Wall clock time and date at job start Tue Mar 31 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39724 * 119.59156 * 340.12763 * 3 2 1 5 5 C 1.37969 * 119.19832 * 179.97438 * 4 3 2 6 6 C 1.40240 * 118.40261 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.43796 * 180.02562 * 6 5 4 8 8 O 1.21578 * 120.00365 * 336.45944 * 7 6 5 9 9 N 1.34780 * 119.99703 * 156.19691 * 7 6 5 10 10 C 1.46499 * 120.00152 * 354.66383 * 9 7 6 11 11 C 1.46499 * 119.99834 * 174.67220 * 9 7 6 12 12 C 1.53780 * 113.61310 * 217.49029 * 11 9 7 13 13 C 1.53779 * 87.08191 * 220.02007 * 12 11 9 14 14 N 1.46497 * 113.61508 * 139.98251 * 13 12 11 15 15 C 1.36938 * 120.00329 * 107.50423 * 14 13 12 16 16 H 1.08003 * 119.99888 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00450 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00295 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99660 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47227 * 90.00342 * 19 17 15 21 21 H 1.48503 * 109.46812 * 210.00080 * 19 17 15 22 22 H 1.48497 * 109.47499 * 329.99886 * 19 17 15 23 23 C 1.53778 * 87.08136 * 25.43365 * 13 12 11 24 24 C 1.39647 * 119.11693 * 0.27643 * 6 5 4 25 25 N 1.31490 * 120.71557 * 359.43112 * 24 6 5 26 26 H 4.51258 * 14.17651 * 359.97438 * 4 2 1 27 27 H 1.08002 * 120.40019 * 359.97438 * 4 3 2 28 28 H 1.08007 * 120.79916 * 180.02562 * 5 4 3 29 29 H 1.08999 * 109.46726 * 95.72789 * 10 9 7 30 30 H 1.08992 * 109.47393 * 215.72935 * 10 9 7 31 31 H 1.09001 * 109.47349 * 335.73601 * 10 9 7 32 32 H 1.08998 * 112.85178 * 348.80032 * 11 9 7 33 33 H 1.09002 * 113.61632 * 334.57040 * 12 11 9 34 34 H 1.08997 * 113.61172 * 105.47081 * 12 11 9 35 35 H 1.08996 * 113.69332 * 270.87210 * 13 12 11 36 36 H 0.97007 * 119.99972 * 287.50392 * 14 13 12 37 37 H 0.96996 * 120.00101 * 179.97438 * 18 17 15 38 38 H 1.08997 * 113.61523 * 220.01543 * 23 13 12 39 39 H 1.09005 * 113.61664 * 89.11632 * 23 13 12 40 40 H 1.07998 * 119.64397 * 179.72095 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.2966 -1.1417 0.4130 5 6 4.6762 -1.1324 0.4093 6 6 5.3343 0.0320 -0.0126 7 6 6.8097 0.0911 -0.0350 8 8 7.4587 -0.6482 0.6794 9 7 7.4369 0.9610 -0.8513 10 6 6.6619 1.7646 -1.7999 11 6 8.8937 1.1028 -0.7902 12 6 9.3805 2.5489 -0.9823 13 6 10.5248 1.9678 -1.8296 14 7 10.8377 2.7646 -3.0185 15 6 11.9886 3.5052 -3.0630 16 1 12.6655 3.5023 -2.2214 17 6 12.2849 4.2606 -4.1892 18 7 13.3909 4.9728 -4.2317 19 14 11.1138 4.2662 -5.6445 20 1 10.1221 5.3589 -5.4777 21 1 11.8819 4.4818 -6.8971 22 1 10.4066 2.9624 -5.7159 23 6 9.6010 0.7720 -2.1150 24 6 4.5758 1.1365 -0.4062 25 7 3.2619 1.0876 -0.3943 26 1 -1.0499 -0.0008 0.0008 27 1 2.7568 -2.0213 0.7313 28 1 5.2360 -2.0012 0.7229 29 1 6.4550 2.7420 -1.3638 30 1 7.2321 1.8907 -2.7201 31 1 5.7218 1.2593 -2.0211 32 1 9.3316 0.6046 0.0747 33 1 8.6886 3.1706 -1.5505 34 1 9.7170 3.0224 -0.0601 35 1 11.4102 1.7070 -1.2499 36 1 10.2295 2.7675 -3.7742 37 1 13.5981 5.5003 -5.0189 38 1 10.1155 -0.1888 -2.1073 39 1 8.9694 0.9080 -2.9930 40 1 5.0738 2.0390 -0.7283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999714545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:27 Heat of formation + Delta-G solvation = 99.505920 kcal Electronic energy + Delta-G solvation = -22907.680894 eV Core-core repulsion = 19497.529401 eV Total energy + Delta-G solvation = -3410.151492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.09569 -40.75650 -39.31153 -36.51936 -35.32485 -34.60948 -33.68146 -32.69426 -31.59696 -28.44061 -27.05635 -26.54317 -25.69698 -24.67876 -23.62148 -21.35577 -20.57520 -20.34730 -19.36647 -18.73706 -18.00965 -17.43305 -16.97530 -16.65067 -16.36241 -16.17512 -15.53589 -15.47304 -15.22598 -14.72380 -14.69391 -14.41651 -14.19532 -13.83602 -13.65393 -13.55746 -13.24538 -12.88885 -12.78344 -12.33138 -12.24044 -12.08820 -11.90429 -11.81174 -11.76229 -11.58240 -11.17906 -11.10208 -10.90922 -10.61973 -9.95701 -9.69193 -9.28095 -8.00769 -5.34709 -0.78614 0.06668 1.35975 1.39370 1.43771 1.50909 1.61254 1.79315 2.05638 2.50269 2.83880 2.89654 3.28897 3.30099 3.51141 3.60678 3.68374 3.74688 3.79229 3.90697 4.01687 4.07911 4.12662 4.22028 4.46960 4.50502 4.64166 4.72220 4.73513 4.83557 4.87961 4.91625 5.00957 5.04359 5.14842 5.33614 5.39923 5.56874 5.79043 6.22675 6.26495 6.43700 6.63057 6.94092 7.08985 7.84563 8.04549 9.20646 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.002889 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.145534 B = 9690.825893 C =10475.791531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.217 4.217 3 C 0.235 3.765 4 C -0.148 4.148 5 C -0.016 4.016 6 C -0.193 4.193 7 C 0.561 3.439 8 O -0.571 6.571 9 N -0.589 5.589 10 C 0.049 3.951 11 C 0.132 3.868 12 C -0.161 4.161 13 C 0.155 3.845 14 N -0.736 5.736 15 C -0.233 4.233 16 H 0.056 0.944 17 C -0.068 4.068 18 N -0.985 5.985 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.248 1.248 23 C -0.151 4.151 24 C 0.127 3.873 25 N -0.497 5.497 26 H 0.272 0.728 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.368 0.632 37 H 0.257 0.743 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.235 -12.841 7.893 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.218 4.218 3 C 0.101 3.899 4 C -0.167 4.167 5 C -0.042 4.042 6 C -0.199 4.199 7 C 0.351 3.649 8 O -0.452 6.452 9 N -0.319 5.319 10 C -0.092 4.092 11 C 0.028 3.972 12 C -0.202 4.202 13 C 0.046 3.954 14 N -0.377 5.377 15 C -0.364 4.364 16 H 0.074 0.926 17 C -0.259 4.259 18 N -0.635 5.635 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.228 1.228 22 H -0.173 1.173 23 C -0.191 4.191 24 C -0.031 4.031 25 N -0.205 5.205 26 H 0.287 0.713 27 H 0.191 0.809 28 H 0.177 0.823 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.202 0.798 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -28.113 -12.395 8.039 31.758 hybrid contribution 0.577 -0.242 -0.673 0.919 sum -27.536 -12.636 7.366 31.179 Atomic orbital electron populations 1.25996 0.96344 0.94854 0.93241 1.19640 0.91592 1.04970 1.05617 1.17169 0.89231 0.89964 0.93519 1.22248 0.93876 0.99683 1.00929 1.21838 0.94173 0.97301 0.90931 1.21009 0.93599 0.98096 1.07148 1.18319 0.87284 0.79700 0.79631 1.90765 1.67850 1.42679 1.43906 1.47732 1.07327 1.39799 1.36995 1.22651 0.97046 0.95978 0.93515 1.22331 0.78347 0.97668 0.98863 1.24110 0.99516 0.95498 1.01097 1.21584 0.94752 0.90930 0.88180 1.42631 1.23628 1.54637 1.16854 1.19089 0.97848 1.18750 1.00746 0.92564 1.25564 0.99272 0.99616 1.01419 1.69894 1.27604 1.35257 1.30790 0.85378 0.78541 0.79031 0.78621 1.20140 1.22751 1.17262 1.23817 0.98269 0.99196 0.97820 1.24155 0.88467 0.98763 0.91758 1.67906 1.10034 1.27030 1.15578 0.71255 0.80933 0.82312 0.89494 0.89803 0.88625 0.87146 0.88918 0.91576 0.90608 0.79804 0.93415 0.90868 0.89100 0.78440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 19.25 74.32 1.43 0.63 16 2 C -0.22 -3.56 13.43 30.02 0.40 -3.16 16 3 C 0.24 4.51 6.59 40.58 0.27 4.78 16 4 C -0.15 -2.25 9.77 22.57 0.22 -2.03 16 5 C -0.02 -0.29 9.70 22.69 0.22 -0.07 16 6 C -0.19 -3.99 5.52 -19.96 -0.11 -4.10 16 7 C 0.56 14.20 7.50 86.74 0.65 14.85 16 8 O -0.57 -18.30 16.15 -3.96 -0.06 -18.37 16 9 N -0.59 -13.45 3.08 -823.25 -2.54 -15.98 16 10 C 0.05 0.82 7.22 127.77 0.92 1.74 16 11 C 0.13 3.48 4.19 45.52 0.19 3.67 16 12 C -0.16 -4.68 7.35 31.12 0.23 -4.45 16 13 C 0.16 5.47 4.48 45.52 0.20 5.68 16 14 N -0.74 -32.37 5.20 -320.46 -1.67 -34.03 16 15 C -0.23 -12.94 10.45 84.03 0.88 -12.06 16 16 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 18 N -0.99 -62.61 13.97 21.65 0.30 -62.31 16 19 Si 0.96 43.99 27.73 68.60 1.90 45.89 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 23 C -0.15 -4.25 7.40 31.12 0.23 -4.02 16 24 C 0.13 2.40 8.71 85.08 0.74 3.14 16 25 N -0.50 -10.59 10.27 -188.04 -1.93 -12.52 16 26 H 0.27 -0.26 7.80 -4.42 -0.03 -0.29 16 27 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.16 2.52 7.90 -2.91 -0.02 2.49 16 29 H 0.09 1.16 7.05 -2.39 -0.02 1.15 16 30 H 0.08 1.41 6.59 -2.39 -0.02 1.40 16 31 H 0.10 1.35 5.11 -2.39 -0.01 1.34 16 32 H 0.11 3.16 7.28 -2.39 -0.02 3.15 16 33 H 0.09 2.55 6.79 -2.39 -0.02 2.53 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 36 H 0.37 15.22 5.79 -92.70 -0.54 14.69 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.81 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.09 2.39 6.83 -2.38 -0.02 2.37 16 40 H 0.20 2.93 4.39 -2.91 -0.01 2.92 16 Total: -1.00 -75.81 338.56 3.44 -72.37 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.49 Total: 23.80 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 6.95 Total: 1.16 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.83 Total: -124.85 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.06 Total: -18.37 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.89 kcal Total: -75.81 3.44 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999714545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.876 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds