Wall clock time and date at job start Tue Mar 31 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39986 * 120.46672 * 330.91012 * 3 2 1 5 5 C 1.38216 * 118.36903 * 180.29728 * 4 3 2 6 6 C 1.39488 * 119.21042 * 359.97438 * 5 4 3 7 7 C 1.47990 * 119.57193 * 180.02562 * 6 5 4 8 8 O 1.21543 * 119.99597 * 352.92367 * 7 6 5 9 9 N 1.34772 * 119.99988 * 172.92128 * 7 6 5 10 10 C 1.46501 * 120.00121 * 2.33513 * 9 7 6 11 11 C 1.46498 * 120.00022 * 182.33704 * 9 7 6 12 12 H 1.09003 * 110.64336 * 358.31076 * 11 9 7 13 13 C 1.55156 * 110.72361 * 234.97665 * 11 9 7 14 14 C 1.54905 * 101.58045 * 277.13863 * 13 11 9 15 15 N 1.47421 * 104.83299 * 322.98499 * 14 13 11 16 16 C 1.36934 * 125.65194 * 204.16368 * 15 14 13 17 17 H 1.07999 * 120.00439 * 179.97438 * 16 15 14 18 18 C 1.38820 * 120.00096 * 359.95840 * 16 15 14 19 19 N 1.31618 * 119.99474 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00305 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47187 * 90.00306 * 20 18 16 22 22 H 1.48501 * 109.47334 * 210.00287 * 20 18 16 23 23 H 1.48505 * 109.47133 * 330.00530 * 20 18 16 24 24 C 1.47020 * 108.70201 * 24.13011 * 15 14 13 25 25 N 1.32829 * 120.85896 * 0.02562 * 6 5 4 26 26 C 1.31290 * 121.78498 * 359.97438 * 25 6 5 27 27 H 4.52936 * 13.94745 * 0.02562 * 4 2 1 28 28 H 1.08004 * 120.81317 * 0.25359 * 4 3 2 29 29 H 1.08007 * 120.39210 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47254 * 83.97073 * 10 9 7 31 31 H 1.09002 * 109.47350 * 203.96933 * 10 9 7 32 32 H 1.09000 * 109.47081 * 323.97138 * 10 9 7 33 33 H 1.09000 * 110.99920 * 35.21126 * 13 11 9 34 34 H 1.08998 * 111.01013 * 159.06157 * 13 11 9 35 35 H 1.09004 * 110.36882 * 204.14972 * 14 13 11 36 36 H 1.09003 * 110.46243 * 81.87353 * 14 13 11 37 37 H 0.97005 * 120.00047 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.88405 * 239.51840 * 24 15 14 39 39 H 1.09000 * 109.88243 * 118.35600 * 24 15 14 40 40 H 1.08004 * 119.64623 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -1.0534 0.5866 5 6 4.6975 -1.0055 0.5675 6 6 5.3327 0.0824 -0.0312 7 6 6.8112 0.1416 -0.0567 8 8 7.4629 -0.6844 0.5517 9 7 7.4348 1.1113 -0.7545 10 6 6.6496 2.1370 -1.4458 11 6 8.8980 1.1399 -0.8218 12 1 9.3257 0.3289 -0.2323 13 6 9.4427 2.5136 -0.3491 14 6 9.3004 3.3641 -1.6360 15 7 9.6273 2.4399 -2.7371 16 6 10.0868 2.8038 -3.9747 17 1 10.2984 2.0475 -4.7160 18 6 10.2802 4.1449 -4.2765 19 7 10.0225 5.0666 -3.3730 20 14 10.9077 4.6413 -5.9645 21 1 9.7561 4.8584 -6.8766 22 1 11.6930 5.8966 -5.8512 23 1 11.7730 3.5634 -6.5076 24 6 9.3789 1.0628 -2.2862 25 7 4.6278 1.0661 -0.5789 26 6 3.3149 1.0578 -0.5813 27 1 -1.0499 -0.0011 0.0001 28 1 2.7976 -1.8833 1.0435 29 1 5.2780 -1.8011 1.0110 30 1 6.3909 2.9304 -0.7447 31 1 7.2362 2.5530 -2.2649 32 1 5.7376 1.6906 -1.8420 33 1 8.8317 2.9196 0.4571 34 1 10.4866 2.4365 -0.0451 35 1 10.0026 4.1977 -1.6194 36 1 8.2793 3.7311 -1.7392 37 1 10.1580 6.0037 -3.5837 38 1 10.2995 0.4821 -2.3441 39 1 8.6087 0.6032 -2.9055 40 1 2.7763 1.8760 -1.0362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033593495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:43 Heat of formation + Delta-G solvation = 117.698931 kcal Electronic energy + Delta-G solvation = -23685.135665 eV Core-core repulsion = 20275.773081 eV Total energy + Delta-G solvation = -3409.362584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90272 -39.27693 -37.37630 -34.88758 -34.20543 -32.53694 -32.02470 -30.81871 -29.16356 -27.92342 -26.26045 -25.21713 -24.01885 -23.84993 -21.30222 -20.14596 -19.46564 -18.97928 -17.42602 -17.10152 -16.78152 -15.97796 -15.86585 -15.37559 -14.87934 -14.67882 -14.08716 -13.95312 -13.74791 -13.67254 -13.09307 -12.80985 -12.40936 -12.12481 -11.98814 -11.83453 -11.67453 -11.52912 -11.13559 -11.02622 -10.87699 -10.78096 -10.32988 -10.11115 -10.09698 -9.99926 -9.84594 -9.53415 -9.10296 -9.01586 -8.61394 -8.16737 -6.83348 -5.65004 -3.06870 0.11718 0.93734 2.29738 2.34194 3.09585 3.16988 3.40396 3.45776 3.47467 3.74791 3.78069 4.06201 4.47086 4.49282 4.54982 4.80553 4.91225 5.33906 5.43881 5.46084 5.50058 5.51636 5.66502 5.75382 5.79039 5.90578 5.95877 6.17289 6.25873 6.34163 6.41870 6.59966 6.64490 6.68515 6.79115 7.03780 7.07787 7.48993 7.51186 7.63056 7.73412 7.86670 8.32168 8.36416 9.22084 9.82538 10.47247 11.38420 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003485 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.674088 B = 8032.519822 C = 8829.272063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.152 4.152 3 C -0.026 4.026 4 C -0.060 4.060 5 C -0.111 4.111 6 C 0.095 3.905 7 C 0.560 3.440 8 O -0.547 6.547 9 N -0.567 5.567 10 C 0.063 3.937 11 C 0.122 3.878 12 H 0.100 0.900 13 C -0.153 4.153 14 C 0.143 3.857 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.128 3.872 25 N -0.439 5.439 26 C 0.119 3.881 27 H 0.227 0.773 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.025 0.975 37 H 0.252 0.748 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.499 -9.197 8.408 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C -0.029 4.029 4 C -0.086 4.086 5 C -0.132 4.132 6 C -0.042 4.042 7 C 0.346 3.654 8 O -0.425 6.425 9 N -0.296 5.296 10 C -0.079 4.079 11 C 0.018 3.982 12 H 0.118 0.882 13 C -0.192 4.192 14 C 0.019 3.981 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.001 3.999 25 N -0.150 5.150 26 C -0.041 4.041 27 H 0.244 0.756 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.554 -8.726 8.204 19.631 hybrid contribution -0.509 -0.326 -0.542 0.812 sum -16.063 -9.051 7.662 19.966 Atomic orbital electron populations 1.24943 0.95738 0.98517 0.98443 1.19709 0.91601 1.02017 1.01970 1.17170 0.87958 0.96801 1.00956 1.21645 0.93489 0.97389 0.96062 1.22036 0.94369 0.98916 0.97841 1.21453 0.94823 0.91800 0.96136 1.17860 0.85581 0.81867 0.80110 1.90753 1.65767 1.40713 1.45310 1.47759 1.07140 1.26631 1.48037 1.22719 0.96763 0.90489 0.97918 1.22256 0.78141 0.99715 0.98063 0.88165 1.23338 1.00179 0.95495 1.00237 1.22154 1.00243 0.93507 0.82185 1.44535 1.77092 0.99448 1.11828 1.19064 1.35944 0.91633 0.88327 0.90541 1.24771 1.01923 0.95606 0.98275 1.69800 1.54856 0.99866 1.32465 0.86080 0.78323 0.77777 0.83344 1.21675 1.21706 1.20766 1.21630 0.97352 0.89320 0.91584 1.68363 1.07397 1.25267 1.13973 1.23191 0.89639 0.96347 0.94913 0.75638 0.83781 0.82846 0.92949 0.88659 0.88599 0.92006 0.90949 0.87676 0.95730 0.93755 0.94839 0.95523 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 19.25 29.55 0.57 -0.51 16 2 C -0.15 -1.37 13.28 -38.84 -0.52 -1.89 16 3 C -0.03 -0.27 5.75 -106.69 -0.61 -0.88 16 4 C -0.06 -0.57 9.89 -38.93 -0.39 -0.96 16 5 C -0.11 -1.28 9.61 -39.12 -0.38 -1.65 16 6 C 0.10 1.36 6.63 -82.97 -0.55 0.81 16 7 C 0.56 9.64 7.65 -12.27 -0.09 9.55 16 8 O -0.55 -10.40 15.70 5.33 0.08 -10.32 16 9 N -0.57 -10.18 2.82 -172.89 -0.49 -10.67 16 10 C 0.06 1.10 7.58 59.85 0.45 1.55 16 11 C 0.12 2.33 3.58 -66.10 -0.24 2.09 16 12 H 0.10 1.89 6.99 -51.93 -0.36 1.53 16 13 C -0.15 -3.00 6.53 -24.59 -0.16 -3.16 16 14 C 0.14 3.39 4.99 -2.53 -0.01 3.38 16 15 N -0.60 -15.11 2.97 -170.08 -0.51 -15.62 16 16 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.13 2.75 6.30 -3.07 -0.02 2.73 16 25 N -0.44 -5.90 5.98 -9.49 -0.06 -5.96 16 26 C 0.12 1.29 10.91 -17.15 -0.19 1.10 16 27 H 0.23 0.63 7.80 -54.09 -0.42 0.21 16 28 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.15 1.64 7.64 -52.48 -0.40 1.23 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.97 4.75 -51.93 -0.25 1.72 16 32 H 0.10 1.55 5.21 -52.60 -0.27 1.27 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 36 H 0.02 0.60 5.54 -51.93 -0.29 0.31 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 40 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -31.42 332.83 -7.59 -39.01 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.80 Total: 1.85 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.38 Total: 5.55 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.49 Total: -57.97 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.42 -7.59 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033593495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.712 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds