Wall clock time and date at job start Tue Mar 31 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39631 * 120.49237 * 144.46114 * 3 2 1 5 5 N 1.31751 * 120.88695 * 179.97438 * 4 3 2 6 6 C 1.31735 * 122.03512 * 359.72646 * 5 4 3 7 7 C 1.39602 * 120.87920 * 0.54167 * 6 5 4 8 8 C 1.47858 * 120.49039 * 179.74774 * 7 6 5 9 9 O 1.21556 * 119.99955 * 179.72575 * 8 7 6 10 10 N 1.34774 * 120.00121 * 359.72250 * 8 7 6 11 11 C 1.46500 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47114 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.64142 * 305.70316 * 12 11 10 14 14 C 1.55150 * 110.72108 * 182.55796 * 12 11 10 15 15 C 1.54913 * 101.58162 * 206.13560 * 14 12 11 16 16 N 1.47423 * 104.83095 * 37.01013 * 15 14 12 17 17 C 1.36937 * 125.64707 * 155.91227 * 16 15 14 18 18 H 1.08005 * 119.99757 * 342.04054 * 17 16 15 19 19 C 1.38809 * 120.00337 * 162.05170 * 17 16 15 20 20 N 1.31618 * 120.00566 * 156.23433 * 19 17 16 21 21 Si 1.86803 * 119.99486 * 336.24028 * 19 17 16 22 22 H 1.48490 * 109.47497 * 84.67106 * 21 19 17 23 23 H 1.48508 * 109.46950 * 204.66763 * 21 19 17 24 24 H 1.48497 * 109.47085 * 324.66439 * 21 19 17 25 25 C 1.47324 * 108.73652 * 335.71313 * 16 15 14 26 26 C 1.39678 * 120.48747 * 324.44366 * 3 2 1 27 27 H 4.52736 * 13.92831 * 0.02562 * 4 2 1 28 28 H 1.08004 * 119.55780 * 359.96032 * 4 3 2 29 29 H 1.08004 * 119.56304 * 180.26937 * 6 5 4 30 30 H 0.96997 * 119.99866 * 359.97438 * 10 8 7 31 31 H 1.08999 * 109.47463 * 299.99805 * 11 10 8 32 32 H 1.09002 * 109.47502 * 60.00171 * 11 10 8 33 33 H 1.08998 * 111.00410 * 324.20667 * 14 12 11 34 34 H 1.08998 * 111.00773 * 88.02527 * 14 12 11 35 35 H 1.08998 * 110.37060 * 155.84893 * 15 14 12 36 36 H 1.09007 * 110.36698 * 278.06022 * 15 14 12 37 37 H 0.96998 * 120.00410 * 179.97438 * 20 19 17 38 38 H 1.08993 * 110.06098 * 241.87506 * 25 16 15 39 39 H 1.08997 * 109.84583 * 120.61063 * 25 16 15 40 40 H 1.07999 * 120.92141 * 0.03971 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 0.9800 -0.6994 5 7 4.6316 0.9883 -0.7042 6 6 5.3384 0.0872 -0.0532 7 6 4.7119 -0.9311 0.6675 8 6 5.5137 -1.9412 1.3906 9 8 4.9589 -2.8212 2.0194 10 7 6.8598 -1.8864 1.3524 11 6 7.6542 -2.8876 2.0684 12 6 9.1428 -2.5997 1.8630 13 1 9.3793 -2.5379 0.8007 14 6 10.0121 -3.6813 2.5570 15 6 11.3215 -2.8999 2.8302 16 7 10.8815 -1.5375 3.1818 17 6 11.5918 -0.6379 3.9310 18 1 12.4059 -0.9778 4.5542 19 6 11.2655 0.7106 3.8898 20 7 11.5850 1.4962 4.8965 21 14 10.3729 1.4105 2.4057 22 1 8.9113 1.2005 2.5626 23 1 10.6553 2.8646 2.2985 24 1 10.8426 0.7232 1.1760 25 6 9.5532 -1.3017 2.5899 26 6 3.3151 -0.9783 0.6999 27 1 -1.0500 -0.0004 0.0009 28 1 2.7746 1.7409 -1.2438 29 1 6.4171 0.1344 -0.0808 30 1 7.3026 -1.1845 0.8503 31 1 7.4190 -2.8454 3.1319 32 1 7.4202 -3.8803 1.6837 33 1 9.5533 -4.0127 3.4885 34 1 10.1917 -4.5250 1.8906 35 1 11.8652 -3.3493 3.6612 36 1 11.9451 -2.8802 1.9363 37 1 11.3573 2.4386 4.8675 38 1 9.6020 -0.4777 1.8781 39 1 8.8332 -1.0734 3.3758 40 1 2.7986 -1.7504 1.2508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028793301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:50 Heat of formation + Delta-G solvation = 61.944618 kcal Electronic energy + Delta-G solvation = -23051.001601 eV Core-core repulsion = 19639.221328 eV Total energy + Delta-G solvation = -3411.780273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84324 -40.42532 -39.41745 -36.23639 -35.41301 -34.53742 -33.60104 -32.30169 -31.54092 -30.15683 -27.60153 -26.07810 -25.41152 -24.56110 -22.49695 -21.88546 -21.59685 -20.12134 -19.00424 -18.53633 -18.11911 -17.79227 -17.65600 -16.66744 -16.52521 -16.21412 -15.87132 -15.42980 -15.24366 -14.96013 -14.83773 -14.36011 -14.28663 -14.20396 -13.71721 -13.47577 -13.22293 -13.00828 -12.74006 -12.65849 -12.39387 -12.15044 -11.86737 -11.82996 -11.59404 -11.49194 -11.21886 -11.02414 -10.76134 -10.63857 -10.26108 -9.93718 -9.07634 -8.19674 -5.44182 -0.68636 -0.26761 1.26146 1.36921 1.47829 1.50766 1.62218 1.96922 2.08301 2.40584 2.81348 2.99654 3.02607 3.22138 3.31124 3.55706 3.58336 3.64207 3.71765 3.81088 3.87038 4.02937 4.27518 4.36942 4.47305 4.55247 4.64386 4.71308 4.78005 4.79236 4.86658 4.98244 5.03393 5.10748 5.16294 5.27021 5.33913 5.45045 5.68318 6.08831 6.28426 6.45967 6.61761 6.76043 6.95331 7.53745 8.10026 9.00676 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.017825 B = 0.003706 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.454671 B = 7554.359153 C = 8614.748284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.209 4.209 3 C -0.044 4.044 4 C 0.148 3.852 5 N -0.496 5.496 6 C 0.140 3.860 7 C -0.191 4.191 8 C 0.566 3.434 9 O -0.568 6.568 10 N -0.715 5.715 11 C 0.138 3.862 12 C -0.100 4.100 13 H 0.109 0.891 14 C -0.106 4.106 15 C 0.122 3.878 16 N -0.631 5.631 17 C -0.237 4.237 18 H 0.058 0.942 19 C -0.045 4.045 20 N -0.958 5.958 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.313 1.313 24 H -0.263 1.263 25 C 0.116 3.884 26 C -0.004 4.004 27 H 0.266 0.734 28 H 0.193 0.807 29 H 0.178 0.822 30 H 0.409 0.591 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.307 -6.924 -15.276 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.210 4.210 3 C -0.046 4.046 4 C -0.010 4.010 5 N -0.203 5.203 6 C -0.018 4.018 7 C -0.196 4.196 8 C 0.353 3.647 9 O -0.448 6.448 10 N -0.366 5.366 11 C 0.015 3.985 12 C -0.119 4.119 13 H 0.127 0.873 14 C -0.145 4.145 15 C -0.003 4.003 16 N -0.358 5.358 17 C -0.366 4.366 18 H 0.076 0.924 19 C -0.239 4.239 20 N -0.605 5.605 21 Si 0.782 3.218 22 H -0.194 1.194 23 H -0.242 1.242 24 H -0.189 1.189 25 C -0.008 4.008 26 C -0.030 4.030 27 H 0.282 0.718 28 H 0.210 0.790 29 H 0.194 0.806 30 H 0.246 0.754 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.137 -6.737 -15.176 26.099 hybrid contribution -0.119 0.632 0.305 0.712 sum -20.256 -6.105 -14.871 25.860 Atomic orbital electron populations 1.25897 0.96423 0.95433 0.95448 1.19773 0.91799 1.04782 1.04655 1.16947 0.89185 0.97560 1.00930 1.23634 0.89292 0.95301 0.92730 1.67802 1.08432 1.24712 1.19345 1.23364 1.01428 0.87769 0.89245 1.20826 0.94906 0.99597 1.04274 1.18123 0.82357 0.84127 0.80121 1.90764 1.71935 1.37720 1.44413 1.45944 1.05530 1.32484 1.52604 1.21411 0.88275 0.92186 0.96663 1.22410 0.93549 0.94682 1.01292 0.87295 1.22701 0.93766 0.96780 1.01236 1.21890 0.96433 0.83883 0.98051 1.45005 1.16134 1.13524 1.61146 1.18633 1.13482 0.87656 1.16782 0.92432 1.25690 1.01485 0.96393 1.00324 1.70000 1.53379 1.06058 1.31036 0.85838 0.78919 0.75318 0.81722 1.19414 1.24223 1.18865 1.21897 0.87031 0.96880 0.95014 1.21883 0.92269 0.96032 0.92836 0.71809 0.79044 0.80559 0.75403 0.92392 0.88716 0.90813 0.86806 0.93777 0.94500 0.92983 0.96400 0.96104 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 19.25 74.32 1.43 0.18 16 2 C -0.21 -3.52 13.27 30.01 0.40 -3.12 16 3 C -0.04 -0.86 5.73 -21.35 -0.12 -0.98 16 4 C 0.15 2.69 10.90 85.04 0.93 3.62 16 5 N -0.50 -10.76 10.33 -193.75 -2.00 -12.76 16 6 C 0.14 2.98 10.71 85.04 0.91 3.89 16 7 C -0.19 -4.46 5.88 -20.03 -0.12 -4.58 16 8 C 0.57 15.24 7.78 86.79 0.68 15.91 16 9 O -0.57 -18.77 16.41 -3.89 -0.06 -18.83 16 10 N -0.71 -17.29 5.38 -465.95 -2.51 -19.80 16 11 C 0.14 3.41 5.00 86.38 0.43 3.84 16 12 C -0.10 -2.67 2.98 -9.61 -0.03 -2.70 16 13 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.11 -2.71 6.54 31.99 0.21 -2.50 16 15 C 0.12 4.33 7.23 86.86 0.63 4.96 16 16 N -0.63 -29.53 3.22 -691.22 -2.22 -31.75 16 17 C -0.24 -13.72 10.56 84.03 0.89 -12.83 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 19 C -0.04 -2.66 5.43 84.86 0.46 -2.20 16 20 N -0.96 -61.45 13.97 21.65 0.30 -61.15 16 21 Si 0.95 46.48 24.38 68.60 1.67 48.16 16 22 H -0.27 -12.11 6.83 99.48 0.68 -11.43 16 23 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 24 H -0.26 -11.99 6.87 99.48 0.68 -11.30 16 25 C 0.12 4.59 4.55 86.67 0.39 4.98 16 26 C 0.00 -0.09 9.44 22.99 0.22 0.13 16 27 H 0.27 0.32 7.80 -4.42 -0.03 0.29 16 28 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.18 3.07 6.41 -2.91 -0.02 3.05 16 30 H 0.41 8.53 6.46 -92.71 -0.60 7.93 16 31 H 0.06 1.68 8.01 -2.39 -0.02 1.66 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 38 H 0.02 0.75 3.55 -2.39 -0.01 0.74 16 39 H 0.02 0.91 7.73 -2.39 -0.02 0.89 16 40 H 0.15 3.30 7.73 -2.91 -0.02 3.28 16 Total: -1.00 -78.17 340.63 2.90 -75.27 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.42 Total: 12.26 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 7.30 Total: 8.60 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -6.43 Total: -125.46 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.83 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.67 Total: 48.16 kcal Total: -78.17 2.90 -75.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028793301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.218 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds