Wall clock time and date at job start Tue Mar 31 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39640 * 120.48937 * 142.13610 * 3 2 1 5 5 N 1.31758 * 120.88048 * 180.30630 * 4 3 2 6 6 C 1.31727 * 122.04094 * 359.71548 * 5 4 3 7 7 C 1.39607 * 120.87570 * 0.02562 * 6 5 4 8 8 C 1.47862 * 120.48981 * 180.02562 * 7 6 5 9 9 O 1.21549 * 120.00232 * 149.17468 * 8 7 6 10 10 N 1.34785 * 119.99611 * 329.17476 * 8 7 6 11 11 C 1.46496 * 120.00094 * 4.11290 * 10 8 7 12 12 C 1.46497 * 119.99701 * 184.10977 * 10 8 7 13 13 C 1.53000 * 109.47260 * 86.39085 * 12 10 8 14 14 H 1.08996 * 112.96501 * 295.89115 * 13 12 10 15 15 C 1.53949 * 113.76612 * 67.56265 * 13 12 10 16 16 C 1.53947 * 86.28909 * 137.91092 * 15 13 12 17 17 N 1.47580 * 113.77207 * 164.20674 * 13 12 10 18 18 C 1.36931 * 134.49191 * 41.06853 * 17 13 12 19 19 H 1.08003 * 120.00058 * 346.96289 * 18 17 13 20 20 C 1.38814 * 120.00149 * 166.96094 * 18 17 13 21 21 N 1.31620 * 120.00269 * 166.32581 * 20 18 17 22 22 Si 1.86799 * 119.99808 * 346.33296 * 20 18 17 23 23 H 1.48494 * 109.47662 * 87.11570 * 22 20 18 24 24 H 1.48504 * 109.47167 * 207.11755 * 22 20 18 25 25 H 1.48500 * 109.47179 * 327.11114 * 22 20 18 26 26 C 1.39678 * 120.49015 * 321.89357 * 3 2 1 27 27 H 4.52739 * 13.92901 * 359.97438 * 4 2 1 28 28 H 1.07998 * 119.55916 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.56243 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.47087 * 93.31078 * 11 10 8 31 31 H 1.09004 * 109.46790 * 213.31574 * 11 10 8 32 32 H 1.08996 * 109.46998 * 333.30544 * 11 10 8 33 33 H 1.08995 * 109.47136 * 206.39103 * 12 10 8 34 34 H 1.09001 * 109.47119 * 326.39378 * 12 10 8 35 35 H 1.08997 * 113.74172 * 252.25203 * 15 13 12 36 36 H 1.09002 * 113.74483 * 23.45941 * 15 13 12 37 37 H 1.08997 * 113.77124 * 90.69566 * 16 15 13 38 38 H 1.09000 * 113.76833 * 221.98011 * 16 15 13 39 39 H 0.96993 * 120.00416 * 180.02562 * 21 20 18 40 40 H 1.07998 * 120.91893 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3140 0.9509 -0.7386 5 7 4.6316 0.9549 -0.7489 6 6 5.3384 0.0771 -0.0670 7 6 4.7118 -0.9048 0.7026 8 6 5.5136 -1.8856 1.4651 9 8 5.0856 -2.3414 2.5074 10 7 6.7191 -2.2742 1.0042 11 6 7.2748 -1.6588 -0.2036 12 6 7.4738 -3.3119 1.7112 13 6 7.0359 -4.6904 1.2122 14 1 5.9928 -4.9125 1.4372 15 6 7.4297 -4.9753 -0.2486 16 6 7.8131 -6.3857 0.2350 17 7 7.9668 -5.7771 1.5732 18 6 8.6841 -6.0928 2.6961 19 1 8.7921 -5.3679 3.4894 20 6 9.2724 -7.3444 2.8148 21 7 10.1742 -7.5619 3.7486 22 14 8.7845 -8.7201 1.6492 23 1 9.6201 -8.6505 0.4237 24 1 8.9919 -10.0308 2.3159 25 1 7.3532 -8.5730 1.2815 26 6 3.3151 -0.9461 0.7428 27 1 -1.0501 -0.0010 0.0001 28 1 2.7745 1.6892 -1.3133 29 1 6.4170 0.1174 -0.1039 30 1 7.9126 -0.8204 0.0763 31 1 7.8629 -2.3965 -0.7495 32 1 6.4621 -1.3018 -0.8362 33 1 8.5390 -3.1787 1.5224 34 1 7.2820 -3.2352 2.7814 35 1 6.5877 -4.9626 -0.9406 36 1 8.2761 -4.3842 -0.5982 37 1 6.9989 -7.1077 0.1735 38 1 8.7447 -6.7580 -0.1911 39 1 10.5856 -8.4364 3.8313 40 1 2.7986 -1.6923 1.3283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085809411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:37 Heat of formation + Delta-G solvation = 144.483330 kcal Electronic energy + Delta-G solvation = -23355.582547 eV Core-core repulsion = 19947.381421 eV Total energy + Delta-G solvation = -3408.201126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10085 -39.42635 -38.11782 -35.66526 -34.62797 -32.74984 -32.20391 -31.16262 -28.83900 -28.38490 -26.98835 -24.77442 -24.41970 -23.16340 -22.72706 -20.54281 -19.43711 -18.78069 -17.58632 -17.28669 -16.86699 -16.68081 -15.85645 -15.70322 -15.09296 -15.05184 -14.66079 -14.10898 -13.84671 -13.59358 -13.38702 -13.17886 -12.98751 -12.96826 -12.45710 -12.12067 -11.85489 -11.82722 -11.59010 -11.20313 -11.13884 -10.72618 -10.40291 -10.23361 -10.12921 -10.09606 -9.93179 -9.65864 -9.38591 -9.13529 -8.93822 -8.51868 -7.14490 -5.88772 -3.22486 0.17998 0.60789 2.27056 2.42494 2.78877 2.97854 3.34558 3.45223 3.46268 3.57719 3.72353 3.99632 4.27424 4.39833 4.46661 4.55484 4.66524 4.82438 4.94819 5.05727 5.18384 5.18623 5.32698 5.44150 5.51720 5.56666 5.63669 5.71711 5.76239 5.88405 6.06800 6.10016 6.19609 6.30527 6.36381 6.46503 6.51343 6.99088 7.06671 7.19761 7.34318 7.41919 8.09240 8.36866 8.70487 9.65890 10.29890 11.28162 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.003225 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.887504 B = 8680.631165 C = 8936.662576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.047 4.047 4 C 0.141 3.859 5 N -0.483 5.483 6 C 0.123 3.877 7 C -0.174 4.174 8 C 0.557 3.443 9 O -0.524 6.524 10 N -0.598 5.598 11 C 0.056 3.944 12 C 0.119 3.881 13 C 0.133 3.867 14 H 0.052 0.948 15 C -0.145 4.145 16 C 0.097 3.903 17 N -0.616 5.616 18 C -0.227 4.227 19 H 0.100 0.900 20 C 0.015 3.985 21 N -0.921 5.921 22 Si 0.884 3.116 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.270 1.270 26 C 0.002 3.998 27 H 0.228 0.772 28 H 0.164 0.836 29 H 0.182 0.818 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.262 0.738 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 17.658 -13.015 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C -0.049 4.049 4 C -0.017 4.017 5 N -0.190 5.190 6 C -0.034 4.034 7 C -0.179 4.179 8 C 0.344 3.656 9 O -0.401 6.401 10 N -0.331 5.331 11 C -0.087 4.087 12 C -0.004 4.004 13 C 0.025 3.975 14 H 0.069 0.931 15 C -0.183 4.183 16 C -0.028 4.028 17 N -0.344 5.344 18 C -0.354 4.354 19 H 0.117 0.883 20 C -0.182 4.182 21 N -0.567 5.567 22 Si 0.714 3.286 23 H -0.214 1.214 24 H -0.228 1.228 25 H -0.195 1.195 26 C -0.024 4.024 27 H 0.244 0.756 28 H 0.182 0.818 29 H 0.199 0.801 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.376 17.838 -12.655 25.637 hybrid contribution -0.896 -1.698 -0.028 1.920 sum -14.271 16.140 -12.684 25.001 Atomic orbital electron populations 1.24942 0.95732 0.98315 0.98463 1.19583 0.91470 1.02204 1.02088 1.16825 0.88174 0.98625 1.01310 1.23139 0.89821 0.94975 0.93715 1.67810 1.07504 1.23607 1.20106 1.23962 1.01746 0.88421 0.89269 1.20971 0.94676 1.00100 1.02197 1.18015 0.81251 0.81334 0.84993 1.90836 1.70077 1.56303 1.22836 1.47691 1.18417 1.39270 1.27698 1.22521 0.99653 0.99242 0.87284 1.21777 0.95322 0.85762 0.97532 1.22480 0.94078 0.89097 0.91832 0.93051 1.23626 1.00168 0.98283 0.96261 1.22806 0.98920 0.94627 0.86416 1.46614 1.48968 1.27695 1.11091 1.18761 1.22546 0.98587 0.95469 0.88279 1.24819 0.98828 0.97146 0.97381 1.69737 1.28513 1.23215 1.35220 0.86840 0.79134 0.82457 0.80160 1.21403 1.22764 1.19519 1.21780 0.92309 0.95493 0.92866 0.75577 0.81839 0.80136 0.91628 0.89959 0.90076 0.89227 0.89695 0.92557 0.90141 0.93792 0.92503 0.92776 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 19.25 29.55 0.57 -0.55 16 2 C -0.15 -1.42 13.27 -38.84 -0.52 -1.93 16 3 C -0.05 -0.47 5.73 -106.91 -0.61 -1.08 16 4 C 0.14 1.26 10.91 -17.06 -0.19 1.08 16 5 N -0.48 -4.78 10.33 -12.59 -0.13 -4.91 16 6 C 0.12 1.19 8.64 -17.09 -0.15 1.04 16 7 C -0.17 -2.04 5.50 -104.87 -0.58 -2.62 16 8 C 0.56 8.18 7.45 -12.32 -0.09 8.09 16 9 O -0.52 -9.88 16.40 5.32 0.09 -9.79 16 10 N -0.60 -7.98 2.81 -182.69 -0.51 -8.49 16 11 C 0.06 0.49 8.60 59.84 0.51 1.01 16 12 C 0.12 2.01 5.32 -4.04 -0.02 1.99 16 13 C 0.13 2.56 4.54 -66.86 -0.30 2.26 16 14 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.15 -2.37 7.11 -25.79 -0.18 -2.56 16 16 C 0.10 2.03 5.76 -2.85 -0.02 2.02 16 17 N -0.62 -14.75 3.39 -169.71 -0.58 -15.32 16 18 C -0.23 -6.45 10.94 -15.06 -0.16 -6.61 16 19 H 0.10 2.97 8.06 -52.48 -0.42 2.54 16 20 C 0.02 0.46 5.50 -17.43 -0.10 0.36 16 21 N -0.92 -28.83 13.97 55.49 0.78 -28.05 16 22 Si 0.88 22.77 25.11 -169.99 -4.27 18.50 16 23 H -0.29 -7.16 6.89 56.52 0.39 -6.78 16 24 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 25 H -0.27 -6.75 5.77 56.52 0.33 -6.42 16 26 C 0.00 0.02 9.46 -38.47 -0.36 -0.35 16 27 H 0.23 0.70 7.80 -54.09 -0.42 0.27 16 28 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.18 1.36 4.67 -52.49 -0.25 1.11 16 30 H 0.07 0.45 7.39 -51.93 -0.38 0.07 16 31 H 0.08 0.71 6.38 -51.93 -0.33 0.37 16 32 H 0.08 0.62 4.78 -51.93 -0.25 0.37 16 33 H 0.09 1.47 8.04 -51.93 -0.42 1.06 16 34 H 0.08 1.65 7.48 -51.93 -0.39 1.26 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.17 6.97 -51.93 -0.36 0.81 16 37 H 0.04 0.94 6.67 -51.93 -0.35 0.59 16 38 H 0.06 1.21 6.72 -51.93 -0.35 0.87 16 39 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 40 H 0.15 1.71 8.00 -52.49 -0.42 1.30 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -35.20 335.36 -6.59 -41.80 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.83 Total: -0.93 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.20 Total: 2.15 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.44 Total: -56.78 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.27 Total: 18.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.20 -6.59 -41.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085809411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.280 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds