Wall clock time and date at job start Tue Mar 31 2020 03:55:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17398 * 1
3 3 C 1.43198 * 179.97438 * 2 1
4 4 C 1.39727 * 119.59049 * 124.85189 * 3 2 1
5 5 C 1.37968 * 119.20613 * 179.97438 * 4 3 2
6 6 C 1.40240 * 118.39960 * 0.02562 * 5 4 3
7 7 C 1.47671 * 120.44414 * 180.02562 * 6 5 4
8 8 O 1.21578 * 119.99944 * 359.97438 * 7 6 5
9 9 N 1.34771 * 120.00241 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00266 * 179.97438 * 9 7 6
11 11 C 1.52998 * 109.47479 * 184.66200 * 10 9 7
12 12 H 1.09003 * 109.99808 * 54.40555 * 11 10 9
13 13 C 1.54322 * 109.88159 * 293.31179 * 11 10 9
14 14 C 1.55280 * 103.00693 * 218.46756 * 13 11 10
15 15 C 1.54911 * 101.52761 * 35.36011 * 14 13 11
16 16 N 1.47028 * 109.88439 * 175.50080 * 11 10 9
17 17 C 1.36930 * 125.64756 * 298.33590 * 16 11 10
18 18 H 1.08004 * 120.00163 * 346.29444 * 17 16 11
19 19 C 1.38813 * 119.99939 * 166.28879 * 17 16 11
20 20 N 1.31625 * 119.99899 * 0.02562 * 19 17 16
21 21 Si 1.86797 * 120.00141 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.46848 * 60.00610 * 21 19 17
23 23 H 1.48503 * 109.47194 * 180.02562 * 21 19 17
24 24 H 1.48504 * 109.47404 * 300.00552 * 21 19 17
25 25 C 1.39663 * 119.11659 * 0.27216 * 6 5 4
26 26 N 1.31482 * 120.71191 * 359.43126 * 25 6 5
27 27 H 4.51264 * 14.17419 * 0.02562 * 4 2 1
28 28 H 1.08001 * 120.39744 * 359.97438 * 4 3 2
29 29 H 1.08000 * 120.80414 * 179.97438 * 5 4 3
30 30 H 0.97002 * 119.99926 * 0.02562 * 9 7 6
31 31 H 1.09002 * 109.46997 * 64.65685 * 10 9 7
32 32 H 1.09000 * 109.47147 * 304.66068 * 10 9 7
33 33 H 1.08999 * 110.72020 * 336.74994 * 13 11 10
34 34 H 1.08994 * 110.72618 * 100.02428 * 13 11 10
35 35 H 1.09002 * 110.95884 * 277.33534 * 14 13 11
36 36 H 1.09007 * 111.10123 * 153.44765 * 14 13 11
37 37 H 1.08995 * 110.36280 * 204.23556 * 15 14 13
38 38 H 1.09003 * 110.36701 * 82.02321 * 15 14 13
39 39 H 0.96998 * 119.99971 * 179.97438 * 20 19 17
40 40 H 1.08000 * 119.64287 * 179.70753 * 25 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6060 0.0006 0.0000
4 6 3.2956 0.6953 -0.9971
5 6 4.6753 0.6911 -0.9892
6 6 5.3343 -0.0162 0.0268
7 6 6.8097 -0.0503 0.0788
8 8 7.4614 0.5368 -0.7631
9 7 7.4339 -0.7323 1.0594
10 6 8.8975 -0.7667 1.1107
11 6 9.3467 -1.6955 2.2405
12 1 8.8897 -2.6777 2.1195
13 6 8.9462 -1.0947 3.6044
14 6 10.1612 -1.4387 4.5081
15 6 11.3376 -1.3057 3.5091
16 7 10.8116 -1.8212 2.2320
17 6 11.5627 -2.3328 1.2078
18 1 11.0855 -2.8848 0.4116
19 6 12.9376 -2.1418 1.1928
20 7 13.5192 -1.4694 2.1634
21 14 13.9624 -2.8403 -0.2040
22 1 13.5055 -2.2590 -1.4918
23 1 15.3918 -2.5012 0.0132
24 1 13.8048 -4.3164 -0.2436
25 6 4.5767 -0.6921 0.9858
26 7 3.2628 -0.6601 0.9483
27 1 -1.0500 0.0000 0.0009
28 1 2.7552 1.2291 -1.7648
29 1 5.2343 1.2190 -1.7476
30 1 6.9139 -1.2011 1.7309
31 1 9.2784 0.2382 1.2933
32 1 9.2858 -1.1354 0.1613
33 1 8.8185 -0.0150 3.5275
34 1 8.0386 -1.5656 3.9817
35 1 10.0867 -2.4566 4.8907
36 1 10.2586 -0.7225 5.3240
37 1 12.1856 -1.9053 3.8397
38 1 11.6304 -0.2609 3.4047
39 1 14.4799 -1.3362 2.1531
40 1 5.0754 -1.2433 1.7692
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001028272005.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:55:18
Heat of formation + Delta-G solvation = 59.712673 kcal
Electronic energy + Delta-G solvation = -22880.999960 eV
Core-core repulsion = 19469.122903 eV
Total energy + Delta-G solvation = -3411.877057 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 299.137 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.76245 -40.32985 -39.20517 -35.92870 -34.96884 -34.40305 -33.65800 -32.15996
-31.33373 -30.17548 -26.96249 -26.37966 -25.08783 -24.61266 -22.23405 -21.75973
-21.19144 -20.39726 -19.28780 -18.47693 -17.99359 -17.13481 -16.89519 -16.47079
-16.44151 -16.17620 -15.72821 -15.48876 -15.27342 -14.71288 -14.55532 -14.26363
-13.98728 -13.71304 -13.63133 -13.41654 -13.02260 -12.87407 -12.66491 -12.32212
-12.06536 -11.93575 -11.84215 -11.69628 -11.47270 -11.40122 -11.32967 -11.10141
-10.68338 -10.64678 -10.25720 -9.89862 -8.86522 -7.88303 -5.25777 -0.79670
0.08117 1.40340 1.44014 1.47150 1.52750 1.62827 1.99421 2.15209
2.49131 2.86983 2.91055 3.30663 3.46826 3.57781 3.70117 3.78408
3.91157 3.98916 3.99869 4.03328 4.27591 4.42990 4.49538 4.55197
4.68590 4.74273 4.91847 4.97409 5.01090 5.03971 5.15435 5.19866
5.30845 5.40659 5.47659 5.55658 5.67821 5.79513 6.23185 6.43566
6.45792 6.63434 7.08607 7.10790 7.76396 8.41643 9.21955
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.024173 B = 0.002971 C = 0.002745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1158.032018 B = 9422.569377 C =10196.220650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C -0.218 4.218
3 C 0.238 3.762
4 C -0.146 4.146
5 C -0.018 4.018
6 C -0.189 4.189
7 C 0.558 3.442
8 O -0.581 6.581
9 N -0.698 5.698
10 C 0.128 3.872
11 C 0.147 3.853
12 H 0.053 0.947
13 C -0.116 4.116
14 C -0.133 4.133
15 C 0.172 3.828
16 N -0.610 5.610
17 C -0.240 4.240
18 H 0.076 0.924
19 C -0.060 4.060
20 N -0.945 5.945
21 Si 0.971 3.029
22 H -0.283 1.283
23 H -0.293 1.293
24 H -0.274 1.274
25 C 0.149 3.851
26 N -0.494 5.494
27 H 0.273 0.727
28 H 0.174 0.826
29 H 0.155 0.845
30 H 0.415 0.585
31 H 0.041 0.959
32 H 0.038 0.962
33 H 0.068 0.932
34 H 0.108 0.892
35 H 0.070 0.930
36 H 0.083 0.917
37 H 0.037 0.963
38 H -0.008 1.008
39 H 0.248 0.752
40 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.027 2.617 -0.317 26.160
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C -0.218 4.218
3 C 0.104 3.896
4 C -0.166 4.166
5 C -0.044 4.044
6 C -0.195 4.195
7 C 0.345 3.655
8 O -0.462 6.462
9 N -0.351 5.351
10 C 0.002 3.998
11 C 0.039 3.961
12 H 0.071 0.929
13 C -0.153 4.153
14 C -0.172 4.172
15 C 0.047 3.953
16 N -0.335 5.335
17 C -0.369 4.369
18 H 0.094 0.906
19 C -0.254 4.254
20 N -0.593 5.593
21 Si 0.799 3.201
22 H -0.209 1.209
23 H -0.219 1.219
24 H -0.200 1.200
25 C -0.011 4.011
26 N -0.202 5.202
27 H 0.288 0.712
28 H 0.191 0.809
29 H 0.173 0.827
30 H 0.253 0.747
31 H 0.059 0.941
32 H 0.057 0.943
33 H 0.087 0.913
34 H 0.126 0.874
35 H 0.088 0.912
36 H 0.101 0.899
37 H 0.055 0.945
38 H 0.010 0.990
39 H 0.057 0.943
40 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -25.739 2.549 -0.292 25.867
hybrid contribution 1.655 0.118 -1.248 2.076
sum -24.084 2.668 -1.540 24.280
Atomic orbital electron populations
1.25998 0.96317 0.93590 0.94300 1.19589 0.91508 1.05506 1.05229
1.17129 0.89286 0.92434 0.90799 1.22249 0.93666 1.00552 1.00100
1.21848 0.94265 0.92813 0.95489 1.21005 0.92968 1.04803 1.00690
1.18384 0.87525 0.78552 0.81069 1.90788 1.68060 1.46506 1.40804
1.45753 1.07514 1.52208 1.29579 1.21776 0.78213 0.99671 1.00122
1.21368 0.84923 0.96002 0.93788 0.92916 1.22671 0.98832 1.00812
0.93020 1.22891 0.95211 1.01709 0.97369 1.21296 0.94540 0.95058
0.84420 1.44736 1.01104 1.72029 1.15619 1.19259 0.89560 1.26709
1.01418 0.90591 1.25664 0.98269 1.00802 1.00625 1.70133 1.09269
1.46001 1.33893 0.85271 0.77441 0.78299 0.79063 1.20891 1.21929
1.19981 1.23272 0.88454 0.93426 0.95935 1.67817 1.09914 1.18623
1.23854 0.71163 0.80890 0.82694 0.74687 0.94060 0.94334 0.91348
0.87409 0.91150 0.89878 0.94457 0.99028 0.94308 0.79261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.83 19.25 74.32 1.43 0.61 16
2 C -0.22 -3.73 13.43 30.02 0.40 -3.32 16
3 C 0.24 4.84 6.59 40.58 0.27 5.11 16
4 C -0.15 -2.52 9.77 22.57 0.22 -2.30 16
5 C -0.02 -0.38 9.70 22.69 0.22 -0.16 16
6 C -0.19 -4.43 5.89 -19.95 -0.12 -4.54 16
7 C 0.56 16.95 7.77 86.74 0.67 17.63 16
8 O -0.58 -23.06 16.41 -3.96 -0.07 -23.12 16
9 N -0.70 -19.39 5.36 -466.14 -2.50 -21.88 16
10 C 0.13 4.83 5.09 86.38 0.44 5.27 16
11 C 0.15 5.44 3.22 45.34 0.15 5.58 16
12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
13 C -0.12 -3.32 6.07 31.83 0.19 -3.13 16
14 C -0.13 -4.47 7.10 32.03 0.23 -4.24 16
15 C 0.17 8.25 5.42 86.86 0.47 8.72 16
16 N -0.61 -30.27 3.13 -668.26 -2.09 -32.36 16
17 C -0.24 -13.36 9.73 84.03 0.82 -12.54 16
18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16
19 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16
20 N -0.95 -56.94 10.54 21.65 0.23 -56.71 16
21 Si 0.97 46.50 29.55 68.60 2.03 48.53 16
22 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16
23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16
24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
25 C 0.15 2.95 10.70 85.09 0.91 3.86 16
26 N -0.49 -10.95 10.27 -188.03 -1.93 -12.88 16
27 H 0.27 -0.17 7.80 -4.42 -0.03 -0.20 16
28 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16
29 H 0.16 3.14 7.73 -2.91 -0.02 3.12 16
30 H 0.41 8.08 6.29 -92.71 -0.58 7.49 16
31 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16
32 H 0.04 1.72 7.86 -2.39 -0.02 1.70 16
33 H 0.07 1.95 7.78 -2.39 -0.02 1.93 16
34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16
35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
36 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16
37 H 0.04 2.03 6.86 -2.39 -0.02 2.02 16
38 H -0.01 -0.45 8.08 -2.39 -0.02 -0.47 16
39 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16
40 H 0.19 2.54 6.40 -2.91 -0.02 2.52 16
Total: -1.00 -77.48 345.40 2.92 -74.56
By element:
Atomic # 1 Polarization: 9.81 SS G_CDS: 0.47 Total: 10.29 kcal
Atomic # 6 Polarization: 6.82 SS G_CDS: 6.77 Total: 13.58 kcal
Atomic # 7 Polarization: -117.55 SS G_CDS: -6.29 Total: -123.84 kcal
Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.12 kcal
Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal
Total: -77.48 2.92 -74.56 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028272005.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.274 kcal
(2) G-P(sol) polarization free energy of solvation -77.479 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.795 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds