Wall clock time and date at job start Tue Mar 31 2020 03:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39989 * 120.46167 * 326.01952 * 3 2 1 5 5 C 1.38223 * 118.36748 * 180.02562 * 4 3 2 6 6 C 1.39495 * 119.20577 * 359.97438 * 5 4 3 7 7 C 1.47983 * 119.56945 * 179.97438 * 6 5 4 8 8 O 1.21542 * 120.00226 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.47424 * 125.64675 * 0.03574 * 9 7 6 11 11 C 1.54910 * 104.83272 * 204.09865 * 10 9 7 12 12 C 1.55151 * 101.58227 * 322.98547 * 11 10 9 13 13 H 1.08997 * 110.87831 * 277.07544 * 12 11 10 14 14 N 1.46499 * 110.71986 * 153.86598 * 12 11 10 15 15 C 1.46504 * 119.99903 * 305.02634 * 14 12 11 16 16 C 1.36933 * 120.00116 * 125.02970 * 14 12 11 17 17 H 1.08002 * 119.99612 * 334.74406 * 16 14 12 18 18 C 1.38815 * 120.00325 * 154.74051 * 16 14 12 19 19 N 1.31622 * 119.99508 * 4.29032 * 18 16 14 20 20 Si 1.86797 * 120.00036 * 184.28747 * 18 16 14 21 21 H 1.48502 * 109.46887 * 85.00282 * 20 18 16 22 22 H 1.48494 * 109.47106 * 205.00158 * 20 18 16 23 23 H 1.48498 * 109.47139 * 325.00161 * 20 18 16 24 24 C 1.47023 * 125.65218 * 179.97438 * 9 7 6 25 25 N 1.32826 * 120.85707 * 0.25799 * 6 5 4 26 26 C 1.31286 * 121.78944 * 359.47089 * 25 6 5 27 27 H 4.52936 * 13.94787 * 359.97438 * 4 2 1 28 28 H 1.07999 * 120.82008 * 0.04014 * 4 3 2 29 29 H 1.07995 * 120.39628 * 180.02562 * 5 4 3 30 30 H 1.09002 * 110.36502 * 322.93519 * 10 9 7 31 31 H 1.09001 * 110.36687 * 85.14290 * 10 9 7 32 32 H 1.09003 * 111.00188 * 204.91623 * 11 10 9 33 33 H 1.09001 * 111.00549 * 81.06663 * 11 10 9 34 34 H 1.09002 * 109.47421 * 264.50872 * 15 14 12 35 35 H 1.09002 * 109.47415 * 24.50892 * 15 14 12 36 36 H 1.09004 * 109.46808 * 144.51152 * 15 14 12 37 37 H 0.97005 * 119.99235 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.88274 * 59.55582 * 24 9 7 39 39 H 1.08994 * 109.87873 * 298.38996 * 24 9 7 40 40 H 1.08004 * 119.65126 * 180.24864 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.9996 0.6744 5 6 4.6974 -0.9568 0.6466 6 6 5.3327 0.0731 -0.0474 7 6 6.8111 0.1270 -0.0819 8 8 7.4638 -0.7223 0.4925 9 7 7.4339 1.1185 -0.7493 10 6 6.7686 2.2094 -1.4845 11 6 7.8097 2.6733 -2.5336 12 6 9.1347 2.5404 -1.7374 13 1 9.3036 3.4190 -1.1149 14 7 10.2649 2.3248 -2.6443 15 6 10.2348 1.2163 -3.6016 16 6 11.3494 3.1595 -2.5971 17 1 11.2388 4.1682 -2.2274 18 6 12.5910 2.7091 -3.0243 19 7 12.7097 1.5096 -3.5531 20 14 14.0933 3.8053 -2.8489 21 1 14.6638 3.6489 -1.4868 22 1 15.1101 3.4171 -3.8590 23 1 13.7002 5.2215 -3.0612 24 6 8.8894 1.2920 -0.8638 25 7 4.6278 1.0091 -0.6729 26 6 3.3149 1.0008 -0.6745 27 1 -1.0500 -0.0005 0.0009 28 1 2.7975 -1.7856 1.2032 29 1 5.2778 -1.7122 1.1554 30 1 5.8700 1.8406 -1.9792 31 1 6.5196 3.0266 -0.8074 32 1 7.6331 3.7078 -2.8283 33 1 7.8084 2.0155 -3.4028 34 1 10.7558 0.3571 -3.1791 35 1 9.2001 0.9461 -3.8123 36 1 10.7263 1.5208 -4.5256 37 1 13.5774 1.1948 -3.8513 38 1 9.3311 0.4154 -1.3379 39 1 9.3239 1.4399 0.1247 40 1 2.7763 1.7770 -1.1978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972750941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:56 Heat of formation + Delta-G solvation = 102.894165 kcal Electronic energy + Delta-G solvation = -23287.045737 eV Core-core repulsion = 19877.041170 eV Total energy + Delta-G solvation = -3410.004567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84695 -39.18686 -37.35488 -34.91051 -34.56270 -32.58111 -31.69666 -30.87707 -29.61194 -27.88682 -26.03306 -25.42040 -23.90170 -23.19591 -22.20193 -20.06166 -19.50149 -19.11543 -17.37761 -17.09986 -16.86025 -15.97325 -15.80956 -15.41420 -14.93928 -14.77493 -14.32986 -13.80022 -13.62562 -13.34389 -13.20959 -12.94895 -12.56718 -12.32237 -12.12919 -11.91756 -11.74003 -11.49579 -11.18223 -10.84807 -10.78966 -10.54034 -10.32786 -10.27138 -10.18143 -10.14452 -9.83616 -9.75713 -9.42116 -9.12672 -8.51492 -8.22958 -6.76562 -5.74888 -3.22736 0.07177 0.89163 2.24889 2.30972 3.08077 3.11883 3.38958 3.44620 3.45483 3.70521 3.75375 3.99378 4.41759 4.46423 4.52233 4.76258 4.86727 5.17837 5.28296 5.33617 5.42571 5.50787 5.57059 5.70633 5.75852 5.77494 5.96107 6.00989 6.14620 6.29366 6.41949 6.48962 6.63949 6.71083 6.89834 6.94607 7.01971 7.42485 7.49393 7.76727 7.80511 7.86263 8.30341 8.40479 9.23509 9.83745 10.33858 11.29217 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.002911 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.343257 B = 9617.199444 C = 9965.843389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.153 4.153 3 C -0.027 4.027 4 C -0.059 4.059 5 C -0.111 4.111 6 C 0.100 3.900 7 C 0.571 3.429 8 O -0.540 6.540 9 N -0.587 5.587 10 C 0.105 3.895 11 C -0.158 4.158 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.590 5.590 15 C 0.163 3.837 16 C -0.260 4.260 17 H 0.071 0.929 18 C 0.007 3.993 19 N -0.906 5.906 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.085 3.915 25 N -0.447 5.447 26 C 0.122 3.878 27 H 0.227 0.773 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.025 0.975 35 H -0.004 1.004 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.327 -1.999 5.983 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C -0.030 4.030 4 C -0.084 4.084 5 C -0.132 4.132 6 C -0.038 4.038 7 C 0.357 3.643 8 O -0.418 6.418 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.198 4.198 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.310 5.310 15 C 0.019 3.981 16 C -0.389 4.389 17 H 0.088 0.912 18 C -0.192 4.192 19 N -0.551 5.551 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.040 4.040 25 N -0.158 5.158 26 C -0.038 4.038 27 H 0.244 0.756 28 H 0.163 0.837 29 H 0.172 0.828 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.269 -1.924 5.773 23.086 hybrid contribution 0.181 -0.196 0.566 0.625 sum -22.088 -2.120 6.338 23.077 Atomic orbital electron populations 1.24948 0.95742 0.98472 0.98421 1.19694 0.91583 1.02042 1.02008 1.17158 0.87975 0.97458 1.00387 1.21660 0.93467 0.97122 0.96185 1.22067 0.94391 0.98770 0.97959 1.21425 0.94666 0.92239 0.95463 1.17454 0.85329 0.81541 0.79938 1.90797 1.65760 1.39167 1.46045 1.48397 1.08843 1.25344 1.49238 1.22646 0.96724 0.88710 0.93747 1.23425 0.96284 1.01600 0.98474 1.21371 0.87737 0.94273 0.90376 0.90365 1.43906 1.16835 1.33532 1.36775 1.20888 0.93442 0.90249 0.93483 1.19216 0.86159 0.93347 1.40180 0.91170 1.25199 0.97664 0.96161 1.00153 1.70100 1.23175 1.17709 1.44102 0.86250 0.82849 0.79748 0.77549 1.21264 1.21688 1.20549 1.23014 0.77835 1.02114 1.01002 1.67966 1.07689 1.23868 1.16229 1.23062 0.89365 0.96210 0.95173 0.75630 0.83722 0.82757 0.88467 0.91831 0.90536 0.90588 0.95642 0.98574 0.92659 0.93603 0.90691 0.91963 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 19.25 29.55 0.57 -0.40 16 2 C -0.15 -1.27 13.28 -38.84 -0.52 -1.79 16 3 C -0.03 -0.26 5.75 -106.69 -0.61 -0.87 16 4 C -0.06 -0.53 9.89 -38.93 -0.39 -0.92 16 5 C -0.11 -1.26 9.61 -39.12 -0.38 -1.64 16 6 C 0.10 1.39 6.72 -82.97 -0.56 0.83 16 7 C 0.57 9.98 7.83 -12.27 -0.10 9.88 16 8 O -0.54 -10.93 16.63 5.33 0.09 -10.84 16 9 N -0.59 -10.28 3.33 -171.57 -0.57 -10.85 16 10 C 0.10 1.55 5.93 -2.53 -0.01 1.54 16 11 C -0.16 -2.63 6.59 -24.59 -0.16 -2.79 16 12 C 0.17 3.49 3.44 -66.10 -0.23 3.26 16 13 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 14 N -0.59 -14.59 2.94 -171.38 -0.50 -15.10 16 15 C 0.16 4.06 7.70 59.85 0.46 4.52 16 16 C -0.26 -7.01 9.61 -15.06 -0.14 -7.16 16 17 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 18 C 0.01 0.19 5.38 -17.43 -0.09 0.09 16 19 N -0.91 -26.27 10.11 55.49 0.56 -25.71 16 20 Si 0.91 21.69 29.56 -169.99 -5.02 16.66 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.08 1.69 6.51 -3.06 -0.02 1.67 16 25 N -0.45 -5.55 6.56 -9.49 -0.06 -5.61 16 26 C 0.12 1.20 10.91 -17.15 -0.19 1.01 16 27 H 0.23 0.50 7.80 -54.09 -0.42 0.07 16 28 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.15 1.67 7.63 -52.49 -0.40 1.27 16 30 H 0.10 1.35 5.88 -51.93 -0.31 1.04 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.36 6.14 -51.93 -0.32 1.04 16 34 H 0.03 0.69 7.38 -51.93 -0.38 0.30 16 35 H 0.00 -0.09 6.13 -51.93 -0.32 -0.41 16 36 H 0.05 1.48 7.02 -51.93 -0.36 1.12 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.07 1.70 7.07 -51.93 -0.37 1.33 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -32.15 338.53 -7.73 -39.88 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.95 Total: -0.76 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.36 Total: 7.24 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.58 Total: -57.28 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.15 -7.73 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972750941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.772 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds