Wall clock time and date at job start Tue Mar 31 2020 03:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39636 * 120.49072 * 353.67340 * 3 2 1 5 5 N 1.31762 * 120.88023 * 180.02562 * 4 3 2 6 6 C 1.31728 * 122.03794 * 0.02562 * 5 4 3 7 7 C 1.39601 * 120.88168 * 0.02562 * 6 5 4 8 8 C 1.47867 * 120.49042 * 179.97438 * 7 6 5 9 9 O 1.21543 * 120.00116 * 342.57472 * 8 7 6 10 10 N 1.34776 * 119.99743 * 162.57095 * 8 7 6 11 11 C 1.47424 * 125.64888 * 354.08586 * 10 8 7 12 12 C 1.54906 * 104.83262 * 204.16324 * 11 10 8 13 13 C 1.55154 * 101.58198 * 322.99091 * 12 11 10 14 14 H 1.09003 * 110.71764 * 276.96209 * 13 12 11 15 15 N 1.46498 * 110.72435 * 153.86511 * 13 12 11 16 16 C 1.36940 * 119.99943 * 86.44920 * 15 13 12 17 17 H 1.07998 * 119.99876 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99548 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00570 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99652 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47295 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47272 * 60.00319 * 20 18 16 23 23 H 1.48500 * 109.47437 * 300.00379 * 20 18 16 24 24 C 1.47016 * 125.64801 * 174.12590 * 10 8 7 25 25 H 1.09000 * 109.88204 * 59.48799 * 24 10 8 26 26 C 1.53004 * 109.88510 * 298.32344 * 24 10 8 27 27 C 1.39681 * 120.48572 * 173.97618 * 3 2 1 28 28 H 4.52730 * 13.93003 * 359.97438 * 4 2 1 29 29 H 1.07994 * 119.56205 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.55821 * 179.97438 * 6 5 4 31 31 H 1.09004 * 110.36769 * 85.32485 * 11 10 8 32 32 H 1.09007 * 110.36901 * 323.00235 * 11 10 8 33 33 H 1.08999 * 111.00808 * 204.91411 * 12 11 10 34 34 H 1.08999 * 111.00586 * 81.06151 * 12 11 10 35 35 H 0.96998 * 119.99894 * 266.46110 * 15 13 12 36 36 H 0.97001 * 119.99786 * 359.97438 * 19 18 16 37 37 H 1.09003 * 109.46849 * 302.19464 * 26 24 10 38 38 H 1.08997 * 109.46948 * 62.18667 * 26 24 10 39 39 H 1.08997 * 109.47054 * 182.19121 * 26 24 10 40 40 H 1.07996 * 120.92448 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1950 0.1326 5 7 4.6326 -1.2032 0.1341 6 6 5.3385 -0.0977 0.0126 7 6 4.7109 1.1418 -0.1237 8 6 5.5117 2.3774 -0.2590 9 8 6.6850 2.3790 0.0585 10 7 4.9407 3.5019 -0.7343 11 6 3.5711 3.6101 -1.2691 12 6 3.6094 4.8388 -2.2117 13 6 4.5615 5.7921 -1.4423 14 1 4.0180 6.3430 -0.6746 15 7 5.2286 6.7141 -2.3648 16 6 4.6202 7.8891 -2.7178 17 1 3.6488 8.1362 -2.3158 18 6 5.2522 8.7624 -3.5923 19 7 6.4359 8.4609 -4.0827 20 14 4.4226 10.3655 -4.0733 21 1 5.2974 11.1135 -5.0117 22 1 4.1856 11.1845 -2.8574 23 1 3.1251 10.0729 -4.7336 24 6 5.5807 4.8235 -0.8063 25 1 6.4761 4.7685 -1.4254 26 6 5.9458 5.3022 0.6003 27 6 3.3141 1.1980 -0.1263 28 1 -1.0500 -0.0010 0.0006 29 1 2.7763 -2.1252 0.2361 30 1 6.4171 -0.1509 0.0193 31 1 2.8598 3.7750 -0.4597 32 1 3.3098 2.7114 -1.8278 33 1 2.6184 5.2796 -2.3195 34 1 4.0247 4.5727 -3.1837 35 1 6.1012 6.4922 -2.7258 36 1 6.8668 7.6287 -3.8327 37 1 5.0478 5.3353 1.2173 38 1 6.6654 4.6136 1.0430 39 1 6.3840 6.2985 0.5427 40 1 2.7969 2.1408 -0.2262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986900749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:13 Heat of formation + Delta-G solvation = 64.925576 kcal Electronic energy + Delta-G solvation = -23484.537628 eV Core-core repulsion = 20072.886619 eV Total energy + Delta-G solvation = -3411.651009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08410 -40.69998 -38.92504 -36.38979 -35.37502 -34.32315 -32.93842 -32.25112 -31.59367 -30.55831 -26.90473 -26.10577 -25.48716 -24.70052 -23.71222 -22.19369 -21.05603 -19.63605 -19.29294 -18.32107 -18.00348 -17.68220 -17.47230 -16.67219 -16.36904 -15.95481 -15.62544 -15.46717 -15.13334 -14.91058 -14.64739 -14.43159 -14.27778 -13.84124 -13.56068 -13.46877 -12.99267 -12.76611 -12.72768 -12.66855 -12.36167 -12.18158 -11.87273 -11.80854 -11.78131 -11.49422 -11.24059 -10.98777 -10.89487 -10.59561 -10.00085 -9.79389 -9.14987 -8.37890 -5.34270 -0.62826 -0.25376 1.49030 1.59633 1.62612 1.70761 1.75266 1.86496 2.08481 2.72986 2.83003 2.98982 3.23901 3.36756 3.39648 3.47070 3.60004 3.66276 3.68834 3.83022 4.02815 4.09326 4.16236 4.22274 4.30268 4.36263 4.48870 4.54274 4.73237 4.76100 4.80945 4.90475 5.01732 5.09179 5.10523 5.16208 5.31449 5.40252 5.61922 6.28805 6.48353 6.51421 6.66758 6.86002 7.05595 7.94414 8.07879 9.13327 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.003419 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.790239 B = 8187.640316 C = 9058.815374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.207 4.207 3 C -0.041 4.041 4 C 0.145 3.855 5 N -0.495 5.495 6 C 0.156 3.844 7 C -0.185 4.185 8 C 0.575 3.425 9 O -0.569 6.569 10 N -0.602 5.602 11 C 0.096 3.904 12 C -0.147 4.147 13 C 0.176 3.824 14 H 0.074 0.926 15 N -0.741 5.741 16 C -0.326 4.326 17 H 0.076 0.924 18 C -0.104 4.104 19 N -0.978 5.978 20 Si 1.128 2.872 21 H -0.299 1.299 22 H -0.277 1.277 23 H -0.274 1.274 24 C 0.133 3.867 25 H 0.048 0.952 26 C -0.145 4.145 27 C -0.036 4.036 28 H 0.264 0.736 29 H 0.193 0.807 30 H 0.169 0.831 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.357 0.643 36 H 0.243 0.757 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.924 -18.125 10.059 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.207 4.207 3 C -0.043 4.043 4 C -0.013 4.013 5 N -0.203 5.203 6 C -0.001 4.001 7 C -0.190 4.190 8 C 0.365 3.635 9 O -0.450 6.450 10 N -0.334 5.334 11 C -0.025 4.025 12 C -0.188 4.188 13 C 0.067 3.933 14 H 0.091 0.909 15 N -0.382 5.382 16 C -0.457 4.457 17 H 0.094 0.906 18 C -0.295 4.295 19 N -0.626 5.626 20 Si 0.952 3.048 21 H -0.225 1.225 22 H -0.203 1.203 23 H -0.200 1.200 24 C 0.029 3.971 25 H 0.066 0.934 26 C -0.203 4.203 27 C -0.061 4.061 28 H 0.280 0.720 29 H 0.209 0.791 30 H 0.186 0.814 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.189 0.811 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.879 -17.524 9.537 24.304 hybrid contribution 0.335 -0.549 0.451 0.785 sum -13.544 -18.073 9.987 24.695 Atomic orbital electron populations 1.25867 0.96396 0.95386 0.95412 1.19669 0.91602 1.04941 1.04522 1.16935 0.89163 0.94199 1.04020 1.23686 0.89264 0.98377 0.89959 1.67880 1.08553 1.29883 1.13956 1.23112 1.01321 0.86060 0.89587 1.20666 0.94590 0.94551 1.09237 1.18013 0.86101 0.82363 0.77012 1.90762 1.17224 1.84813 1.52170 1.48432 1.16259 1.07786 1.60904 1.22938 0.82630 0.99525 0.97446 1.23418 1.01829 0.95390 0.98183 1.21374 0.91542 0.88919 0.91489 0.90862 1.42539 1.20825 1.20816 1.54038 1.20357 1.02868 0.97469 1.25038 0.90572 1.27191 0.97541 1.06934 0.97873 1.71001 1.16962 1.25967 1.48640 0.82632 0.74163 0.71759 0.76211 1.22538 1.20254 1.20039 1.21673 0.95890 0.82016 0.97543 0.93374 1.21944 1.02138 1.01021 0.95195 1.22787 0.92149 1.00324 0.90832 0.72038 0.79059 0.81396 0.87733 0.88625 0.88763 0.92710 0.81054 0.94708 0.90869 0.92758 0.92051 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 19.25 74.32 1.43 0.40 16 2 C -0.21 -2.99 13.27 30.01 0.40 -2.59 16 3 C -0.04 -0.72 5.73 -21.35 -0.12 -0.84 16 4 C 0.14 2.48 10.91 85.04 0.93 3.41 16 5 N -0.50 -10.79 10.33 -193.76 -2.00 -12.79 16 6 C 0.16 3.72 10.75 85.04 0.91 4.64 16 7 C -0.19 -4.49 5.78 -20.02 -0.12 -4.61 16 8 C 0.58 17.57 7.47 86.79 0.65 18.22 16 9 O -0.57 -21.34 15.78 -3.85 -0.06 -21.40 16 10 N -0.60 -17.51 3.06 -791.41 -2.43 -19.93 16 11 C 0.10 2.16 4.93 86.85 0.43 2.59 16 12 C -0.15 -4.41 6.77 31.98 0.22 -4.20 16 13 C 0.18 6.45 3.11 46.18 0.14 6.59 16 14 H 0.07 2.61 7.84 -2.39 -0.02 2.60 16 15 N -0.74 -35.69 5.25 -317.33 -1.67 -37.36 16 16 C -0.33 -17.34 9.98 84.03 0.84 -16.50 16 17 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 18 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 19 N -0.98 -60.76 13.70 21.65 0.30 -60.46 16 20 Si 1.13 50.27 29.92 68.60 2.05 52.32 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.13 4.60 3.18 45.34 0.14 4.74 16 25 H 0.05 1.96 7.69 -2.39 -0.02 1.94 16 26 C -0.14 -4.66 9.10 71.98 0.66 -4.01 16 27 C -0.04 -0.69 7.96 22.99 0.18 -0.50 16 28 H 0.26 0.02 7.80 -4.42 -0.03 -0.01 16 29 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.17 3.98 7.75 -2.91 -0.02 3.95 16 31 H 0.10 1.73 7.01 -2.38 -0.02 1.71 16 32 H 0.10 1.83 6.49 -2.38 -0.02 1.81 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.36 18.69 6.34 -92.71 -0.59 18.11 16 36 H 0.24 15.14 6.77 -92.71 -0.63 14.51 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.82 7.11 -2.39 -0.02 1.81 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.17 2.75 4.10 -2.91 -0.01 2.73 16 Total: -1.00 -72.58 340.40 3.98 -68.60 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.63 Total: 29.10 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 7.16 Total: 1.92 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -5.80 Total: -130.54 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -72.58 3.98 -68.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986900749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.525 kcal (2) G-P(sol) polarization free energy of solvation -72.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds