Wall clock time and date at job start Tue Mar 31 2020 03:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39986 * 120.46672 * 330.91012 * 3 2 1 5 5 C 1.38216 * 118.36903 * 180.29728 * 4 3 2 6 6 C 1.39488 * 119.21042 * 359.97438 * 5 4 3 7 7 C 1.47990 * 119.57193 * 180.02562 * 6 5 4 8 8 O 1.21543 * 119.99597 * 352.92367 * 7 6 5 9 9 N 1.34772 * 119.99988 * 172.92128 * 7 6 5 10 10 C 1.46501 * 120.00121 * 2.33513 * 9 7 6 11 11 C 1.46498 * 120.00022 * 182.33704 * 9 7 6 12 12 H 1.09003 * 110.64336 * 358.31076 * 11 9 7 13 13 C 1.55156 * 110.72361 * 234.97665 * 11 9 7 14 14 C 1.54905 * 101.58045 * 277.13863 * 13 11 9 15 15 N 1.47421 * 104.83299 * 322.98499 * 14 13 11 16 16 C 1.36934 * 125.65194 * 204.16368 * 15 14 13 17 17 H 1.07999 * 120.00439 * 179.97438 * 16 15 14 18 18 C 1.38820 * 120.00096 * 359.95840 * 16 15 14 19 19 N 1.31618 * 119.99474 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00305 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47187 * 90.00306 * 20 18 16 22 22 H 1.48501 * 109.47334 * 210.00287 * 20 18 16 23 23 H 1.48505 * 109.47133 * 330.00530 * 20 18 16 24 24 C 1.47020 * 108.70201 * 24.13011 * 15 14 13 25 25 N 1.32829 * 120.85896 * 0.02562 * 6 5 4 26 26 C 1.31290 * 121.78498 * 359.97438 * 25 6 5 27 27 H 4.52936 * 13.94745 * 0.02562 * 4 2 1 28 28 H 1.08004 * 120.81317 * 0.25359 * 4 3 2 29 29 H 1.08007 * 120.39210 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47254 * 83.97073 * 10 9 7 31 31 H 1.09002 * 109.47350 * 203.96933 * 10 9 7 32 32 H 1.09000 * 109.47081 * 323.97138 * 10 9 7 33 33 H 1.09000 * 110.99920 * 35.21126 * 13 11 9 34 34 H 1.08998 * 111.01013 * 159.06157 * 13 11 9 35 35 H 1.09004 * 110.36882 * 204.14972 * 14 13 11 36 36 H 1.09003 * 110.46243 * 81.87353 * 14 13 11 37 37 H 0.97005 * 120.00047 * 179.97438 * 19 18 16 38 38 H 1.08995 * 109.88405 * 239.51840 * 24 15 14 39 39 H 1.09000 * 109.88243 * 118.35600 * 24 15 14 40 40 H 1.08004 * 119.64623 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -1.0534 0.5866 5 6 4.6975 -1.0055 0.5675 6 6 5.3327 0.0824 -0.0312 7 6 6.8112 0.1416 -0.0567 8 8 7.4629 -0.6844 0.5517 9 7 7.4348 1.1113 -0.7545 10 6 6.6496 2.1370 -1.4458 11 6 8.8980 1.1399 -0.8218 12 1 9.3257 0.3289 -0.2323 13 6 9.4427 2.5136 -0.3491 14 6 9.3004 3.3641 -1.6360 15 7 9.6273 2.4399 -2.7371 16 6 10.0868 2.8038 -3.9747 17 1 10.2984 2.0475 -4.7160 18 6 10.2802 4.1449 -4.2765 19 7 10.0225 5.0666 -3.3730 20 14 10.9077 4.6413 -5.9645 21 1 9.7561 4.8584 -6.8766 22 1 11.6930 5.8966 -5.8512 23 1 11.7730 3.5634 -6.5076 24 6 9.3789 1.0628 -2.2862 25 7 4.6278 1.0661 -0.5789 26 6 3.3149 1.0578 -0.5813 27 1 -1.0499 -0.0011 0.0001 28 1 2.7976 -1.8833 1.0435 29 1 5.2780 -1.8011 1.0110 30 1 6.3909 2.9304 -0.7447 31 1 7.2362 2.5530 -2.2649 32 1 5.7376 1.6906 -1.8420 33 1 8.8317 2.9196 0.4571 34 1 10.4866 2.4365 -0.0451 35 1 10.0026 4.1977 -1.6194 36 1 8.2793 3.7311 -1.7392 37 1 10.1580 6.0037 -3.5837 38 1 10.2995 0.4821 -2.3441 39 1 8.6087 0.6032 -2.9055 40 1 2.7763 1.8760 -1.0362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033593495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:42 Heat of formation + Delta-G solvation = 99.907573 kcal Electronic energy + Delta-G solvation = -23685.907156 eV Core-core repulsion = 20275.773081 eV Total energy + Delta-G solvation = -3410.134076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.98100 -40.55259 -38.96161 -36.16001 -35.32346 -33.94472 -33.27571 -31.79273 -30.93422 -29.59675 -27.69393 -26.70067 -25.56596 -24.69649 -22.61790 -22.04330 -20.44896 -20.10996 -18.96641 -18.64676 -18.03955 -17.23926 -16.69385 -16.66138 -16.54308 -16.04034 -15.58214 -15.35007 -15.01941 -14.60965 -14.42521 -14.33006 -13.79964 -13.62131 -13.51169 -13.30128 -13.06457 -12.95222 -12.77449 -12.63003 -12.37933 -12.05089 -11.97946 -11.81627 -11.76845 -11.41968 -11.27359 -10.91766 -10.69982 -10.17328 -9.90421 -9.60253 -8.86430 -7.74532 -5.18853 -0.76342 0.12709 1.36625 1.48987 1.50056 1.58844 1.71667 1.86004 2.18070 2.51309 2.88309 2.93740 3.25969 3.35539 3.54340 3.71090 3.76343 3.86403 3.93632 3.99643 4.12394 4.27877 4.46050 4.62177 4.65346 4.67979 4.74274 4.82362 4.89164 4.92715 5.01755 5.07276 5.10417 5.22792 5.46637 5.49107 5.57465 5.68405 5.84166 6.31459 6.32882 6.49254 6.60976 6.99572 7.13171 7.78680 8.43085 9.26720 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003485 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.674088 B = 8032.519822 C = 8829.272063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.209 4.209 3 C -0.012 4.012 4 C -0.054 4.054 5 C -0.105 4.105 6 C 0.064 3.936 7 C 0.560 3.440 8 O -0.569 6.569 9 N -0.575 5.575 10 C 0.080 3.920 11 C 0.133 3.867 12 H 0.108 0.892 13 C -0.138 4.138 14 C 0.151 3.849 15 N -0.618 5.618 16 C -0.238 4.238 17 H 0.077 0.923 18 C -0.062 4.062 19 N -0.944 5.944 20 Si 0.979 3.021 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.129 3.871 25 N -0.459 5.459 26 C 0.110 3.890 27 H 0.264 0.736 28 H 0.176 0.824 29 H 0.159 0.841 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.247 0.753 38 H 0.037 0.963 39 H 0.022 0.978 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.143 -10.400 8.841 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.209 4.209 3 C -0.015 4.015 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.072 4.072 7 C 0.349 3.651 8 O -0.449 6.449 9 N -0.304 5.304 10 C -0.062 4.062 11 C 0.029 3.971 12 H 0.126 0.874 13 C -0.178 4.178 14 C 0.027 3.973 15 N -0.345 5.345 16 C -0.366 4.366 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.594 5.594 20 Si 0.807 3.193 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.003 3.997 25 N -0.170 5.170 26 C -0.050 4.050 27 H 0.280 0.720 28 H 0.193 0.807 29 H 0.177 0.823 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.206 -9.957 8.648 22.481 hybrid contribution 0.070 -0.008 -0.647 0.651 sum -18.137 -9.964 8.001 22.186 Atomic orbital electron populations 1.25893 0.96430 0.95536 0.95075 1.19808 0.91815 1.04666 1.04650 1.17325 0.89022 0.96040 0.99079 1.21965 0.92528 0.98074 0.95388 1.22123 0.95374 0.98038 0.97025 1.21073 0.93116 0.93735 0.99317 1.18289 0.87025 0.80805 0.79001 1.90721 1.66798 1.41306 1.46117 1.47771 1.06535 1.27297 1.48754 1.22536 0.96439 0.90460 0.96722 1.22035 0.79331 0.99426 0.96307 0.87397 1.23185 1.01016 0.94987 0.98575 1.21914 0.98505 0.93091 0.83819 1.44730 1.76982 1.01100 1.11651 1.19380 1.35844 0.91973 0.89444 0.90488 1.25554 1.02541 0.95626 1.01713 1.70039 1.55691 0.99711 1.33952 0.85077 0.77681 0.77212 0.79308 1.21385 1.21992 1.19794 1.21687 0.97346 0.87627 0.93028 1.68109 1.08762 1.25492 1.14642 1.23508 0.88784 0.97460 0.95230 0.71958 0.80664 0.82307 0.92743 0.92117 0.87214 0.90531 0.90289 0.91042 0.96828 0.94307 0.94466 0.96047 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 19.25 74.32 1.43 0.40 16 2 C -0.21 -3.10 13.28 30.01 0.40 -2.70 16 3 C -0.01 -0.22 5.75 -21.20 -0.12 -0.34 16 4 C -0.05 -0.90 9.89 22.69 0.22 -0.68 16 5 C -0.10 -2.29 9.61 22.57 0.22 -2.07 16 6 C 0.06 1.79 6.63 41.88 0.28 2.07 16 7 C 0.56 19.35 7.65 86.83 0.66 20.01 16 8 O -0.57 -21.61 15.70 -3.85 -0.06 -21.67 16 9 N -0.57 -20.85 2.82 -819.19 -2.31 -23.16 16 10 C 0.08 2.87 7.58 127.77 0.97 3.84 16 11 C 0.13 5.12 3.58 46.18 0.17 5.29 16 12 H 0.11 4.04 6.99 -2.39 -0.02 4.02 16 13 C -0.14 -5.46 6.53 31.98 0.21 -5.25 16 14 C 0.15 7.39 4.99 86.85 0.43 7.82 16 15 N -0.62 -31.85 2.97 -692.01 -2.06 -33.91 16 16 C -0.24 -13.31 10.27 84.04 0.86 -12.44 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 18 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 19 N -0.94 -55.44 10.09 21.65 0.22 -55.22 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.13 5.65 6.30 86.73 0.55 6.20 16 25 N -0.46 -12.13 5.98 -183.93 -1.10 -13.23 16 26 C 0.11 2.25 10.91 85.18 0.93 3.18 16 27 H 0.26 -0.03 7.80 -4.42 -0.03 -0.06 16 28 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.16 3.21 7.64 -2.91 -0.02 3.19 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.60 4.75 -2.39 -0.01 2.59 16 32 H 0.11 3.60 5.21 -3.70 -0.02 3.58 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.07 4.01 5.87 -2.38 -0.01 3.99 16 36 H 0.01 0.70 5.54 -2.39 -0.01 0.69 16 37 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 40 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.41 332.83 5.44 -63.97 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.05 Total: 13.28 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.67 Total: 22.32 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.25 Total: -125.51 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.06 Total: -21.67 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.41 5.44 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033593495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.877 kcal (2) G-P(sol) polarization free energy of solvation -69.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds