602 1.17131 0.89219 0.89815 0.93702 1.22257 0.93904 0.99644 1.00865 1.21862 0.94113 0.97482 0.90797 1.21051 0.93532 0.97541 1.07376 1.18183 0.87173 0.82968 0.76466 1.90776 1.67665 1.36646 1.50224 1.45856 1.07439 1.14383 1.67444 1.20820 0.79026 0.95570 0.98852 0.91643 1.22052 1.01724 1.00953 0.96340 1.23473 0.97081 0.94280 0.98085 1.22138 0.93022 0.88776 0.91589 1.46435 1.08886 1.26483 1.55321 1.19458 0.93753 1.00907 1.22102 0.89946 1.25635 0.96942 1.02204 1.01406 1.69997 1.07700 1.40727 1.41813 0.85013 0.78117 0.78689 0.77531 1.18988 1.22179 1.21632 1.22700 0.88120 0.94642 0.94457 1.23266 0.88439 0.97722 0.91918 1.67798 1.10179 1.27467 1.15149 0.71242 0.80970 0.82314 0.74925 0.91680 0.92746 0.90654 0.87398 0.96993 0.93441 0.94231 0.91943 0.94966 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 19.25 74.32 1.43 0.56 16 2 C -0.22 -3.73 13.43 30.01 0.40 -3.32 16 3 C 0.24 4.71 6.59 40.58 0.27 4.98 16 4 C -0.15 -2.37 9.77 22.57 0.22 -2.15 16 5 C -0.02 -0.31 9.70 22.69 0.22 -0.09 16 6 C -0.19 -4.00 5.89 -19.96 -0.12 -4.12 16 7 C 0.56 14.58 7.74 86.74 0.67 15.25 16 8 O -0.57 -19.04 16.07 -3.96 -0.06 -19.11 16 9 N -0.70 -16.23 4.90 -445.55 -2.18 -18.41 16 10 C 0.16 4.68 2.29 44.99 0.10 4.78 16 11 H 0.07 2.27 7.48 -2.39 -0.02 2.25 16 12 C -0.15 -3.95 9.44 71.98 0.68 -3.27 16 13 C -0.11 -3.69 3.35 -10.13 -0.03 -3.72 16 14 C 0.17 7.96 6.98 86.44 0.60 8.57 16 15 N -0.64 -33.02 3.70 -716.11 -2.65 -35.67 16 16 C -0.23 -13.21 10.70 84.03 0.90 -12.31 16 17 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 19 N -0.95 -57.82 11.39 21.65 0.25 -57.58 16 20 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 C 0.13 4.85 8.38 86.49 0.72 5.58 16 25 C 0.15 2.79 10.70 85.09 0.91 3.70 16 26 N -0.50 -10.97 10.26 -188.03 -1.93 -12.90 16 27 H 0.27 -0.09 7.80 -4.42 -0.03 -0.12 16 28 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 29 H 0.16 2.75 7.73 -2.91 -0.02 2.73 16 30 H 0.41 7.11 6.65 -92.71 -0.62 6.50 16 31 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 36 H 0.05 2.47 7.16 -2.39 -0.02 2.45 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 40 H 0.19 2.49 6.40 -2.91 -0.02 2.47 16 Total: -1.00 -76.71 351.13 3.34 -73.37 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.44 Total: 11.29 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 7.45 Total: 10.93 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -6.52 Total: -124.56 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.71 3.34 -73.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970767588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.063 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds