Wall clock time and date at job start Tue Mar 31 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39639 * 120.49133 * 6.88899 * 3 2 1 5 5 N 1.31761 * 120.88081 * 180.02562 * 4 3 2 6 6 C 1.31726 * 122.03785 * 0.02562 * 5 4 3 7 7 C 1.39593 * 120.88270 * 359.97438 * 6 5 4 8 8 C 1.47862 * 120.49188 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99974 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00004 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00076 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47162 * 185.66222 * 11 10 8 13 13 H 1.09004 * 109.99515 * 304.84485 * 12 11 10 14 14 C 1.54316 * 109.88387 * 65.94059 * 12 11 10 15 15 C 1.55450 * 102.97169 * 141.60852 * 14 12 11 16 16 C 1.54904 * 101.44700 * 324.51826 * 15 14 12 17 17 N 1.47022 * 109.88250 * 183.75215 * 12 11 10 18 18 C 1.36937 * 125.64936 * 61.61637 * 17 12 11 19 19 H 1.07998 * 119.99883 * 14.69459 * 18 17 12 20 20 C 1.38813 * 119.99801 * 194.69117 * 18 17 12 21 21 N 1.31623 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47448 * 89.99592 * 22 20 18 24 24 H 1.48496 * 109.47246 * 209.99765 * 22 20 18 25 25 H 1.48507 * 109.46794 * 329.99670 * 22 20 18 26 26 C 1.39677 * 120.49003 * 187.17144 * 3 2 1 27 27 H 4.52728 * 13.92983 * 0.02562 * 4 2 1 28 28 H 1.07996 * 119.55616 * 0.04882 * 4 3 2 29 29 H 1.08008 * 119.55750 * 180.02562 * 6 5 4 30 30 H 0.97000 * 119.99871 * 0.02562 * 10 8 7 31 31 H 1.09008 * 109.46806 * 65.66284 * 11 10 8 32 32 H 1.08996 * 109.47151 * 305.66500 * 11 10 8 33 33 H 1.09002 * 110.72411 * 259.97701 * 14 12 11 34 34 H 1.09003 * 110.72109 * 23.24730 * 14 12 11 35 35 H 1.08994 * 111.11843 * 206.46438 * 15 14 12 36 36 H 1.09003 * 111.00720 * 82.52325 * 15 14 12 37 37 H 1.08994 * 110.36939 * 278.10723 * 16 15 14 38 38 H 1.09004 * 110.36522 * 155.89648 * 16 15 14 39 39 H 0.96994 * 119.99803 * 180.02562 * 21 20 18 40 40 H 1.08003 * 120.91918 * 359.97273 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1936 -0.1443 5 7 4.6326 -1.2020 -0.1449 6 6 5.3385 -0.0980 -0.0105 7 6 4.7109 1.1399 0.1391 8 6 5.5117 2.3737 0.2899 9 8 4.9560 3.4469 0.4201 10 7 6.8579 2.3083 0.2840 11 6 7.6514 3.5308 0.4328 12 6 9.1345 3.2014 0.2518 13 1 9.4286 2.4137 0.9455 14 6 9.3982 2.7482 -1.1995 15 6 10.7761 3.3918 -1.5211 16 6 10.6772 4.7316 -0.7499 17 7 9.9462 4.4043 0.4879 18 6 10.0120 5.1049 1.6626 19 1 9.6353 4.6663 2.5747 20 6 10.5629 6.3789 1.6809 21 7 11.0225 6.9133 0.5693 22 14 10.6533 7.3344 3.2835 23 1 11.9393 7.0382 3.9647 24 1 10.5681 8.7892 2.9980 25 1 9.5244 6.9354 4.1620 26 6 3.3141 1.1952 0.1503 27 1 -1.0500 -0.0010 -0.0006 28 1 2.7762 -2.1227 -0.2574 29 1 6.4172 -0.1512 -0.0170 30 1 7.3014 1.4519 0.1805 31 1 7.4907 3.9495 1.4264 32 1 7.3457 4.2564 -0.3210 33 1 9.4569 1.6614 -1.2595 34 1 8.6281 3.1313 -1.8691 35 1 10.8887 3.5644 -2.5914 36 1 11.5924 2.7796 -1.1377 37 1 10.1233 5.4659 -1.3347 38 1 11.6726 5.1081 -0.5143 39 1 11.4078 7.8034 0.5823 40 1 2.7969 2.1359 0.2682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028126161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:43 Heat of formation + Delta-G solvation = 78.479192 kcal Electronic energy + Delta-G solvation = -22927.937725 eV Core-core repulsion = 19516.874445 eV Total energy + Delta-G solvation = -3411.063280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83660 -39.11881 -37.61437 -34.85090 -34.30597 -32.68280 -32.45187 -31.01788 -29.64558 -28.66398 -25.45674 -24.73959 -24.36672 -23.29855 -21.16627 -20.25880 -19.80969 -19.07194 -17.70138 -17.18828 -16.83935 -16.49555 -15.61347 -15.26837 -15.21327 -14.77110 -14.37024 -14.20363 -13.85724 -13.55091 -13.30023 -13.07337 -12.88230 -12.12525 -12.01964 -11.92020 -11.78461 -11.36448 -11.18884 -10.97629 -10.80537 -10.40660 -10.28949 -10.11952 -10.06393 -9.95877 -9.86355 -9.75383 -9.60768 -9.19869 -8.77195 -8.60737 -6.87589 -5.79691 -3.16730 0.18113 0.62550 2.28796 2.45055 3.04596 3.20180 3.38498 3.44433 3.45954 3.68812 3.73913 3.99762 4.40528 4.45493 4.50733 4.65128 4.86943 5.07276 5.29488 5.36197 5.45207 5.46783 5.58648 5.66699 5.70773 5.77678 6.00425 6.08388 6.13264 6.20647 6.41899 6.49250 6.53541 6.64263 6.74827 7.00088 7.07671 7.43634 7.48578 7.57571 7.61936 7.76567 8.21845 8.28270 9.14299 9.74817 10.41815 11.32194 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.003076 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.281468 B = 9100.361860 C = 9918.731428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.152 4.152 3 C -0.048 4.048 4 C 0.142 3.858 5 N -0.482 5.482 6 C 0.140 3.860 7 C -0.175 4.175 8 C 0.555 3.445 9 O -0.533 6.533 10 N -0.713 5.713 11 C 0.108 3.892 12 C 0.151 3.849 13 H 0.039 0.961 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.001 4.001 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.003 3.997 27 H 0.228 0.772 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.395 0.605 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 -16.321 -3.816 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C -0.050 4.050 4 C -0.015 4.015 5 N -0.189 5.189 6 C -0.017 4.017 7 C -0.180 4.180 8 C 0.340 3.660 9 O -0.410 6.410 10 N -0.364 5.364 11 C -0.017 4.017 12 C 0.043 3.957 13 H 0.056 0.944 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.312 5.312 18 C -0.364 4.364 19 H 0.094 0.906 20 C -0.198 4.198 21 N -0.561 5.561 22 Si 0.741 3.259 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.023 4.023 27 H 0.244 0.756 28 H 0.182 0.818 29 H 0.182 0.818 30 H 0.230 0.770 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.600 -16.064 -3.739 21.377 hybrid contribution -0.443 1.028 0.864 1.414 sum -14.043 -15.036 -2.875 20.774 Atomic orbital electron populations 1.24932 0.95722 0.98232 0.98632 1.19585 0.91468 1.02274 1.01941 1.16856 0.88196 0.94678 1.05273 1.23130 0.89693 0.97008 0.91706 1.67727 1.07579 1.30392 1.13176 1.23144 1.00645 0.86719 0.91239 1.21090 0.94764 0.95610 1.06567 1.17957 0.82584 0.87824 0.77665 1.90809 1.71248 1.29580 1.49408 1.46074 1.05410 1.12021 1.72914 1.22352 0.91822 0.84873 1.02630 1.21144 0.88563 0.91669 0.94373 0.94370 1.22672 0.98336 0.98955 0.96566 1.23053 0.95942 1.00139 0.99585 1.21462 0.97904 0.90514 0.85459 1.44484 1.47324 1.29087 1.10311 1.18981 1.36371 0.95639 0.85385 0.90612 1.24925 1.01099 0.96544 0.97232 1.69936 1.44709 1.16259 1.25159 0.86145 0.77849 0.79379 0.82548 1.21499 1.21576 1.20495 1.21842 0.92529 0.98403 0.89534 0.75582 0.81786 0.81802 0.77035 0.91129 0.91246 0.92323 0.91790 0.92283 0.92251 0.95571 0.90926 0.93557 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 19.25 29.55 0.57 -0.57 16 2 C -0.15 -1.44 13.27 -38.84 -0.52 -1.95 16 3 C -0.05 -0.49 5.73 -106.91 -0.61 -1.10 16 4 C 0.14 1.33 10.91 -17.06 -0.19 1.14 16 5 N -0.48 -5.05 10.33 -12.59 -0.13 -5.18 16 6 C 0.14 1.43 10.70 -17.09 -0.18 1.25 16 7 C -0.18 -2.12 5.88 -104.87 -0.62 -2.74 16 8 C 0.56 8.49 7.78 -12.32 -0.10 8.39 16 9 O -0.53 -10.36 16.40 5.32 0.09 -10.28 16 10 N -0.71 -10.17 5.30 -61.24 -0.32 -10.50 16 11 C 0.11 2.00 5.09 -4.04 -0.02 1.98 16 12 C 0.15 2.86 3.20 -66.96 -0.21 2.65 16 13 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.13 -2.03 6.18 -24.74 -0.15 -2.18 16 15 C -0.15 -2.64 7.11 -24.43 -0.17 -2.82 16 16 C 0.17 4.00 5.40 -2.53 -0.01 3.99 16 17 N -0.59 -14.25 3.13 -162.58 -0.51 -14.76 16 18 C -0.24 -6.34 9.73 -15.06 -0.15 -6.49 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 21 N -0.91 -26.37 10.57 55.49 0.59 -25.78 16 22 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.00 0.04 9.44 -38.46 -0.36 -0.33 16 27 H 0.23 0.71 7.80 -54.09 -0.42 0.29 16 28 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.16 1.25 6.41 -52.48 -0.34 0.92 16 30 H 0.40 4.29 6.44 -40.82 -0.26 4.03 16 31 H 0.07 1.49 7.88 -51.92 -0.41 1.08 16 32 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 38 H 0.07 1.90 6.93 -51.93 -0.36 1.54 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 40 H 0.15 1.81 7.73 -52.48 -0.41 1.40 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -32.70 345.61 -8.02 -40.72 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.10 Total: 2.56 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.82 Total: 1.12 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.38 Total: -56.21 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.70 -8.02 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028126161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.201 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds