Wall clock time and date at job start Tue Mar 31 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39724 * 119.59156 * 340.12763 * 3 2 1 5 5 C 1.37969 * 119.19832 * 179.97438 * 4 3 2 6 6 C 1.40240 * 118.40261 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.43796 * 180.02562 * 6 5 4 8 8 O 1.21578 * 120.00365 * 336.45944 * 7 6 5 9 9 N 1.34780 * 119.99703 * 156.19691 * 7 6 5 10 10 C 1.46499 * 120.00152 * 354.66383 * 9 7 6 11 11 C 1.46499 * 119.99834 * 174.67220 * 9 7 6 12 12 C 1.53780 * 113.61310 * 217.49029 * 11 9 7 13 13 C 1.53779 * 87.08191 * 220.02007 * 12 11 9 14 14 N 1.46497 * 113.61508 * 139.98251 * 13 12 11 15 15 C 1.36938 * 120.00329 * 107.50423 * 14 13 12 16 16 H 1.08003 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00450 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00295 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99660 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47227 * 90.00342 * 19 17 15 21 21 H 1.48503 * 109.46812 * 210.00080 * 19 17 15 22 22 H 1.48497 * 109.47499 * 329.99886 * 19 17 15 23 23 C 1.53778 * 87.08136 * 25.43365 * 13 12 11 24 24 C 1.39647 * 119.11693 * 0.27643 * 6 5 4 25 25 N 1.31490 * 120.71557 * 359.43112 * 24 6 5 26 26 H 4.51258 * 14.17651 * 359.97438 * 4 2 1 27 27 H 1.08002 * 120.40019 * 359.97438 * 4 3 2 28 28 H 1.08007 * 120.79916 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.46726 * 95.72789 * 10 9 7 30 30 H 1.08992 * 109.47393 * 215.72935 * 10 9 7 31 31 H 1.09001 * 109.47349 * 335.73601 * 10 9 7 32 32 H 1.08998 * 112.85178 * 348.80032 * 11 9 7 33 33 H 1.09002 * 113.61632 * 334.57040 * 12 11 9 34 34 H 1.08997 * 113.61172 * 105.47081 * 12 11 9 35 35 H 1.08996 * 113.69332 * 270.87210 * 13 12 11 36 36 H 0.97007 * 119.99972 * 287.50392 * 14 13 12 37 37 H 0.96996 * 120.00101 * 179.97438 * 18 17 15 38 38 H 1.08997 * 113.61523 * 220.01543 * 23 13 12 39 39 H 1.09005 * 113.61664 * 89.11632 * 23 13 12 40 40 H 1.07998 * 119.64397 * 179.72095 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.2966 -1.1417 0.4130 5 6 4.6762 -1.1324 0.4093 6 6 5.3343 0.0320 -0.0126 7 6 6.8097 0.0911 -0.0350 8 8 7.4587 -0.6482 0.6794 9 7 7.4369 0.9610 -0.8513 10 6 6.6619 1.7646 -1.7999 11 6 8.8937 1.1028 -0.7902 12 6 9.3805 2.5489 -0.9823 13 6 10.5248 1.9678 -1.8296 14 7 10.8377 2.7646 -3.0185 15 6 11.9886 3.5052 -3.0630 16 1 12.6655 3.5023 -2.2214 17 6 12.2849 4.2606 -4.1892 18 7 13.3909 4.9728 -4.2317 19 14 11.1138 4.2662 -5.6445 20 1 10.1221 5.3589 -5.4777 21 1 11.8819 4.4818 -6.8971 22 1 10.4066 2.9624 -5.7159 23 6 9.6010 0.7720 -2.1150 24 6 4.5758 1.1365 -0.4062 25 7 3.2619 1.0876 -0.3943 26 1 -1.0499 -0.0008 0.0008 27 1 2.7568 -2.0213 0.7313 28 1 5.2360 -2.0012 0.7229 29 1 6.4550 2.7420 -1.3638 30 1 7.2321 1.8907 -2.7201 31 1 5.7218 1.2593 -2.0211 32 1 9.3316 0.6046 0.0747 33 1 8.6886 3.1706 -1.5505 34 1 9.7170 3.0224 -0.0601 35 1 11.4102 1.7070 -1.2499 36 1 10.2295 2.7675 -3.7742 37 1 13.5981 5.5003 -5.0189 38 1 10.1155 -0.1888 -2.1073 39 1 8.9694 0.9080 -2.9930 40 1 5.0738 2.0390 -0.7283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999714545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:27 Heat of formation + Delta-G solvation = 122.330113 kcal Electronic energy + Delta-G solvation = -22906.691162 eV Core-core repulsion = 19497.529401 eV Total energy + Delta-G solvation = -3409.161761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23058 -39.76875 -38.11013 -35.34895 -34.29438 -33.21437 -32.94944 -31.19796 -30.40170 -27.56676 -25.98004 -25.29875 -24.20302 -23.95806 -22.18328 -20.11901 -19.86625 -19.15337 -17.89016 -17.42100 -17.12931 -16.46603 -16.30907 -15.62263 -15.01276 -14.73938 -14.68997 -14.38206 -14.05668 -13.69076 -13.52384 -13.19031 -13.01558 -12.76119 -12.32222 -12.08603 -11.94026 -11.79847 -11.60110 -11.33210 -11.05465 -10.78028 -10.57451 -10.39620 -10.37085 -10.21051 -10.07645 -9.77801 -9.61858 -9.24459 -8.96903 -8.66455 -7.34107 -5.82992 -3.19456 -0.05403 0.76359 2.13570 2.16156 2.73895 2.87576 3.31989 3.33852 3.40777 3.42615 3.56952 4.12495 4.17901 4.40057 4.52722 4.57141 4.66407 4.83105 4.90221 4.96432 5.08405 5.14876 5.23485 5.29982 5.36403 5.46168 5.56501 5.58863 5.62681 5.69907 5.97430 6.04298 6.08384 6.14253 6.22139 6.41828 6.57797 6.83501 6.95501 7.25034 7.34405 7.92260 7.94084 8.36330 9.13296 9.85595 10.04745 11.35052 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.002889 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.145534 B = 9690.825893 C =10475.791531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C 0.243 3.757 4 C -0.154 4.154 5 C -0.016 4.016 6 C -0.178 4.178 7 C 0.560 3.440 8 O -0.534 6.534 9 N -0.591 5.591 10 C 0.057 3.943 11 C 0.118 3.882 12 C -0.174 4.174 13 C 0.176 3.824 14 N -0.734 5.734 15 C -0.250 4.250 16 H 0.092 0.908 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.166 4.166 24 C 0.123 3.877 25 N -0.473 5.473 26 H 0.231 0.769 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 -11.802 8.344 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.108 3.892 4 C -0.174 4.174 5 C -0.042 4.042 6 C -0.184 4.184 7 C 0.348 3.652 8 O -0.412 6.412 9 N -0.321 5.321 10 C -0.086 4.086 11 C 0.015 3.985 12 C -0.216 4.216 13 C 0.064 3.936 14 N -0.373 5.373 15 C -0.379 4.379 16 H 0.110 0.890 17 C -0.191 4.191 18 N -0.578 5.578 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.206 4.206 24 C -0.036 4.036 25 N -0.181 5.181 26 H 0.248 0.752 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -24.046 -11.319 8.461 27.891 hybrid contribution -0.559 -0.514 -0.944 1.211 sum -24.605 -11.833 7.517 28.318 Atomic orbital electron populations 1.24986 0.95653 0.97852 0.96564 1.19291 0.91045 1.02152 1.02819 1.16790 0.88224 0.89858 0.94287 1.22013 0.94371 0.99203 1.01796 1.21661 0.93593 0.97452 0.91481 1.21159 0.95062 0.96960 1.05169 1.18022 0.86448 0.80380 0.80357 1.90787 1.66910 1.41105 1.42367 1.47745 1.08020 1.39659 1.36701 1.22410 0.96786 0.95340 0.94055 1.22681 0.77033 0.99084 0.99713 1.24307 1.00900 0.94562 1.01839 1.21313 0.93850 0.89403 0.89035 1.42702 1.25000 1.54450 1.15148 1.19135 0.97243 1.19337 1.02225 0.89014 1.24704 0.97176 0.99291 0.97893 1.69698 1.24906 1.33388 1.29834 0.86557 0.80890 0.77592 0.83503 1.21017 1.21678 1.20346 1.23960 0.99155 1.00664 0.96849 1.23993 0.88673 0.98613 0.92273 1.67873 1.09698 1.26097 1.14411 0.75231 0.83584 0.82988 0.91260 0.89917 0.90078 0.86355 0.89875 0.91438 0.89314 0.80498 0.92970 0.91238 0.90241 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 19.25 29.55 0.57 -0.27 16 2 C -0.15 -1.41 13.43 -38.83 -0.52 -1.93 16 3 C 0.24 2.50 6.59 -84.91 -0.56 1.94 16 4 C -0.15 -1.30 9.77 -39.13 -0.38 -1.68 16 5 C -0.02 -0.15 9.70 -38.93 -0.38 -0.53 16 6 C -0.18 -1.95 5.52 -104.77 -0.58 -2.52 16 7 C 0.56 7.37 7.50 -12.40 -0.09 7.28 16 8 O -0.53 -8.63 16.15 5.30 0.09 -8.55 16 9 N -0.59 -7.25 3.08 -174.18 -0.54 -7.79 16 10 C 0.06 0.54 7.22 59.85 0.43 0.98 16 11 C 0.12 1.63 4.19 -67.12 -0.28 1.35 16 12 C -0.17 -2.65 7.35 -25.92 -0.19 -2.84 16 13 C 0.18 3.15 4.48 -67.12 -0.30 2.85 16 14 N -0.73 -16.44 5.20 -52.64 -0.27 -16.71 16 15 C -0.25 -6.81 10.45 -15.06 -0.16 -6.96 16 16 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 19 Si 0.88 21.41 27.73 -169.99 -4.71 16.69 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.26 6.52 56.52 0.37 -5.90 16 23 C -0.17 -2.48 7.40 -25.92 -0.19 -2.67 16 24 C 0.12 1.25 8.71 -17.17 -0.15 1.10 16 25 N -0.47 -5.35 10.27 -10.79 -0.11 -5.46 16 26 H 0.23 0.46 7.80 -54.09 -0.42 0.04 16 27 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.15 1.28 7.90 -52.48 -0.41 0.87 16 29 H 0.07 0.57 7.05 -51.93 -0.37 0.20 16 30 H 0.08 0.83 6.59 -51.93 -0.34 0.49 16 31 H 0.08 0.67 5.11 -51.93 -0.27 0.41 16 32 H 0.12 1.72 7.28 -51.93 -0.38 1.35 16 33 H 0.08 1.24 6.79 -51.93 -0.35 0.89 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 36 H 0.36 7.91 5.79 -40.82 -0.24 7.68 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.16 6.83 -51.93 -0.35 0.80 16 40 H 0.19 1.56 4.39 -52.49 -0.23 1.32 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -33.95 338.56 -7.19 -41.15 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.64 Total: 7.34 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.88 Total: -3.84 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.15 Total: -57.89 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.95 -7.19 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999714545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.477 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds