Wall clock time and date at job start Tue Mar 31 2020 03:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39993 * 120.45840 * 106.49783 * 3 2 1 5 5 C 1.38214 * 118.36548 * 179.97438 * 4 3 2 6 6 C 1.39495 * 119.20987 * 0.02562 * 5 4 3 7 7 C 1.47994 * 119.57182 * 179.97438 * 6 5 4 8 8 O 1.21536 * 119.99752 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99974 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47114 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.92180 * 57.44684 * 11 10 9 13 13 C 1.55155 * 111.00532 * 181.35298 * 11 10 9 14 14 C 1.54327 * 102.94571 * 153.57522 * 13 11 10 15 15 N 1.47024 * 107.26774 * 337.80617 * 14 13 11 16 16 C 1.36941 * 125.64618 * 179.20447 * 15 14 13 17 17 H 1.08005 * 119.99780 * 179.68989 * 16 15 14 18 18 C 1.38813 * 119.99913 * 359.69358 * 16 15 14 19 19 N 1.31616 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47563 * 59.99703 * 20 18 16 22 22 H 1.48504 * 109.46777 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47166 * 299.99426 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 15 14 13 25 25 N 1.32821 * 120.85746 * 0.25908 * 6 5 4 26 26 C 1.31299 * 121.78796 * 359.47070 * 25 6 5 27 27 H 4.52944 * 13.94734 * 0.02562 * 4 2 1 28 28 H 1.07995 * 120.81741 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.39669 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00160 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.46937 * 60.00106 * 10 9 7 32 32 H 1.09002 * 109.47231 * 300.00009 * 10 9 7 33 33 H 1.08999 * 110.71965 * 271.93488 * 13 11 10 34 34 H 1.09000 * 110.72417 * 35.03508 * 13 11 10 35 35 H 1.08995 * 109.88184 * 218.39040 * 14 13 11 36 36 H 1.09002 * 109.88385 * 97.22047 * 14 13 11 37 37 H 0.97001 * 119.99407 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.36518 * 142.96440 * 24 15 14 39 39 H 1.08995 * 110.36673 * 265.17549 * 24 15 14 40 40 H 1.08003 * 119.64788 * 180.25001 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3156 0.3436 -1.1571 5 6 4.6968 0.3305 -1.1085 6 6 5.3328 -0.0219 0.0820 7 6 6.8114 -0.0392 0.1428 8 8 7.4634 0.2528 -0.8404 9 7 7.4348 -0.3788 1.2884 10 6 8.8984 -0.3965 1.3484 11 6 9.3463 -0.8129 2.7508 12 1 8.9365 -1.7872 3.0170 13 6 10.8938 -0.8107 2.8640 14 6 11.1300 -0.5635 4.3689 15 7 9.9179 0.0756 4.9017 16 6 9.7176 0.4449 6.2051 17 1 8.7897 0.9145 6.4968 18 6 10.7070 0.2158 7.1513 19 7 11.8375 -0.3568 6.7959 20 14 10.4334 0.7189 8.9293 21 1 9.2486 0.0050 9.4692 22 1 11.6315 0.3671 9.7332 23 1 10.2027 2.1842 8.9992 24 6 8.9564 0.2587 3.7993 25 7 4.6286 -0.3474 1.1601 26 6 3.3156 -0.3421 1.1562 27 1 -1.0500 0.0004 0.0005 28 1 2.7964 0.6128 -2.0650 29 1 5.2768 0.5890 -1.9821 30 1 6.9144 -0.6122 2.0730 31 1 9.2833 0.5983 1.1241 32 1 9.2834 -1.1083 0.6181 33 1 11.3038 -1.7746 2.5625 34 1 11.3231 -0.0066 2.2663 35 1 11.9874 0.0954 4.5061 36 1 11.3033 -1.5118 4.8776 37 1 12.5288 -0.5173 7.4572 38 1 7.9386 0.0917 4.1519 39 1 9.0509 1.2585 3.3756 40 1 2.7776 -0.6091 2.0538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028936430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:53 Heat of formation + Delta-G solvation = 78.376387 kcal Electronic energy + Delta-G solvation = -22558.318908 eV Core-core repulsion = 19147.251170 eV Total energy + Delta-G solvation = -3411.067738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89256 -39.19526 -37.59297 -34.85779 -34.61657 -32.69693 -32.39796 -31.12083 -29.73233 -28.27749 -26.00902 -24.95748 -23.99012 -23.32670 -21.04266 -19.94943 -19.85848 -19.54343 -18.14018 -17.13117 -16.73603 -16.05594 -15.76472 -15.45835 -15.23929 -14.76494 -14.56534 -14.15428 -13.97821 -13.64734 -13.42619 -13.03130 -12.81952 -12.31378 -12.06207 -11.92035 -11.70661 -11.38254 -11.32785 -10.88208 -10.75888 -10.55793 -10.24792 -10.23783 -10.12183 -9.97553 -9.84281 -9.71980 -9.62152 -9.25136 -8.92169 -8.57133 -6.80246 -5.68481 -3.01793 -0.02778 0.81112 2.19549 2.20427 2.95775 3.05417 3.42472 3.46491 3.47868 3.64336 3.65307 3.92555 4.34761 4.49712 4.52622 4.66780 4.82618 5.11794 5.26378 5.28965 5.35586 5.44993 5.54703 5.56596 5.67253 5.71204 5.92080 6.04667 6.08022 6.12347 6.37229 6.43005 6.54642 6.56270 6.71325 6.94720 6.97245 7.26946 7.58490 7.60356 7.66045 7.85272 8.14080 8.29103 9.25124 9.85487 10.51750 11.43318 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.002855 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.116100 B = 9805.255522 C =11135.679441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C -0.023 4.023 4 C -0.060 4.060 5 C -0.110 4.110 6 C 0.090 3.910 7 C 0.566 3.434 8 O -0.537 6.537 9 N -0.700 5.700 10 C 0.130 3.870 11 C -0.118 4.118 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.177 3.823 15 N -0.606 5.606 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.142 3.858 25 N -0.452 5.452 26 C 0.127 3.873 27 H 0.228 0.772 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.413 0.587 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.252 0.748 38 H 0.037 0.963 39 H 0.019 0.981 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 -1.113 -16.232 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C -0.025 4.025 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.048 4.048 7 C 0.350 3.650 8 O -0.414 6.414 9 N -0.350 5.350 10 C 0.007 3.993 11 C -0.138 4.138 12 H 0.099 0.901 13 C -0.173 4.173 14 C 0.053 3.947 15 N -0.333 5.333 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.015 3.985 25 N -0.162 5.162 26 C -0.034 4.034 27 H 0.244 0.756 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.250 0.750 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.606 -1.149 -15.943 23.780 hybrid contribution -1.056 0.384 0.633 1.290 sum -18.662 -0.765 -15.310 24.151 Atomic orbital electron populations 1.24976 0.95758 0.98045 0.98291 1.19660 0.91563 1.02201 1.02243 1.17167 0.88073 1.01666 0.95591 1.21674 0.93509 0.95572 0.97798 1.22069 0.94428 0.97419 0.99153 1.21392 0.94674 0.98298 0.90389 1.17785 0.85591 0.77974 0.83672 1.90791 1.65870 1.49277 1.35499 1.45952 1.08404 1.67076 1.13617 1.21500 0.78140 1.02035 0.97643 1.22615 0.97871 1.00413 0.92875 0.90083 1.22863 0.93186 1.00669 1.00623 1.21148 0.89533 0.97755 0.86295 1.44476 1.13740 1.71066 1.03973 1.19017 1.00691 1.33184 0.82747 0.90534 1.24803 0.96385 1.01124 0.98217 1.69955 1.06435 1.47918 1.32732 0.86195 0.76857 0.78193 0.84490 1.21177 1.21620 1.21207 1.21569 0.93689 0.94672 0.88549 1.67616 1.08335 1.11952 1.28316 1.22987 0.88993 0.94394 0.97001 0.75558 0.83630 0.82714 0.75010 0.91022 0.91339 0.91957 0.92180 0.93920 0.93524 0.93732 0.94480 0.96337 0.81423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 19.25 29.55 0.57 -0.33 16 2 C -0.16 -1.25 13.28 -38.84 -0.52 -1.76 16 3 C -0.02 -0.20 5.75 -106.69 -0.61 -0.81 16 4 C -0.06 -0.49 9.89 -38.93 -0.39 -0.87 16 5 C -0.11 -1.09 9.61 -39.12 -0.38 -1.46 16 6 C 0.09 1.10 6.75 -82.97 -0.56 0.54 16 7 C 0.57 8.13 7.80 -12.26 -0.10 8.03 16 8 O -0.54 -8.94 16.31 5.33 0.09 -8.85 16 9 N -0.70 -9.83 5.40 -61.21 -0.33 -10.16 16 10 C 0.13 1.92 5.12 -4.05 -0.02 1.90 16 11 C -0.12 -2.00 3.10 -88.47 -0.27 -2.27 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -2.47 6.42 -24.90 -0.16 -2.63 16 14 C 0.18 4.32 5.37 -3.06 -0.02 4.30 16 15 N -0.61 -15.60 3.39 -170.07 -0.58 -16.18 16 16 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.34 10.31 55.49 0.57 -26.77 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.14 2.90 6.41 -2.53 -0.02 2.89 16 25 N -0.45 -5.28 9.51 -9.49 -0.09 -5.37 16 26 C 0.13 1.21 10.92 -17.15 -0.19 1.02 16 27 H 0.23 0.44 7.80 -54.09 -0.42 0.02 16 28 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.16 1.40 7.63 -52.49 -0.40 0.99 16 30 H 0.41 5.55 7.65 -40.82 -0.31 5.24 16 31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 36 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.39 8.01 -51.93 -0.42 -0.02 16 40 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -33.27 348.17 -8.26 -41.53 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.24 Total: 1.68 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.90 Total: 1.61 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.43 Total: -58.47 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.27 -8.26 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028936430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.908 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds