Wall clock time and date at job start Tue Mar 31 2020 03:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39989 * 120.46167 * 326.01952 * 3 2 1 5 5 C 1.38223 * 118.36748 * 180.02562 * 4 3 2 6 6 C 1.39495 * 119.20577 * 359.97438 * 5 4 3 7 7 C 1.47983 * 119.56945 * 179.97438 * 6 5 4 8 8 O 1.21542 * 120.00226 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.47424 * 125.64675 * 0.03574 * 9 7 6 11 11 C 1.54910 * 104.83272 * 204.09865 * 10 9 7 12 12 C 1.55151 * 101.58227 * 322.98547 * 11 10 9 13 13 H 1.08997 * 110.87831 * 277.07544 * 12 11 10 14 14 N 1.46499 * 110.71986 * 153.86598 * 12 11 10 15 15 C 1.46504 * 119.99903 * 305.02634 * 14 12 11 16 16 C 1.36933 * 120.00116 * 125.02970 * 14 12 11 17 17 H 1.08002 * 119.99612 * 334.74406 * 16 14 12 18 18 C 1.38815 * 120.00325 * 154.74051 * 16 14 12 19 19 N 1.31622 * 119.99508 * 4.29032 * 18 16 14 20 20 Si 1.86797 * 120.00036 * 184.28747 * 18 16 14 21 21 H 1.48502 * 109.46887 * 85.00282 * 20 18 16 22 22 H 1.48494 * 109.47106 * 205.00158 * 20 18 16 23 23 H 1.48498 * 109.47139 * 325.00161 * 20 18 16 24 24 C 1.47023 * 125.65218 * 179.97438 * 9 7 6 25 25 N 1.32826 * 120.85707 * 0.25799 * 6 5 4 26 26 C 1.31286 * 121.78944 * 359.47089 * 25 6 5 27 27 H 4.52936 * 13.94787 * 359.97438 * 4 2 1 28 28 H 1.07999 * 120.82008 * 0.04014 * 4 3 2 29 29 H 1.07995 * 120.39628 * 180.02562 * 5 4 3 30 30 H 1.09002 * 110.36502 * 322.93519 * 10 9 7 31 31 H 1.09001 * 110.36687 * 85.14290 * 10 9 7 32 32 H 1.09003 * 111.00188 * 204.91623 * 11 10 9 33 33 H 1.09001 * 111.00549 * 81.06663 * 11 10 9 34 34 H 1.09002 * 109.47421 * 264.50872 * 15 14 12 35 35 H 1.09002 * 109.47415 * 24.50892 * 15 14 12 36 36 H 1.09004 * 109.46808 * 144.51152 * 15 14 12 37 37 H 0.97005 * 119.99235 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.88274 * 59.55582 * 24 9 7 39 39 H 1.08994 * 109.87873 * 298.38996 * 24 9 7 40 40 H 1.08004 * 119.65126 * 180.24864 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.9996 0.6744 5 6 4.6974 -0.9568 0.6466 6 6 5.3327 0.0731 -0.0474 7 6 6.8111 0.1270 -0.0819 8 8 7.4638 -0.7223 0.4925 9 7 7.4339 1.1185 -0.7493 10 6 6.7686 2.2094 -1.4845 11 6 7.8097 2.6733 -2.5336 12 6 9.1347 2.5404 -1.7374 13 1 9.3036 3.4190 -1.1149 14 7 10.2649 2.3248 -2.6443 15 6 10.2348 1.2163 -3.6016 16 6 11.3494 3.1595 -2.5971 17 1 11.2388 4.1682 -2.2274 18 6 12.5910 2.7091 -3.0243 19 7 12.7097 1.5096 -3.5531 20 14 14.0933 3.8053 -2.8489 21 1 14.6638 3.6489 -1.4868 22 1 15.1101 3.4171 -3.8590 23 1 13.7002 5.2215 -3.0612 24 6 8.8894 1.2920 -0.8638 25 7 4.6278 1.0091 -0.6729 26 6 3.3149 1.0008 -0.6745 27 1 -1.0500 -0.0005 0.0009 28 1 2.7975 -1.7856 1.2032 29 1 5.2778 -1.7122 1.1554 30 1 5.8700 1.8406 -1.9792 31 1 6.5196 3.0266 -0.8074 32 1 7.6331 3.7078 -2.8283 33 1 7.8084 2.0155 -3.4028 34 1 10.7558 0.3571 -3.1791 35 1 9.2001 0.9461 -3.8123 36 1 10.7263 1.5208 -4.5256 37 1 13.5774 1.1948 -3.8513 38 1 9.3311 0.4154 -1.3379 39 1 9.3239 1.4399 0.1247 40 1 2.7763 1.7770 -1.1978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972750941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:56 Heat of formation + Delta-G solvation = 83.657487 kcal Electronic energy + Delta-G solvation = -23287.879902 eV Core-core repulsion = 19877.041170 eV Total energy + Delta-G solvation = -3410.838732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.86121 -40.43279 -38.88742 -36.60234 -35.37167 -33.57303 -33.24965 -31.86515 -31.10872 -29.42085 -28.08935 -26.56026 -24.84716 -24.60385 -23.70617 -21.32060 -20.76710 -20.10373 -18.98547 -18.59744 -17.91896 -17.39408 -16.74045 -16.60668 -16.51391 -15.91656 -15.56028 -15.09897 -15.00607 -14.80527 -14.49230 -14.21978 -14.12115 -13.90074 -13.43834 -13.25254 -13.08515 -12.73375 -12.61132 -12.51658 -12.38185 -12.21323 -12.08936 -11.90489 -11.74991 -11.46285 -11.33934 -10.93010 -10.62142 -10.42614 -9.94425 -9.61368 -8.78988 -7.84651 -5.34687 -0.77397 0.12794 1.37026 1.47544 1.49969 1.57660 1.72728 1.82316 2.19206 2.50126 2.90024 2.91719 3.25937 3.29318 3.56882 3.59933 3.76312 3.89189 3.92296 4.02429 4.11834 4.30282 4.41082 4.48336 4.64787 4.69837 4.78091 4.82764 4.91387 5.00441 5.08518 5.11680 5.21136 5.25826 5.35778 5.45182 5.51279 5.64887 5.75690 6.32856 6.40472 6.50861 6.60657 6.97571 7.14611 7.83292 8.29606 9.18815 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.002911 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.343257 B = 9617.199444 C = 9965.843389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.208 4.208 3 C -0.012 4.012 4 C -0.055 4.055 5 C -0.110 4.110 6 C 0.070 3.930 7 C 0.567 3.433 8 O -0.580 6.580 9 N -0.592 5.592 10 C 0.115 3.885 11 C -0.144 4.144 12 C 0.168 3.832 13 H 0.085 0.915 14 N -0.605 5.605 15 C 0.185 3.815 16 C -0.266 4.266 17 H 0.080 0.920 18 C -0.053 4.053 19 N -0.940 5.940 20 Si 0.973 3.027 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.265 1.265 24 C 0.096 3.904 25 N -0.457 5.457 26 C 0.119 3.881 27 H 0.264 0.736 28 H 0.173 0.827 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.064 0.936 34 H -0.008 1.008 35 H 0.021 0.979 36 H 0.029 0.971 37 H 0.248 0.752 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.252 -0.607 6.471 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.209 4.209 3 C -0.015 4.015 4 C -0.080 4.080 5 C -0.131 4.131 6 C -0.066 4.066 7 C 0.356 3.644 8 O -0.461 6.461 9 N -0.323 5.323 10 C -0.006 4.006 11 C -0.184 4.184 12 C 0.059 3.941 13 H 0.103 0.897 14 N -0.327 5.327 15 C 0.040 3.960 16 C -0.395 4.395 17 H 0.098 0.902 18 C -0.248 4.248 19 N -0.587 5.587 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.189 1.189 24 C -0.029 4.029 25 N -0.168 5.168 26 C -0.042 4.042 27 H 0.280 0.720 28 H 0.191 0.809 29 H 0.170 0.830 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.010 0.990 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -26.244 -0.502 6.275 26.988 hybrid contribution 1.101 -0.652 0.464 1.362 sum -25.142 -1.155 6.739 26.055 Atomic orbital electron populations 1.25886 0.96427 0.95434 0.95099 1.19766 0.91753 1.04683 1.04671 1.17332 0.89049 0.96491 0.98579 1.21939 0.92322 0.97790 0.95933 1.22098 0.95514 0.98015 0.97475 1.20884 0.92431 0.94562 0.98718 1.18077 0.87080 0.80511 0.78766 1.90756 1.67205 1.40517 1.47642 1.48450 1.07632 1.26357 1.49849 1.22743 0.96221 0.88354 0.93307 1.23309 0.94259 1.02841 0.97945 1.21553 0.87913 0.94201 0.90447 0.89655 1.44082 1.17708 1.33059 1.37844 1.20506 0.94044 0.89246 0.92212 1.19620 0.86860 0.94090 1.38968 0.90200 1.26003 1.00553 0.97630 1.00564 1.70296 1.23213 1.19548 1.45610 0.85195 0.79095 0.78693 0.76916 1.21337 1.22275 1.18927 1.22599 0.79835 1.00547 0.99958 1.67789 1.08966 1.23625 1.16393 1.23510 0.88414 0.97066 0.95214 0.72015 0.80913 0.83029 0.86866 0.89893 0.88240 0.91772 0.99001 0.96048 0.95199 0.94297 0.94176 0.93057 0.78840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 19.25 74.32 1.43 0.60 16 2 C -0.21 -2.70 13.28 30.01 0.40 -2.30 16 3 C -0.01 -0.20 5.75 -21.20 -0.12 -0.32 16 4 C -0.05 -0.88 9.89 22.69 0.22 -0.65 16 5 C -0.11 -2.45 9.61 22.57 0.22 -2.23 16 6 C 0.07 1.93 6.72 41.88 0.28 2.21 16 7 C 0.57 20.39 7.83 86.83 0.68 21.07 16 8 O -0.58 -24.77 16.63 -3.85 -0.06 -24.83 16 9 N -0.59 -21.02 3.33 -815.02 -2.71 -23.73 16 10 C 0.12 3.25 5.93 86.86 0.51 3.76 16 11 C -0.14 -4.60 6.59 31.98 0.21 -4.39 16 12 C 0.17 6.79 3.44 46.18 0.16 6.95 16 13 H 0.09 3.32 7.94 -2.39 -0.02 3.31 16 14 N -0.61 -30.59 2.94 -696.13 -2.05 -32.64 16 15 C 0.18 9.56 7.70 127.77 0.98 10.54 16 16 C -0.27 -14.49 9.61 84.03 0.81 -13.69 16 17 H 0.08 4.12 7.82 -2.91 -0.02 4.10 16 18 C -0.05 -2.98 5.38 84.86 0.46 -2.52 16 19 N -0.94 -56.63 10.11 21.65 0.22 -56.41 16 20 Si 0.97 45.27 29.56 68.60 2.03 47.30 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 24 C 0.10 3.99 6.51 86.73 0.56 4.56 16 25 N -0.46 -10.61 6.56 -183.94 -1.21 -11.82 16 26 C 0.12 2.03 10.91 85.18 0.93 2.96 16 27 H 0.26 -0.43 7.80 -4.42 -0.03 -0.47 16 28 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.15 3.35 7.63 -2.91 -0.02 3.33 16 30 H 0.11 2.91 5.88 -2.39 -0.01 2.89 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.06 2.22 6.14 -2.39 -0.01 2.21 16 34 H -0.01 -0.49 7.38 -2.39 -0.02 -0.50 16 35 H 0.02 0.97 6.13 -2.39 -0.01 0.96 16 36 H 0.03 1.66 7.02 -2.39 -0.02 1.64 16 37 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.04 1.94 7.07 -2.39 -0.02 1.92 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -73.30 338.53 5.01 -68.30 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.05 Total: 7.26 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: 7.74 Total: 26.56 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.75 Total: -124.59 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.83 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.30 5.01 -68.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972750941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.954 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds